Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Reverse (-)

8759924 .. 8762650

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTACGGATCCGAATCCGGTACGGTCCCGGATGATTCGGAGCGAACCGCTTTCAGACGAGCGGAGAAGAAGTACAAGCTGTACTACGAAGACACTTACAAATCCTCCAAAAAGAAAAGGAAACCGAAACCGGTGGATTTATCCCAGGTCTTGGATTTCAAGTCAATTCTAGAATCCTACAATCAGAAGGCTGTGCTCCTGCCGGGAATCGTTCCGGTTCAATGCGGTTTTGACGGACCCGTCTTCTCCATAGAAAATCGCCCAGGATTTTATTTCGTTCCTGGAGCACTGAGTGTAGAAGAACAATGCCAATGGATAAGGGAGAGTTTAACCATCTTCCCGCAGCCTCCTAACAGAACAAATCACAATGCATTTTACGGGCCTATTAGTGATTTATTTTCTGCGGCAAAGGAGAGGAAAGTTCTGGTTGCAGAAGGGAGTTCAAATTCTGAATGTAGTTCTGCTGTCAGCAATGGGGATGCTGACAGGTGGAAGTTCTTTGAGGAACATGAAGTGTCGTCAAAAGGAAACTCAGGAAAATCAGTCTCGGCTTCAGTTTTATTACGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGAATGGTCCAAGCGAAACTATGACGTCTCTCTCCCACATAACAAAATCCCTGATACACTTTGTCAACTGGCTAAAAGACTTGCAAAACCTGCAATGCCTCCGGGTGAAGAGTTCCAGCCTGAAGGTGCAATAGTCAACTACTTTGGCCCAGGCGATATGCTTGGGGGCCACCTTGATGACATGGAAGCTGATTGGAGTAAGCCTATCGTAAGCATGAGTTTAGGCTGCAAAGCAATTTTCCTTTTGGGTGGAAAGCTTAGGGAGGATCCTCCAATAGCAATGTTCCTTCGAAGCGGTGATGTTGTACTTATGGCCGGGGAAGCAAGGGAATGCTTTCATGGCGTGCCTCGGATATTCACTGAGGGAGAAAATGCTGAAATTGTGCCTCTTGAGAAGCAGTTCTCCGACGAGGAGGATGTTTGTGTTTTAGAGTACATCCAAACTTCAAGAATCAACGTCAACATCAGACAAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

360

Amino Acids

40.23

Weight (kDa)

5.74

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	179 - 356	5.5e-38	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AatII	GACGTC	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	697
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	6 cut(s)	48, 62, 225, 341, 404, 894
AclWI	GGATC	4 cut(s)	3, 16, 860, 873
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	537, 741
AcyI	GRCGYC	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	6 cut(s)	5, 22, 74, 83, 906, 1034
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	160, 221, 444, 602, 1047
AjnI	CCWGG	4 cut(s)	144, 262, 280, 748
AluBI	AGCT	3 cut(s)	79, 788, 856
AluI	AGCT	3 cut(s)	79, 788, 856
Alw21I	GWGCWC	3 cut(s)	198, 289, 584
Alw26I	GTCTC	2 cut(s)	550, 631
AlwI	GGATC	4 cut(s)	3, 16, 860, 873
AoxI	GGCC	5 cut(s)	380, 589, 745, 766, 912
ApeKI	GCWGC	2 cut(s)	343, 825
ApoI	RAATTY	1 cut(s)	445
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	2 cut(s)	933, 998
AspS9I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
AsuC2I	CCSGG	4 cut(s)	29, 204, 702, 916
AsuHPI	GGTGA	2 cut(s)	716, 908
AsuII	TTCGAA	1 cut(s)	889
AvaII	GGWCC	3 cut(s)	25, 236, 606
BamHI	GGATCC	2 cut(s)	8, 865
BbsI	GAAGAC	2 cut(s)	96, 235
Bbv12I	GWGCWC	3 cut(s)	198, 289, 584
BbvI	GCAGC	2 cut(s)	355, 812
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	4 cut(s)	146, 264, 282, 750
BcnI	CCSGG	4 cut(s)	29, 204, 702, 916
BcoDI	GTCTC	2 cut(s)	550, 631
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	3 cut(s)	344, 405, 826
BlsI	GCNGC	3 cut(s)	345, 406, 827
Bme1390I	CCNGG	8 cut(s)	29, 146, 204, 264, 282, 702, 750, 916
Bme18I	GGWCC	3 cut(s)	25, 236, 606
BmgT120I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
BmiI	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
BmrFI	CCNGG	8 cut(s)	29, 146, 204, 264, 282, 702, 750, 916
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	96, 235
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	857
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	4 cut(s)	29, 204, 702, 916
BsaBI	GATNNNNATC	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	6 cut(s)	144, 262, 586, 748, 915, 947
BsaWI	WCCGGW	3 cut(s)	17, 130, 214
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	672
Bse3DI	GCAATG	3 cut(s)	478, 699, 885
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	4 cut(s)	146, 264, 282, 750
BseDI	CCNNGG	6 cut(s)	144, 262, 586, 748, 915, 947
BseGI	GGATG	4 cut(s)	37, 484, 1021, 1035
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	3 cut(s)	478, 699, 885
BseMII	CTCAG	3 cut(s)	281, 546, 951
BseNI	ACTGG	1 cut(s)	672
BseRI	GAGGAG	1 cut(s)	1025
BseXI	GCAGC	2 cut(s)	355, 812
BshFI	GGCC	5 cut(s)	382, 591, 747, 768, 914
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	3 cut(s)	198, 289, 584
BsiSI	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	550, 631
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	5 cut(s)	382, 591, 747, 768, 914
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	3 cut(s)	198, 289, 584
Bsp143I	GATC	2 cut(s)	8, 865
BspACI	CCGC	6 cut(s)	48, 62, 225, 341, 404, 894
BspANI	GGCC	5 cut(s)	382, 591, 747, 768, 914
BspCNI	CTCAG	3 cut(s)	282, 545, 952
BspLI	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	4 cut(s)	3, 16, 860, 873
BspT104I	TTCGAA	1 cut(s)	889
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	478, 699, 885
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	6 cut(s)	144, 262, 586, 748, 915, 947
BssMI	GATC	2 cut(s)	8, 865
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	4 cut(s)	146, 264, 282, 750
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	702
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	593, 944
BstDEI	CTNAG	4 cut(s)	290, 532, 857, 960
BstF5I	GGATG	4 cut(s)	37, 484, 1021, 1035
BstKTI	GATC	2 cut(s)	11, 868
BstMAI	GTCTC	2 cut(s)	550, 631
BstMBI	GATC	2 cut(s)	8, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
BstNI	CCWGG	4 cut(s)	146, 264, 282, 750
BstSCI	CCNGG	8 cut(s)	27, 144, 202, 262, 280, 700, 748, 914
BstV1I	GCAGC	2 cut(s)	355, 812
BstV2I	GAAGAC	2 cut(s)	96, 235
BstX2I	RGATCY	2 cut(s)	8, 865
BstYI	RGATCY	2 cut(s)	8, 865
BsuRI	GGCC	5 cut(s)	382, 591, 747, 768, 914
BtsCI	GGATG	4 cut(s)	37, 484, 1021, 1035
BtsIMutI	CAGTG	2 cut(s)	287, 957
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	593, 944
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
Csp6I	GTAC	6 cut(s)	4, 21, 73, 82, 905, 1033
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	4 cut(s)	509, 781, 814, 938
CviQI	GTAC	6 cut(s)	4, 21, 73, 82, 905, 1033
DdeI	CTNAG	4 cut(s)	290, 532, 857, 960
DpnI	GATC	2 cut(s)	10, 867
DpnII	GATC	2 cut(s)	8, 865
DraIII	CACNNNGTG	1 cut(s)	293
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco130I	CCWWGG	1 cut(s)	586
Eco47I	GGWCC	3 cut(s)	25, 236, 606
Eco57I	CTGAAG	2 cut(s)	537, 741
EcoRII	CCWGG	4 cut(s)	144, 262, 280, 748
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	4 cut(s)	512, 784, 817, 941
FaiI	YATR	9 cut(s)	251, 510, 621, 639, 758, 782, 815, 911, 939
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	4 cut(s)	508, 780, 813, 937
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	344, 405, 826
FokI	GGATG	4 cut(s)	44, 491, 1022, 1028
Fsp4HI	GCNGC	3 cut(s)	344, 405, 826
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	344, 405, 826
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	5 cut(s)	382, 591, 747, 768, 914
HapII	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	512, 784, 817, 941
HincII	GTYRAC	3 cut(s)	665, 736, 1060
HindII	GTYRAC	3 cut(s)	665, 736, 1060
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	5 cut(s)	14, 35, 173, 207, 1050
HpaII	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
HphI	GGTGA	2 cut(s)	716, 908
Hpy166II	GTNNAC	3 cut(s)	665, 736, 1060
Hpy188I	TCNGA	9 cut(s)	13, 40, 56, 186, 451, 951, 1006, 1067, 1079
Hpy188III	TCNNGA	4 cut(s)	170, 534, 989, 1047
Hpy8I	GTNNAC	3 cut(s)	665, 736, 1060
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	4 cut(s)	181, 428, 716, 896
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	624, 1056
HpyCH4V	TGCA	7 cut(s)	371, 431, 595, 683, 692, 728, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
HpyF3I	CTNAG	4 cut(s)	290, 532, 857, 960
HpySE526I	ACGT	2 cut(s)	624, 1056
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	4 cut(s)	512, 784, 817, 941
Kzo9I	GATC	2 cut(s)	8, 865
LmnI	GCTCC	4 cut(s)	40, 201, 284, 579
Lsp1109I	GCAGC	2 cut(s)	355, 812
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	624, 1056
MalI	GATC	2 cut(s)	10, 867
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	8, 865
MboII	GAAGA	6 cut(s)	79, 101, 235, 311, 328, 719
MflI	RGATCY	2 cut(s)	8, 865
MhlI	GDGCHC	3 cut(s)	198, 289, 584
MluCI	AATT	5 cut(s)	165, 445, 596, 834, 978
MmeI	TCCRAC	2 cut(s)	557, 1029
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	933, 998
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
MspR9I	CCNGG	8 cut(s)	29, 146, 204, 264, 282, 702, 750, 916
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	4 cut(s)	146, 264, 282, 750
MwoI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
NciI	CCSGG	4 cut(s)	29, 204, 702, 916
NdeII	GATC	2 cut(s)	8, 865
NlaIII	CATG	4 cut(s)	512, 784, 817, 941
NlaIV	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
NmeAIII	GCCGAG	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	2 cut(s)	933, 998
PfeI	GAWTC	5 cut(s)	14, 35, 173, 207, 1050
PflMI	CCANNNNNTGG	1 cut(s)	151
PfoI	TCCNGGA	2 cut(s)	27, 280
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	345, 406, 827
Psp6I	CCWGG	4 cut(s)	144, 262, 280, 748
PspGI	CCWGG	4 cut(s)	144, 262, 280, 748
PspN4I	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
PspPI	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
PsuI	RGATCY	2 cut(s)	8, 865
RsaI	GTAC	6 cut(s)	5, 22, 74, 83, 906, 1034
RsaNI	GTAC	6 cut(s)	4, 21, 73, 82, 905, 1033
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	344, 405, 826
Sau3AI	GATC	2 cut(s)	8, 865
Sau96I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
ScrFI	CCNGG	8 cut(s)	29, 146, 204, 264, 282, 702, 750, 916
SduI	GDGCHC	3 cut(s)	198, 289, 584
SfaNI	GCATC	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	3 cut(s)	25, 236, 606
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	5 cut(s)	165, 445, 596, 834, 978
SsiI	CCGC	6 cut(s)	48, 62, 225, 341, 404, 894
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	8 cut(s)	27, 144, 202, 262, 280, 700, 748, 914
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	627, 1059
TaqI	TCGA	1 cut(s)	889
TasI	AATT	5 cut(s)	165, 445, 596, 834, 978
TatI	WGTACW	4 cut(s)	72, 81, 904, 1032
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	5 cut(s)	14, 35, 173, 207, 1050
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	294, 964
TseI	GCWGC	2 cut(s)	343, 825
TspDTI	ATGAA	2 cut(s)	525, 926
TspGWI	ACGGA	3 cut(s)	21, 249, 580
TspRI	CASTG	2 cut(s)	294, 964
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	3 cut(s)	25, 236, 606
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	933, 998
XspI	CTAG	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.