Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

13554 .. 13914

Gene Structure 361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgtacggatccgatttggcttcggaggatttggagcgaaccgctttccgaaaagccgagaagaagtacaagctctattaccaagacacttacagaacccccaagaagaaaaagcaaccgaagccggtggatttatctgaggttttggatttcaagtccattctggaatcacatgatcaaaacgctgagcttccatctggaatagctccggttcggtgcggtttggaccgtccggttttctccatagagaatcgcccaggcatcaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

8.69

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 219
AclWI	GGATC	2 cut(s)	3, 16
AfaI	GTAC	2 cut(s)	5, 68
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	3 cut(s)	73, 190, 206
AluI	AGCT	3 cut(s)	73, 190, 206
AlwI	GGATC	2 cut(s)	3, 16
AspS9I	GGNCC	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	8
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	2 cut(s)	208, 232
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	256
BseMII	CTCAG	2 cut(s)	129, 177
BsiSI	CCGG	3 cut(s)	125, 209, 233
Bsp143I	GATC	2 cut(s)	8, 175
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	42, 219
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	2 cut(s)	3, 16
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	8, 175
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	138, 186
BstKTI	GATC	2 cut(s)	11, 178
BstMBI	GATC	2 cut(s)	8, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	4, 67
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	6 cut(s)	20, 56, 73, 124, 190, 206
CviKI_1	RGCY	6 cut(s)	20, 56, 73, 124, 190, 206
CviQI	GTAC	2 cut(s)	4, 67
DdeI	CTNAG	2 cut(s)	138, 186
DpnI	GATC	2 cut(s)	10, 177
DpnII	GATC	2 cut(s)	8, 175
Eco47I	GGWCC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	176
FaiI	YATR	2 cut(s)	174, 245
FatI	CATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	175
HapII	CCGG	3 cut(s)	125, 209, 233
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	2 cut(s)	167, 250
HpaII	CCGG	3 cut(s)	125, 209, 233
Hpy188I	TCNGA	4 cut(s)	13, 25, 50, 139
Hpy188III	TCNNGA	2 cut(s)	164, 198
HpyCH4III	ACNGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	138, 186
Hsp92II	CATG	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	8, 175
LmnI	GCTCC	2 cut(s)	34, 211
LpnPI	CCDG	6 cut(s)	138, 149, 183, 222, 243, 246
MalI	GATC	2 cut(s)	10, 177
MboI	GATC	2 cut(s)	8, 175
MboII	GAAGA	2 cut(s)	73, 118
MflI	RGATCY	1 cut(s)	8
MnlI	CCTC	2 cut(s)	19, 133
MspI	CCGG	3 cut(s)	125, 209, 233
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	2 cut(s)	8, 175
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	167, 250
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	2 cut(s)	5, 68
RsaNI	GTAC	2 cut(s)	4, 67
Sau3AI	GATC	2 cut(s)	8, 175
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	4 cut(s)	75, 144, 192, 208
SinI	GGWCC	1 cut(s)	226
SsiI	CCGC	2 cut(s)	42, 219
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	167, 250
TspGWI	ACGGA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.