Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

53485526 .. 53489449

Gene Structure 3924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTACGGATCCGATTCGGCTTCGGAGGATTTGGAGCGAACCGCTTTCCGAAAAGCCGAGAAGAAGTACAAGCTCTATTACCAAGACACTTACAGAACCCCCAAGAAGAAAAAGCAACCGAAGCCGGTGGATTTATCTGAGGTTTTGGATTTCAAGTCCATTCTAGAATCACATGATCAAAACGCTGAGCTTCCATCTGGAATCGCTCCGATTCGTTGCGCCAACCATTGTTTTTTATTTCTAACATATATTTCCTTCCCGAAACATACAGGATTTTATTTCATTCCAGGAGCACTGACTATAGAACAACAATGTCAATGGATAAAGGAGAGTTTAACCAGCTTCCCACAGCCTCCTAACAGAACAAATCACAATGCTTTTTATGGGCCTATAAATGATTTATTTATTGCAGCAAAGGAGAGGAAAATTTTAGTTGCAAAAGAGAATTCAAATTCTGAATGTAATCCTTCTGTCAGCAATAGAGATGCTCAAGGGTGGAAGTTCTTTCAGGAACATGAAGCATCTTCAAAAGGAAACTCATGCAAATCAATTTCAGCTTCAGTTCTATTGCGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGACTGGTCCAAGCGAAACTATGATGTTTCCCTTCCACATAAAAAGATCCCTGATACACTCTGTCAACTGGCTAAAAAACTGGCAGCACCTGCAATGCCCTTGAGTGAAGATTTCCAGCCTGAAGCTGCAATAGTGAACTACTTTGGCTTAGGTGATATGCTTGGGGGTCACCTGGATGACATGGAAGCTGATTGGAGTAAGCCTATTGTAAGCATGAGTTTAGGCTGCAAAGCAATATTCCTTCTGGGAGGAAAGCTTAGAGAGGATCCTCCATTAGCAATGTTCCTTCGAAGTGGTGATGTTGTACTTATGGCTGGAGAAGCAAGAGAATGCTTTCATGGCGTGCCTCGGATATTCACAGATAGAGAAAATGCTGAAATTGCGCCTCTTGAGCAGCAGTTCTCACACGAGGATGATTCAAGTTTTTTAGAATACATCCAAACTTCAAGAATCAACATCAACATTAGACAAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

361

Amino Acids

40.96

Weight (kDa)

6.76

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	177 - 358	5.7e-38	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
AciI	CCGC	2 cut(s)	42, 571
AclWI	GGATC	5 cut(s)	3, 16, 646, 866, 879
AcsI	RAATTY	3 cut(s)	426, 445, 451
AcuI	CTGAAG	2 cut(s)	543, 747
AfaI	GTAC	3 cut(s)	5, 68, 912
AgsI	TTSAA	5 cut(s)	154, 450, 528, 1026, 1053
AjnI	CCWGG	2 cut(s)	286, 777
AluBI	AGCT	7 cut(s)	73, 190, 342, 557, 731, 794, 862
AluI	AGCT	7 cut(s)	73, 190, 342, 557, 731, 794, 862
Alw21I	GWGCWC	2 cut(s)	295, 590
AlwI	GGATC	5 cut(s)	3, 16, 646, 866, 879
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	386, 595
ApeKI	GCWGC	5 cut(s)	410, 689, 731, 831, 1000
ApoI	RAATTY	3 cut(s)	426, 445, 451
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	221, 991
AspS9I	GGNCC	2 cut(s)	386, 612
AsuHPI	GGTGA	3 cut(s)	767, 770, 914
AsuII	TTCGAA	1 cut(s)	895
AvaII	GGWCC	1 cut(s)	612
BamHI	GGATCC	2 cut(s)	8, 871
BauI	CACGAG	1 cut(s)	1013
Bbv12I	GWGCWC	2 cut(s)	295, 590
BbvI	GCAGC	5 cut(s)	422, 701, 718, 818, 1012
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	288, 779
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	5 cut(s)	411, 690, 732, 832, 1001
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	5 cut(s)	412, 691, 733, 833, 1002
Bme1390I	CCNGG	2 cut(s)	288, 779
Bme18I	GGWCC	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	386, 612
BmiI	GGNNCC	2 cut(s)	10, 873
BmrFI	CCNGG	2 cut(s)	288, 779
BmsI	GCATC	2 cut(s)	475, 530
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	754
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	3 cut(s)	474, 727, 1016
BsaJI	CCNNGG	2 cut(s)	592, 953
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	614, 678, 690
Bse3DI	GCAATG	2 cut(s)	705, 891
BseBI	CCWGG	2 cut(s)	288, 779
BseDI	CCNNGG	2 cut(s)	592, 953
BseGI	GGATG	3 cut(s)	787, 1024, 1041
BseMI	GCAATG	2 cut(s)	705, 891
BseMII	CTCAG	2 cut(s)	129, 177
BseNI	ACTGG	3 cut(s)	614, 678, 690
BseXI	GCAGC	5 cut(s)	422, 701, 718, 818, 1012
BshFI	GGCC	2 cut(s)	388, 597
BsiHKAI	GWGCWC	2 cut(s)	295, 590
BsiSI	CCGG	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	2 cut(s)	388, 597
Bsp119I	TTCGAA	1 cut(s)	895
Bsp1286I	GDGCHC	2 cut(s)	295, 590
Bsp143I	GATC	4 cut(s)	8, 175, 651, 871
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	42, 571
BspANI	GGCC	2 cut(s)	388, 597
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	2 cut(s)	10, 873
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	5 cut(s)	3, 16, 646, 866, 879
BspT104I	TTCGAA	1 cut(s)	895
BsrDI	GCAATG	2 cut(s)	705, 891
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	614, 678, 690
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	592, 953
BssMI	GATC	4 cut(s)	8, 175, 651, 871
BssSI	CACGAG	1 cut(s)	1013
BssT1I	CCWWGG	1 cut(s)	592
Bst2BI	CACGAG	1 cut(s)	1013
Bst2UI	CCWGG	2 cut(s)	288, 779
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	895
BstC8I	GCNNGC	2 cut(s)	599, 950
BstDEI	CTNAG	4 cut(s)	138, 186, 754, 863
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	787, 1024, 1041
BstHHI	GCGC	2 cut(s)	221, 991
BstKTI	GATC	4 cut(s)	11, 178, 654, 874
BstMBI	GATC	4 cut(s)	8, 175, 651, 871
BstMWI	GCNNNNNNNGC	8 cut(s)	121, 577, 594, 695, 926, 945, 986, 997
BstNI	CCWGG	2 cut(s)	288, 779
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	286, 777
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	422, 701, 718, 818, 1012
BstX2I	RGATCY	3 cut(s)	8, 651, 871
BstYI	RGATCY	3 cut(s)	8, 651, 871
BsuRI	GGCC	2 cut(s)	388, 597
BtsCI	GGATG	3 cut(s)	787, 1024, 1041
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	599, 950
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	221, 991
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	386, 612
Csp6I	GTAC	3 cut(s)	4, 67, 911
CviAII	CATG	6 cut(s)	173, 515, 540, 787, 820, 944
CviQI	GTAC	3 cut(s)	4, 67, 911
DdeI	CTNAG	4 cut(s)	138, 186, 754, 863
DpnI	GATC	4 cut(s)	10, 177, 653, 873
DpnII	GATC	4 cut(s)	8, 175, 651, 871
Eco130I	CCWWGG	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	543, 747
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	286, 777
EcoT14I	CCWWGG	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	592
FaeI	CATG	6 cut(s)	176, 518, 543, 790, 823, 947
FatI	CATG	6 cut(s)	172, 514, 539, 786, 819, 943
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	411, 690, 732, 832, 1001
FokI	GGATG	3 cut(s)	794, 1028, 1031
Fsp4HI	GCNGC	5 cut(s)	411, 690, 732, 832, 1001
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	220, 990
GluI	GCNGC	5 cut(s)	411, 690, 732, 832, 1001
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	388, 597
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	2 cut(s)	221, 991
Hin1II	CATG	6 cut(s)	176, 518, 543, 790, 823, 947
Hin6I	GCGC	2 cut(s)	219, 989
HinP1I	GCGC	2 cut(s)	219, 989
HincII	GTYRAC	1 cut(s)	671
HindII	GTYRAC	1 cut(s)	671
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	6 cut(s)	14, 167, 201, 211, 1022, 1056
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	3 cut(s)	767, 770, 914
Hpy166II	GTNNAC	2 cut(s)	671, 742
Hpy188I	TCNGA	8 cut(s)	13, 25, 50, 139, 210, 457, 957, 1085
Hpy188III	TCNNGA	6 cut(s)	164, 198, 259, 509, 995, 1053
Hpy8I	GTNNAC	2 cut(s)	671, 742
HpyAV	CCTTC	5 cut(s)	265, 477, 647, 857, 902
HpyCH4V	TGCA	7 cut(s)	410, 437, 543, 601, 698, 734, 834
HpyF10VI	GCNNNNNNNGC	8 cut(s)	121, 577, 594, 695, 926, 945, 986, 997
HpyF3I	CTNAG	4 cut(s)	138, 186, 754, 863
Hsp92II	CATG	6 cut(s)	176, 518, 543, 790, 823, 947
HspAI	GCGC	2 cut(s)	219, 989
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	8, 175, 651, 871
LmnI	GCTCC	4 cut(s)	34, 211, 290, 585
Lsp1109I	GCAGC	5 cut(s)	422, 701, 718, 818, 1012
LweI	GCATC	2 cut(s)	475, 530
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	4 cut(s)	10, 177, 653, 873
MboI	GATC	4 cut(s)	8, 175, 651, 871
MboII	GAAGA	4 cut(s)	73, 118, 516, 725
MflI	RGATCY	3 cut(s)	8, 651, 871
MhlI	GDGCHC	2 cut(s)	295, 590
MluCI	AATT	6 cut(s)	426, 445, 451, 549, 602, 984
MmeI	TCCRAC	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	780, 1017
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	288, 779
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	2 cut(s)	288, 779
MwoI	GCNNNNNNNGC	8 cut(s)	121, 577, 594, 695, 926, 945, 986, 997
NdeII	GATC	4 cut(s)	8, 175, 651, 871
NlaIII	CATG	6 cut(s)	176, 518, 543, 790, 823, 947
NlaIV	GGNNCC	2 cut(s)	10, 873
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	895
PaqCI	CACCTGC	1 cut(s)	703
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	6 cut(s)	14, 167, 201, 211, 1022, 1056
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	412, 691, 733, 833, 1002
Psp6I	CCWGG	2 cut(s)	286, 777
PspEI	GGTNACC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	286, 777
PspN4I	GGNNCC	2 cut(s)	10, 873
PspPI	GGNCC	2 cut(s)	386, 612
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	3 cut(s)	8, 651, 871
RsaI	GTAC	3 cut(s)	5, 68, 912
RsaNI	GTAC	3 cut(s)	4, 67, 911
RseI	CAYNNNNRTG	2 cut(s)	780, 1017
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	5 cut(s)	411, 690, 732, 832, 1001
Sau3AI	GATC	4 cut(s)	8, 175, 651, 871
Sau96I	GGNCC	2 cut(s)	386, 612
ScrFI	CCNGG	2 cut(s)	288, 779
SduI	GDGCHC	2 cut(s)	295, 590
SfaNI	GCATC	2 cut(s)	475, 530
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	895
SinI	GGWCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	780, 1017
SmlI	CTYRAG	3 cut(s)	489, 706, 995
SmoI	CTYRAG	3 cut(s)	489, 706, 995
Sse9I	AATT	6 cut(s)	426, 445, 451, 549, 602, 984
SsiI	CCGC	2 cut(s)	42, 571
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	286, 777
StyI	CCWWGG	1 cut(s)	592
TaqI	TCGA	1 cut(s)	895
TasI	AATT	6 cut(s)	426, 445, 451, 549, 602, 984
TatI	WGTACW	2 cut(s)	66, 910
TfiI	GAWTC	6 cut(s)	14, 167, 201, 211, 1022, 1056
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	5 cut(s)	410, 689, 731, 831, 1000
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	3 cut(s)	271, 531, 932
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	612
XapI	RAATTY	3 cut(s)	426, 445, 451
XbaI	TCTAGA	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.