Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

58226716 .. 58230632

Gene Structure 3917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTACGGATCCGATTTGGCTTCGGAGGATTTGGAGCGAACCGCTTTCCGAAAAGCCGAGAAGAAGTACAAGCTCTATTACCAAGACACTTACAGAACCCCCAAGAAGAAAAAGCAACCGAAGCCGGTGGATTTATCTGAGGTTTTGGATTTCAAGTCCATTCTGGAATCACATGATCAAAACGCTGAGCTTCCATCTGGAATAGCTCCGGTTCGGTGCGGTTTGGACCGTCCGGTTTTCTCCATAGAGAATCGCCCAGGATTTTATTTCATTCCAGGAGCACTGACTATAGAACAACAATGTCAATGGATAAAGGAGAGTTTAACCAGCTTCCCACAGCCTCCTAACAGAACAAATCACAATGCTTTTTATGGGCCTATAAATGATTTATTTATTGCAGCAAAGGAGAGGAAAATTTTAGTTGCAAAAGAGAATTCAAATTCTGAATGTAATCCTTCTGTCAGCAATAGAGATGCTCAAGGGTGGAAGTTCTTTGAGGAACGTGAAACATCATCAAAAGGAAACTCATGCAAATCAATTTCAGCTTCAGTTCTGTTGCGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGAGTGGTCCAAGCGAAACTATGATGTTTCCCTTCCACATAAAAAGATCCCTGATACACTCTGTCAACTGGCTAAAAAACTGGCAGCACCTGCAATGCCCTCGAGTGAAGATTTCCAGCCTGAAGCTGCAATAGTGAACTACTTTGGCTTAGGTATTACTGGGGGATGGCTTATGTTAGCAGATTGTGACCACTTACTAGTGTTCTTCCTTTTTGATTGGGAAACTTATACAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

276

Amino Acids

31.45

Weight (kDa)

8.11

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	182 - 247	9.2e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	691
AciI	CCGC	3 cut(s)	42, 219, 559
AclWI	GGATC	3 cut(s)	3, 16, 634
AcsI	RAATTY	3 cut(s)	414, 433, 439
AcuI	CTGAAG	2 cut(s)	531, 735
AfaI	GTAC	2 cut(s)	5, 68
AgsI	TTSAA	2 cut(s)	154, 438
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	2 cut(s)	256, 274
AluBI	AGCT	6 cut(s)	73, 190, 206, 330, 545, 719
AluI	AGCT	6 cut(s)	73, 190, 206, 330, 545, 719
Alw21I	GWGCWC	2 cut(s)	283, 578
AlwI	GGATC	3 cut(s)	3, 16, 634
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	374, 583
ApeKI	GCWGC	3 cut(s)	398, 677, 719
ApoI	RAATTY	3 cut(s)	414, 433, 439
AspS9I	GGNCC	3 cut(s)	226, 374, 600
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	226, 600
BamHI	GGATCC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	283, 578
BbvI	GCAGC	3 cut(s)	410, 689, 706
BccI	CCATC	2 cut(s)	202, 753
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	2 cut(s)	258, 276
BclI	TGATCA	1 cut(s)	175
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	399, 678, 720
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	400, 679, 721
Bme1390I	CCNGG	2 cut(s)	258, 276
Bme18I	GGWCC	2 cut(s)	226, 600
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	3 cut(s)	226, 374, 600
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	258, 276
BmrI	ACTGGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	742
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	256, 580
BsaWI	WCCGGW	2 cut(s)	208, 232
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	666, 678, 757
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	258, 276
BseDI	CCNNGG	2 cut(s)	256, 580
BseGI	GGATG	1 cut(s)	764
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	129, 177
BseNI	ACTGG	3 cut(s)	666, 678, 757
BseXI	GCAGC	3 cut(s)	410, 689, 706
BshFI	GGCC	2 cut(s)	376, 585
BsiHKAI	GWGCWC	2 cut(s)	283, 578
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	125, 209, 233
BsnI	GGCC	2 cut(s)	376, 585
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	283, 578
Bsp143I	GATC	3 cut(s)	8, 175, 639
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	42, 219, 559
BspANI	GGCC	2 cut(s)	376, 585
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	3 cut(s)	3, 16, 634
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	666, 678, 757
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	256, 580
BssMI	GATC	3 cut(s)	8, 175, 639
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	258, 276
Bst4CI	ACNGT	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	3 cut(s)	138, 186, 742
BstF5I	GGATG	1 cut(s)	764
BstKTI	GATC	3 cut(s)	11, 178, 642
BstMBI	GATC	3 cut(s)	8, 175, 639
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
BstNI	CCWGG	2 cut(s)	258, 276
BstSCI	CCNGG	2 cut(s)	256, 274
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	410, 689, 706
BstX2I	RGATCY	2 cut(s)	8, 639
BstYI	RGATCY	2 cut(s)	8, 639
BsuRI	GGCC	2 cut(s)	376, 585
BtsCI	GGATG	1 cut(s)	764
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	226, 374, 600
Csp6I	GTAC	2 cut(s)	4, 67
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	2 cut(s)	173, 528
CviQI	GTAC	2 cut(s)	4, 67
DdeI	CTNAG	3 cut(s)	138, 186, 742
DpnI	GATC	3 cut(s)	10, 177, 641
DpnII	GATC	3 cut(s)	8, 175, 639
Eco130I	CCWWGG	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	226, 600
Eco57I	CTGAAG	2 cut(s)	531, 735
Eco88I	CYCGRG	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	256, 274
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	2 cut(s)	176, 531
FatI	CATG	2 cut(s)	172, 527
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	399, 678, 720
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	3 cut(s)	399, 678, 720
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	3 cut(s)	399, 678, 720
HaeIII	GGCC	2 cut(s)	376, 585
HapII	CCGG	3 cut(s)	125, 209, 233
Hin1II	CATG	2 cut(s)	176, 531
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HinfI	GANTC	2 cut(s)	167, 250
HpaII	CCGG	3 cut(s)	125, 209, 233
Hpy166II	GTNNAC	2 cut(s)	659, 730
Hpy188I	TCNGA	5 cut(s)	13, 25, 50, 139, 445
Hpy188III	TCNNGA	2 cut(s)	164, 198
Hpy8I	GTNNAC	2 cut(s)	659, 730
HpyAV	CCTTC	2 cut(s)	465, 635
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	6 cut(s)	398, 425, 531, 589, 686, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
HpyF3I	CTNAG	3 cut(s)	138, 186, 742
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	176, 531
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	8, 175, 639
LmnI	GCTCC	4 cut(s)	34, 211, 278, 573
Lsp1109I	GCAGC	3 cut(s)	410, 689, 706
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	779
MalI	GATC	3 cut(s)	10, 177, 641
MboI	GATC	3 cut(s)	8, 175, 639
MboII	GAAGA	4 cut(s)	73, 118, 713, 790
MflI	RGATCY	2 cut(s)	8, 639
MhlI	GDGCHC	2 cut(s)	283, 578
MluCI	AATT	5 cut(s)	414, 433, 439, 537, 590
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	6 cut(s)	19, 133, 351, 402, 490, 703
MseI	TTAA	1 cut(s)	323
MspI	CCGG	3 cut(s)	125, 209, 233
MspR9I	CCNGG	2 cut(s)	258, 276
MvaI	CCWGG	2 cut(s)	258, 276
MwoI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
NdeII	GATC	3 cut(s)	8, 175, 639
NlaIII	CATG	2 cut(s)	176, 531
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	167, 250
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	400, 679, 721
Psp6I	CCWGG	2 cut(s)	256, 274
PspGI	CCWGG	2 cut(s)	256, 274
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	226, 374, 600
PspXI	VCTCGAGB	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	8, 639
RsaI	GTAC	2 cut(s)	5, 68
RsaNI	GTAC	2 cut(s)	4, 67
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	399, 678, 720
Sau3AI	GATC	3 cut(s)	8, 175, 639
Sau96I	GGNCC	3 cut(s)	226, 374, 600
ScrFI	CCNGG	2 cut(s)	258, 276
SduI	GDGCHC	2 cut(s)	283, 578
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	694
SinI	GGWCC	2 cut(s)	226, 600
SlaI	CTCGAG	1 cut(s)	694
SmlI	CTYRAG	2 cut(s)	477, 694
SmoI	CTYRAG	2 cut(s)	477, 694
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	5 cut(s)	414, 433, 439, 537, 590
SsiI	CCGC	3 cut(s)	42, 219, 559
SspMI	CTAG	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	256, 274
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	695
TasI	AATT	5 cut(s)	414, 433, 439, 537, 590
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	167, 250
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	3 cut(s)	398, 677, 719
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	226, 600
XapI	RAATTY	3 cut(s)	414, 433, 439
XhoI	CTCGAG	1 cut(s)	694
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.