Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

61126428 .. 61130248

Gene Structure 3821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG298100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTACGGATCCGATTCGGCTTCGGAGGATTTGGAGCGTACCGCTTTCCGAAAAGCCGAGAAGAAGTACAAGCTCTATTACCAATACACTTACAGAACCCCCAAGAAGAAAAAGCAACCGAAGCCGGTGGATTTATCTGAGGTTTTGGATTTCAAGTCCATTCTAGAATCACATGATCAAAACGCTGAGCTTCCATCTGGAATCGCTCCGGTTCGGTGCGGTCTGGACCGTCCGGTTTTCTCCATAGAGAATCGCCCAGGATTTTATTTCATTCCAGGAGCACTGACTATAGAACAACAATGTCAATGGATAAAGGAGAGTTTAACCAGCTTCCCACAGCCTCCTAACAGAACAAATCACAATGCTTTCTATGGGCCTATAAATGATTTATTTATTGCAGCAAAGGAGAGGAAAATTTTAGTTGCAAAAGAGAATTCAAATTCTGAATGTAATCCTTCTGTCAACAATAGAGATGCTCAAGGGTGGAAGTTCTTTGAGGAACATGAAACATCATCAAAAGGAAACTCATGCAAATCAATTTCAGCTTCAGTTCTGTTGCGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGAGTGGTCCAAGCGAAACTATGATGTTTCCCTTCCACATAAAAAGATCCCTGATACACTCTGTCAACTGGCTAAAAAACTGGCAGCCCCTGCAATGCCCTCGAGTGAAGATTTCCAGCCTGAAGCTGCAATAGTGAACTACTTTGGCTTAGGTATTACTAGGGGGGGAATGGCTTATGTTAGCAGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

261

Amino Acids

29.64

Weight (kDa)

9.14

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	167 - 247	3.7e-07	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 219, 559
AclWI	GGATC	3 cut(s)	3, 16, 634
AcsI	RAATTY	3 cut(s)	414, 433, 439
AcuI	CTGAAG	2 cut(s)	531, 735
AfaI	GTAC	3 cut(s)	5, 40, 68
AgsI	TTSAA	2 cut(s)	154, 438
AjnI	CCWGG	2 cut(s)	256, 274
AluBI	AGCT	5 cut(s)	73, 190, 330, 545, 719
AluI	AGCT	5 cut(s)	73, 190, 330, 545, 719
Alw21I	GWGCWC	2 cut(s)	283, 578
AlwI	GGATC	3 cut(s)	3, 16, 634
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	374, 583
ApeKI	GCWGC	3 cut(s)	398, 677, 719
ApoI	RAATTY	3 cut(s)	414, 433, 439
AspS9I	GGNCC	3 cut(s)	226, 374, 600
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	226, 600
BamHI	GGATCC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	283, 578
BbvI	GCAGC	3 cut(s)	410, 689, 706
BccI	CCATC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	2 cut(s)	258, 276
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	2 cut(s)	164, 753
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	399, 678, 720
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	400, 679, 721
Bme1390I	CCNGG	2 cut(s)	258, 276
Bme18I	GGWCC	2 cut(s)	226, 600
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	3 cut(s)	226, 374, 600
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	258, 276
BmsI	GCATC	1 cut(s)	463
Bpu10I	CCTNAGC	1 cut(s)	742
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	256, 580
BsaWI	WCCGGW	2 cut(s)	208, 232
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	666, 678
Bse3DI	GCAATG	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	258, 276
BseDI	CCNNGG	2 cut(s)	256, 580
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	129, 177
BseNI	ACTGG	2 cut(s)	666, 678
BseXI	GCAGC	3 cut(s)	410, 689, 706
BshFI	GGCC	2 cut(s)	376, 585
BsiHKAI	GWGCWC	2 cut(s)	283, 578
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	125, 209, 233
BsnI	GGCC	2 cut(s)	376, 585
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	283, 578
Bsp143I	GATC	3 cut(s)	8, 175, 639
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	42, 219, 559
BspANI	GGCC	2 cut(s)	376, 585
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	3 cut(s)	3, 16, 634
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	666, 678
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	256, 580
BssMI	GATC	3 cut(s)	8, 175, 639
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	2 cut(s)	258, 276
Bst4CI	ACNGT	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	3 cut(s)	138, 186, 742
BstKTI	GATC	3 cut(s)	11, 178, 642
BstMBI	GATC	3 cut(s)	8, 175, 639
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
BstNI	CCWGG	2 cut(s)	258, 276
BstSCI	CCNGG	2 cut(s)	256, 274
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	410, 689, 706
BstX2I	RGATCY	2 cut(s)	8, 639
BstYI	RGATCY	2 cut(s)	8, 639
BsuRI	GGCC	2 cut(s)	376, 585
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	226, 374, 600
Csp6I	GTAC	3 cut(s)	4, 39, 67
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	3 cut(s)	173, 503, 528
CviQI	GTAC	3 cut(s)	4, 39, 67
DdeI	CTNAG	3 cut(s)	138, 186, 742
DpnI	GATC	3 cut(s)	10, 177, 641
DpnII	GATC	3 cut(s)	8, 175, 639
Eco130I	CCWWGG	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	226, 600
Eco57I	CTGAAG	2 cut(s)	531, 735
Eco88I	CYCGRG	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	256, 274
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	3 cut(s)	176, 506, 531
FatI	CATG	3 cut(s)	172, 502, 527
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	399, 678, 720
Fsp4HI	GCNGC	3 cut(s)	399, 678, 720
FspBI	CTAG	2 cut(s)	164, 753
GluI	GCNGC	3 cut(s)	399, 678, 720
HaeIII	GGCC	2 cut(s)	376, 585
HapII	CCGG	3 cut(s)	125, 209, 233
Hin1II	CATG	3 cut(s)	176, 506, 531
HincII	GTYRAC	2 cut(s)	463, 659
HindII	GTYRAC	2 cut(s)	463, 659
HinfI	GANTC	4 cut(s)	14, 167, 201, 250
HpaII	CCGG	3 cut(s)	125, 209, 233
Hpy166II	GTNNAC	3 cut(s)	463, 659, 730
Hpy188I	TCNGA	5 cut(s)	13, 25, 50, 139, 445
Hpy188III	TCNNGA	3 cut(s)	164, 198, 224
Hpy8I	GTNNAC	3 cut(s)	463, 659, 730
HpyAV	CCTTC	2 cut(s)	465, 635
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	398, 425, 531, 589, 686, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
HpyF3I	CTNAG	3 cut(s)	138, 186, 742
Hsp92II	CATG	3 cut(s)	176, 506, 531
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	8, 175, 639
LmnI	GCTCC	4 cut(s)	34, 211, 278, 573
Lsp1109I	GCAGC	3 cut(s)	410, 689, 706
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	164, 753
MalI	GATC	3 cut(s)	10, 177, 641
MboI	GATC	3 cut(s)	8, 175, 639
MboII	GAAGA	3 cut(s)	73, 118, 713
MflI	RGATCY	2 cut(s)	8, 639
MhlI	GDGCHC	2 cut(s)	283, 578
MluCI	AATT	5 cut(s)	414, 433, 439, 537, 590
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	6 cut(s)	19, 133, 351, 402, 490, 703
MseI	TTAA	1 cut(s)	323
MspI	CCGG	3 cut(s)	125, 209, 233
MspR9I	CCNGG	2 cut(s)	258, 276
MvaI	CCWGG	2 cut(s)	258, 276
MwoI	GCNNNNNNNGC	4 cut(s)	121, 565, 582, 683
NdeII	GATC	3 cut(s)	8, 175, 639
NlaIII	CATG	3 cut(s)	176, 506, 531
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	694
PfeI	GAWTC	4 cut(s)	14, 167, 201, 250
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	400, 679, 721
Psp6I	CCWGG	2 cut(s)	256, 274
PspGI	CCWGG	2 cut(s)	256, 274
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	3 cut(s)	226, 374, 600
PspXI	VCTCGAGB	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	8, 639
RsaI	GTAC	3 cut(s)	5, 40, 68
RsaNI	GTAC	3 cut(s)	4, 39, 67
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	399, 678, 720
Sau3AI	GATC	3 cut(s)	8, 175, 639
Sau96I	GGNCC	3 cut(s)	226, 374, 600
ScrFI	CCNGG	2 cut(s)	258, 276
SduI	GDGCHC	2 cut(s)	283, 578
SetI	ASST	7 cut(s)	75, 144, 192, 332, 547, 721, 748
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	694
SinI	GGWCC	2 cut(s)	226, 600
SlaI	CTCGAG	1 cut(s)	694
SmlI	CTYRAG	2 cut(s)	477, 694
SmoI	CTYRAG	2 cut(s)	477, 694
Sse9I	AATT	5 cut(s)	414, 433, 439, 537, 590
SsiI	CCGC	3 cut(s)	42, 219, 559
SspMI	CTAG	2 cut(s)	164, 753
StyD4I	CCNGG	2 cut(s)	256, 274
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	695
TasI	AATT	5 cut(s)	414, 433, 439, 537, 590
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	4 cut(s)	14, 167, 201, 250
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	3 cut(s)	398, 677, 719
TspDTI	ATGAA	2 cut(s)	259, 519
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	226, 600
XapI	RAATTY	3 cut(s)	414, 433, 439
XbaI	TCTAGA	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	694
XspI	CTAG	2 cut(s)	164, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.