Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

23901028 .. 23905306

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G225500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTACGGATCCGAATCCGGTACAGTCCCGGAGGATTTGGAACGAACCGCTTTCAGAAGAGCGGAGAAGAAGTACAAGCTGTATTACGAAGACACCTACAAATCATCCAAAAAGAAACGGAAACCGAAACCCGTGGATTTATCAGAGGTATTGGATTTCAATTCCATTCTAGAATCGTACTATCAAAACGTTGAGCTTCCACACGGTGTCGTTCCTCTTCGATGTGATTTCGATAGGCCCGTGTTCTCCTTAGAAAATCGCCCAGGGTTTTATTTCATTCCTGGAGCACTGAGGGTGAAGGAACAATGCCAGTGGATAAAGGAGAGTTTAACCAGCTTCCCGCAGCCTCCTAACAGAACAAATCACAATGCATTTTACGGGCCTATAAATGACTTGTTTATTGCGGCGAATGAGAGGAAAGTTTTGGTTGCGGATGGGGGTTCAAATTCTGAATGTGATCCTTCTGTTAGCAATGGAGGTGTTCACGGTTGGAAGTTCTTTGAGGAACGTGAAGTGTCTTCGAAAGGGAGCACGTGCAAATCAGTTTCAGCTTCAGTTCTATTGCGGAAATTGCGTTGGAGCACCCTTGGCCTGCAATTTGACTGGTCCAAGCGAAACTATGATGTCTCTCTCCCGCATAAGAAGATCCCTGATACACTCTGCCAACTGGCTAAAAGACTGGCAACACCTGCAATGCCTCTGGGTGAAGAATTCCAGCCTGAAGGTGCAATAGTGAACTACTTTGGCCCAGGTGATATGCTTGGGGGCCACCTTGATGACATGGAAGCTGATTGGAGTAAGCCTATTGTAAGCATGAGTTTAGGCTGCAAAGCAATATTCCTTTTGGGAGGAAAGCATAGGGAGGATCCTCCAATAGCAATGTTCCTTCGAAGCGGTGATGTTGTACTTATGGCTGGTGAAGCAAGGGAATGCTTTCATGGTGTGCCTCGGATATTCACAGATGGAGAAAATGATGAAATCGTGACTCTTGAGAGGCAGTTCTCACACGAGGATGATTTTAGTGCTTTAGAATACATCCGAAGTTCAAGAATCAACATCAACATCAGACAAGTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

360

Amino Acids

40.71

Weight (kDa)

6.12

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	8 cut(s)	48, 62, 341, 404, 431, 565, 635, 894
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	6 cut(s)	3, 16, 452, 640, 860, 873
AcsI	RAATTY	2 cut(s)	445, 710
AcuI	CTGAAG	2 cut(s)	537, 741
AcvI	CACGTG	1 cut(s)	534
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	5 cut(s)	5, 22, 74, 179, 906
AgsI	TTSAA	3 cut(s)	160, 444, 1047
AjnI	CCWGG	3 cut(s)	262, 280, 748
AluBI	AGCT	5 cut(s)	79, 196, 336, 551, 788
AluI	AGCT	5 cut(s)	79, 196, 336, 551, 788
Alw21I	GWGCWC	3 cut(s)	289, 533, 584
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	6 cut(s)	3, 16, 452, 640, 860, 873
AoxI	GGCC	5 cut(s)	236, 380, 589, 745, 766
ApeKI	GCWGC	2 cut(s)	343, 825
ApoI	RAATTY	2 cut(s)	445, 710
Asp700I	GAANNNNTTC	1 cut(s)	933
AspS9I	GGNCC	5 cut(s)	237, 380, 606, 746, 766
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	5 cut(s)	307, 716, 764, 908, 929
AsuII	TTCGAA	2 cut(s)	521, 889
AvaII	GGWCC	1 cut(s)	606
BamHI	GGATCC	2 cut(s)	8, 865
BauI	CACGAG	1 cut(s)	1007
BbrPI	CACGTG	1 cut(s)	534
BbsI	GAAGAC	2 cut(s)	96, 510
Bbv12I	GWGCWC	3 cut(s)	289, 533, 584
BbvI	GCAGC	2 cut(s)	355, 812
BccI	CCATC	2 cut(s)	428, 956
BciT130I	CCWGG	3 cut(s)	264, 282, 750
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	631
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	3 cut(s)	344, 405, 826
BlsI	GCNGC	3 cut(s)	345, 406, 827
Bme1390I	CCNGG	4 cut(s)	29, 264, 282, 750
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	5 cut(s)	237, 380, 606, 746, 766
BmiI	GGNNCC	3 cut(s)	10, 767, 867
BmrFI	CCNGG	4 cut(s)	29, 264, 282, 750
BpiI	GAAGAC	2 cut(s)	96, 510
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	2 cut(s)	521, 889
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	6 cut(s)	132, 262, 263, 586, 748, 947
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse1I	ACTGG	4 cut(s)	310, 608, 672, 684
Bse3DI	GCAATG	3 cut(s)	478, 699, 885
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	3 cut(s)	264, 282, 750
BseDI	CCNNGG	6 cut(s)	132, 262, 263, 586, 748, 947
BseGI	GGATG	4 cut(s)	104, 439, 1018, 1035
BseJI	GATNNNNATC	1 cut(s)	13
BseMI	GCAATG	3 cut(s)	478, 699, 885
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	4 cut(s)	310, 608, 672, 684
BseXI	GCAGC	2 cut(s)	355, 812
BshFI	GGCC	5 cut(s)	238, 382, 591, 747, 768
BsiHKAI	GWGCWC	3 cut(s)	289, 533, 584
BsiSI	CCGG	2 cut(s)	18, 29
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	5 cut(s)	238, 382, 591, 747, 768
Bsp119I	TTCGAA	2 cut(s)	521, 889
Bsp1286I	GDGCHC	3 cut(s)	289, 533, 584
Bsp143I	GATC	4 cut(s)	8, 457, 645, 865
BspACI	CCGC	8 cut(s)	48, 62, 341, 404, 431, 565, 635, 894
BspANI	GGCC	5 cut(s)	238, 382, 591, 747, 768
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	10, 767, 867
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	6 cut(s)	3, 16, 452, 640, 860, 873
BspQI	GCTCTTC	1 cut(s)	52
BspT104I	TTCGAA	2 cut(s)	521, 889
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	478, 699, 885
BsrI	ACTGG	4 cut(s)	310, 608, 672, 684
BssECI	CCNNGG	6 cut(s)	132, 262, 263, 586, 748, 947
BssMI	GATC	4 cut(s)	8, 457, 645, 865
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	3 cut(s)	264, 282, 750
Bst4CI	ACNGT	3 cut(s)	25, 206, 488
Bst6I	CTCTTC	2 cut(s)	52, 222
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	534
BstBI	TTCGAA	2 cut(s)	521, 889
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	250, 290
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	104, 439, 1018, 1035
BstKTI	GATC	4 cut(s)	11, 460, 648, 868
BstMAI	GTCTC	1 cut(s)	631
BstMBI	GATC	4 cut(s)	8, 457, 645, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	571, 588, 689, 920
BstNI	CCWGG	3 cut(s)	264, 282, 750
BstSCI	CCNGG	4 cut(s)	27, 262, 280, 748
BstV1I	GCAGC	2 cut(s)	355, 812
BstV2I	GAAGAC	2 cut(s)	96, 510
BstX2I	RGATCY	3 cut(s)	8, 645, 865
BstYI	RGATCY	3 cut(s)	8, 645, 865
BsuRI	GGCC	5 cut(s)	238, 382, 591, 747, 768
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	104, 439, 1018, 1035
BtsIMutI	CAGTG	2 cut(s)	287, 317
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	1 cut(s)	593
Cfr13I	GGNCC	5 cut(s)	237, 380, 606, 746, 766
Csp6I	GTAC	5 cut(s)	4, 21, 73, 178, 905
CspCI	CAANNNNNGTGG	2 cut(s)	293, 328
CviAII	CATG	3 cut(s)	781, 814, 938
CviQI	GTAC	5 cut(s)	4, 21, 73, 178, 905
DdeI	CTNAG	2 cut(s)	250, 290
DpnI	GATC	4 cut(s)	10, 459, 647, 867
DpnII	GATC	4 cut(s)	8, 457, 645, 865
DraIII	CACNNNGTG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	52, 222
EarI	CTCTTC	2 cut(s)	52, 222
Eco130I	CCWWGG	1 cut(s)	586
Eco47I	GGWCC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	537, 741
Eco72I	CACGTG	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	3 cut(s)	262, 280, 748
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	3 cut(s)	784, 817, 941
FaiI	YATR	9 cut(s)	386, 621, 639, 758, 782, 815, 858, 911, 939
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	3 cut(s)	780, 813, 937
FauI	CCCGC	2 cut(s)	348, 642
Fnu4HI	GCNGC	3 cut(s)	344, 405, 826
FokI	GGATG	4 cut(s)	91, 446, 1022, 1025
Fsp4HI	GCNGC	3 cut(s)	344, 405, 826
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	344, 405, 826
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	238, 382, 591, 747, 768
HapII	CCGG	2 cut(s)	18, 29
Hin1II	CATG	3 cut(s)	784, 817, 941
HinfI	GANTC	4 cut(s)	14, 173, 985, 1050
HpaII	CCGG	2 cut(s)	18, 29
HphI	GGTGA	5 cut(s)	307, 716, 764, 908, 929
Hpy166II	GTNNAC	2 cut(s)	484, 736
Hpy188I	TCNGA	7 cut(s)	13, 56, 145, 451, 951, 1040, 1067
Hpy188III	TCNNGA	4 cut(s)	170, 982, 989, 1047
Hpy8I	GTNNAC	2 cut(s)	484, 736
HpyAV	CCTTC	4 cut(s)	292, 471, 716, 896
HpyCH4III	ACNGT	3 cut(s)	25, 206, 488
HpyCH4IV	ACGT	3 cut(s)	189, 508, 533
HpyCH4V	TGCA	6 cut(s)	371, 537, 595, 692, 728, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	571, 588, 689, 920
HpyF3I	CTNAG	2 cut(s)	250, 290
HpySE526I	ACGT	3 cut(s)	189, 508, 533
Hsp92II	CATG	3 cut(s)	784, 817, 941
Kzo9I	GATC	4 cut(s)	8, 457, 645, 865
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	3 cut(s)	284, 528, 579
Lsp1109I	GCAGC	2 cut(s)	355, 812
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	3 cut(s)	189, 508, 533
MaeIII	GTNAC	1 cut(s)	982
MalI	GATC	4 cut(s)	10, 459, 647, 867
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	8, 457, 645, 865
MboII	GAAGA	7 cut(s)	69, 79, 101, 209, 510, 655, 719
MflI	RGATCY	3 cut(s)	8, 645, 865
MhlI	GDGCHC	3 cut(s)	289, 533, 584
MluCI	AATT	5 cut(s)	160, 445, 569, 596, 710
MlyI	GAGTC	1 cut(s)	979
MmeI	TCCRAC	2 cut(s)	470, 557
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	774, 1011
MspI	CCGG	2 cut(s)	18, 29
MspR9I	CCNGG	4 cut(s)	29, 264, 282, 750
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	3 cut(s)	264, 282, 750
MwoI	GCNNNNNNNGC	4 cut(s)	571, 588, 689, 920
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	4 cut(s)	8, 457, 645, 865
NlaIII	CATG	3 cut(s)	784, 817, 941
NlaIV	GGNNCC	3 cut(s)	10, 767, 867
NmuCI	GTSAC	1 cut(s)	982
NsiI	ATGCAT	1 cut(s)	373
NspV	TTCGAA	2 cut(s)	521, 889
PaqCI	CACCTGC	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	3 cut(s)	14, 173, 1050
PfoI	TCCNGGA	2 cut(s)	27, 280
PkrI	GCNGC	3 cut(s)	345, 406, 827
PleI	GAGTC	1 cut(s)	979
PmaCI	CACGTG	1 cut(s)	534
PmlI	CACGTG	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	979
Ppu21I	YACGTR	1 cut(s)	534
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	262, 280, 748
PspCI	CACGTG	1 cut(s)	534
PspGI	CCWGG	3 cut(s)	262, 280, 748
PspN4I	GGNNCC	3 cut(s)	10, 767, 867
PspPI	GGNCC	5 cut(s)	237, 380, 606, 746, 766
PsuI	RGATCY	3 cut(s)	8, 645, 865
RsaI	GTAC	5 cut(s)	5, 22, 74, 179, 906
RsaNI	GTAC	5 cut(s)	4, 21, 73, 178, 905
RseI	CAYNNNNRTG	2 cut(s)	774, 1011
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	344, 405, 826
Sau3AI	GATC	4 cut(s)	8, 457, 645, 865
Sau96I	GGNCC	5 cut(s)	237, 380, 606, 746, 766
SchI	GAGTC	1 cut(s)	979
ScrFI	CCNGG	4 cut(s)	29, 264, 282, 750
SduI	GDGCHC	3 cut(s)	289, 533, 584
SfuI	TTCGAA	2 cut(s)	521, 889
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	2 cut(s)	774, 1011
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	5 cut(s)	160, 445, 569, 596, 710
SsiI	CCGC	8 cut(s)	48, 62, 341, 404, 431, 565, 635, 894
SspI	AATATT	1 cut(s)	837
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	27, 262, 280, 748
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	25, 206, 488
TaiI	ACGT	3 cut(s)	192, 511, 536
TaqI	TCGA	4 cut(s)	220, 231, 521, 889
TasI	AATT	5 cut(s)	160, 445, 569, 596, 710
TatI	WGTACW	2 cut(s)	72, 904
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	3 cut(s)	14, 173, 1050
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	294, 317
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	2 cut(s)	343, 825
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	3 cut(s)	265, 926, 990
TspGWI	ACGGA	2 cut(s)	21, 133
TspRI	CASTG	2 cut(s)	294, 317
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	2 cut(s)	445, 710
XbaI	TCTAGA	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.