Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Reverse (-)

6973240 .. 6975399

Gene Structure 2160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTACGGATCCGAATCCGGTACGGTCCCGGATGATTTGGAGCGAACCGCTTTCAGACGAGCGGAGAAGAAGTACAAGCTGTATTACGAAGACACTTACAAATCCTCCAAAAAGAAAAGGAAACCCAAACCGGTGGATTTATCTGAGGTCTTGGATTTCAAGTCAATTCTAGAATCCTGCAATCAGAAGGCTGTGCTTCCGCCGGGAATCGTTCCGGTTCAATGCGGTTTCGATGGCCCCGTCTTCTCCATAGAAAATCGCCCAGGATTTTATTTCATTCCTGGAGCACTGAGCGTAGAAGAACAATGCCAATGGATAAAGGAGAGTTTAACCAGCTTCCCGCAGCCTCCTAACAGAACTAATCACAATGCATTTTACGGGCCTATTAGTGATTTATTTTCTGCGGCGAAGGAGAGGAAAGTTTTGGTTGCACAAGGGAGTTCAAATTCTGAATGTAGTTCTGCTGTCAGCAATGGGGATGCTGACAGGTGGACGTTCTTTGAGGAACATGAAGTGTCGTCAAAGGGAAACTCAGGAAAATTGGTCTCGGCTTCAGTTTTATTACGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGAATGGTCCAAGCGAAACTATGACGTCTCTCTTCCACATAACAAAATCCCTGATACACTTTGTCAACTGGCTAAAAGACTGGCAAAACCTGCAATGCCTCCGGGTGAAGAGTTCCAGCCTGAAGGTGCAATAGTCAACTACTTTGGCCCAGGCGATATGCTTGGGGGCCACCTTGATGACATGGAAGCTGATTGGAGTAAGCCTATTGTAAGCATGAGTTTAGGCTGCAAAGCAATTTTCCTTTTGGGTGGAAAGCTTAGGGAGGATCCTCCAATAGCAATGTTCCTTCGAAGCGGTGATGTTGTACTTATGGCCGGGGAAGCAAGGGAATGCTTTCATGGCGTGCCTCGGATATTCACTGAGGGAGAAAATGCTGAAATTGTGCCTCTTGAGAAGCAGTTCTCCGACGAGGAGGATGTTTGTGTTTTAGAGTACATCCAAACTTCAAGAATCAACATCAACATCAGACAAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

360

Amino Acids

40.15

Weight (kDa)

5.6

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	627
Acc36I	ACCTGC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	7 cut(s)	48, 62, 200, 225, 341, 404, 894
AclWI	GGATC	4 cut(s)	3, 16, 860, 873
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	537, 741
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	5 cut(s)	5, 22, 74, 906, 1034
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	160, 221, 444, 602, 1047
AjnI	CCWGG	3 cut(s)	262, 280, 748
AluBI	AGCT	4 cut(s)	79, 336, 788, 856
AluI	AGCT	4 cut(s)	79, 336, 788, 856
Alw21I	GWGCWC	2 cut(s)	289, 584
Alw26I	GTCTC	2 cut(s)	550, 631
AlwI	GGATC	4 cut(s)	3, 16, 860, 873
AoxI	GGCC	6 cut(s)	235, 380, 589, 745, 766, 912
ApeKI	GCWGC	2 cut(s)	343, 825
ApoI	RAATTY	1 cut(s)	445
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	2 cut(s)	933, 998
AspS9I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
AsuC2I	CCSGG	4 cut(s)	29, 204, 702, 916
AsuHPI	GGTGA	2 cut(s)	716, 908
AsuII	TTCGAA	1 cut(s)	889
AvaII	GGWCC	2 cut(s)	25, 606
BamHI	GGATCC	2 cut(s)	8, 865
BbsI	GAAGAC	2 cut(s)	96, 235
Bbv12I	GWGCWC	2 cut(s)	289, 584
BbvI	GCAGC	2 cut(s)	355, 812
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	3 cut(s)	264, 282, 750
BcnI	CCSGG	4 cut(s)	29, 204, 702, 916
BcoDI	GTCTC	2 cut(s)	550, 631
BfaI	CTAG	1 cut(s)	170
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	3 cut(s)	344, 405, 826
BlsI	GCNGC	3 cut(s)	345, 406, 827
Bme1390I	CCNGG	7 cut(s)	29, 204, 264, 282, 702, 750, 916
Bme18I	GGWCC	2 cut(s)	25, 606
BmgT120I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
BmiI	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
BmrFI	CCNGG	7 cut(s)	29, 204, 264, 282, 702, 750, 916
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	96, 235
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	857
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	4 cut(s)	29, 204, 702, 916
BsaBI	GATNNNNATC	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	5 cut(s)	262, 586, 748, 915, 947
BsaWI	WCCGGW	3 cut(s)	17, 130, 214
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 89, 119
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	672, 684
Bse3DI	GCAATG	3 cut(s)	478, 699, 885
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	3 cut(s)	264, 282, 750
BseDI	CCNNGG	5 cut(s)	262, 586, 748, 915, 947
BseGI	GGATG	4 cut(s)	37, 484, 1021, 1035
BseJI	GATNNNNATC	1 cut(s)	13
BseMI	GCAATG	3 cut(s)	478, 699, 885
BseMII	CTCAG	4 cut(s)	135, 281, 546, 951
BseNI	ACTGG	2 cut(s)	672, 684
BseRI	GAGGAG	1 cut(s)	1025
BseXI	GCAGC	2 cut(s)	355, 812
BshFI	GGCC	6 cut(s)	237, 382, 591, 747, 768, 914
BshTI	ACCGGT	1 cut(s)	130
BsiHKAI	GWGCWC	2 cut(s)	289, 584
BsiSI	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
BslFI	GGGAC	1 cut(s)	11
BsmAI	GTCTC	2 cut(s)	550, 631
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	6 cut(s)	237, 382, 591, 747, 768, 914
Bso31I	GGTCTC	1 cut(s)	550
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	2 cut(s)	289, 584
Bsp143I	GATC	2 cut(s)	8, 865
BspACI	CCGC	7 cut(s)	48, 62, 200, 225, 341, 404, 894
BspANI	GGCC	6 cut(s)	237, 382, 591, 747, 768, 914
BspCNI	CTCAG	4 cut(s)	136, 282, 545, 952
BspLI	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	4 cut(s)	3, 16, 860, 873
BspT104I	TTCGAA	1 cut(s)	889
BspTNI	GGTCTC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	478, 699, 885
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	672, 684
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	5 cut(s)	262, 586, 748, 915, 947
BssMI	GATC	2 cut(s)	8, 865
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	3 cut(s)	264, 282, 750
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	636, 702
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	2 cut(s)	593, 944
BstDEI	CTNAG	5 cut(s)	144, 290, 532, 857, 960
BstF5I	GGATG	4 cut(s)	37, 484, 1021, 1035
BstKTI	GATC	2 cut(s)	11, 868
BstMAI	GTCTC	2 cut(s)	550, 631
BstMBI	GATC	2 cut(s)	8, 865
BstMWI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
BstNI	CCWGG	3 cut(s)	264, 282, 750
BstSCI	CCNGG	7 cut(s)	27, 202, 262, 280, 700, 748, 914
BstV1I	GCAGC	2 cut(s)	355, 812
BstV2I	GAAGAC	2 cut(s)	96, 235
BstX2I	RGATCY	2 cut(s)	8, 865
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	8, 865
BsuRI	GGCC	6 cut(s)	237, 382, 591, 747, 768, 914
BtsCI	GGATG	4 cut(s)	37, 484, 1021, 1035
BtsIMutI	CAGTG	2 cut(s)	287, 957
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	593, 944
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
Csp6I	GTAC	5 cut(s)	4, 21, 73, 905, 1033
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	4 cut(s)	509, 781, 814, 938
CviQI	GTAC	5 cut(s)	4, 21, 73, 905, 1033
DdeI	CTNAG	5 cut(s)	144, 290, 532, 857, 960
DpnI	GATC	2 cut(s)	10, 867
DpnII	GATC	2 cut(s)	8, 865
EaeI	YGGCCR	1 cut(s)	912
Eam1104I	CTCTTC	2 cut(s)	636, 702
EarI	CTCTTC	2 cut(s)	636, 702
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	25, 606
Eco57I	CTGAAG	2 cut(s)	537, 741
EcoRII	CCWGG	3 cut(s)	262, 280, 748
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	4 cut(s)	512, 784, 817, 941
FaiI	YATR	9 cut(s)	251, 510, 621, 639, 758, 782, 815, 911, 939
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	4 cut(s)	508, 780, 813, 937
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	344, 405, 826
FokI	GGATG	4 cut(s)	44, 491, 1022, 1028
Fsp4HI	GCNGC	3 cut(s)	344, 405, 826
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	344, 405, 826
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	6 cut(s)	237, 382, 591, 747, 768, 914
HapII	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	512, 784, 817, 941
HincII	GTYRAC	2 cut(s)	665, 736
HindII	GTYRAC	2 cut(s)	665, 736
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	4 cut(s)	14, 173, 207, 1050
HpaII	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
HphI	GGTGA	2 cut(s)	716, 908
Hpy166II	GTNNAC	3 cut(s)	492, 665, 736
Hpy188I	TCNGA	9 cut(s)	13, 56, 145, 186, 451, 951, 1006, 1067, 1079
Hpy188III	TCNNGA	4 cut(s)	170, 534, 989, 1047
Hpy8I	GTNNAC	3 cut(s)	492, 665, 736
Hpy99I	CGWCG	1 cut(s)	1010
HpyAV	CCTTC	4 cut(s)	181, 403, 716, 896
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	494, 624
HpyCH4V	TGCA	7 cut(s)	180, 371, 431, 595, 692, 728, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
HpyF3I	CTNAG	5 cut(s)	144, 290, 532, 857, 960
HpySE526I	ACGT	2 cut(s)	494, 624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	4 cut(s)	512, 784, 817, 941
Kzo9I	GATC	2 cut(s)	8, 865
LmnI	GCTCC	3 cut(s)	40, 284, 579
Lsp1109I	GCAGC	2 cut(s)	355, 812
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	2 cut(s)	494, 624
MalI	GATC	2 cut(s)	10, 867
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	8, 865
MboII	GAAGA	6 cut(s)	79, 101, 235, 311, 623, 719
MflI	RGATCY	2 cut(s)	8, 865
MhlI	GDGCHC	2 cut(s)	289, 584
MluCI	AATT	6 cut(s)	165, 445, 539, 596, 834, 978
MmeI	TCCRAC	2 cut(s)	557, 1029
Mph1103I	ATGCAT	1 cut(s)	373
MroXI	GAANNNNTTC	2 cut(s)	933, 998
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	774
MspI	CCGG	7 cut(s)	18, 29, 131, 203, 215, 701, 915
MspR9I	CCNGG	7 cut(s)	29, 204, 264, 282, 702, 750, 916
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	3 cut(s)	264, 282, 750
MwoI	GCNNNNNNNGC	4 cut(s)	588, 689, 920, 939
NciI	CCSGG	4 cut(s)	29, 204, 702, 916
NdeII	GATC	2 cut(s)	8, 865
NlaIII	CATG	4 cut(s)	512, 784, 817, 941
NlaIV	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
NmeAIII	GCCGAG	1 cut(s)	527
NsiI	ATGCAT	1 cut(s)	373
NspV	TTCGAA	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 571
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	2 cut(s)	933, 998
PfeI	GAWTC	4 cut(s)	14, 173, 207, 1050
PfoI	TCCNGGA	2 cut(s)	27, 280
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	345, 406, 827
Psp6I	CCWGG	3 cut(s)	262, 280, 748
PspGI	CCWGG	3 cut(s)	262, 280, 748
PspN4I	GGNNCC	5 cut(s)	10, 27, 238, 767, 867
PspPI	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
PsuI	RGATCY	2 cut(s)	8, 865
RsaI	GTAC	5 cut(s)	5, 22, 74, 906, 1034
RsaNI	GTAC	5 cut(s)	4, 21, 73, 905, 1033
RseI	CAYNNNNRTG	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	344, 405, 826
Sau3AI	GATC	2 cut(s)	8, 865
Sau96I	GGNCC	6 cut(s)	25, 236, 380, 606, 746, 766
ScrFI	CCNGG	7 cut(s)	29, 204, 264, 282, 702, 750, 916
SduI	GDGCHC	2 cut(s)	289, 584
SfaNI	GCATC	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	2 cut(s)	25, 606
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	6 cut(s)	165, 445, 539, 596, 834, 978
SsiI	CCGC	7 cut(s)	48, 62, 200, 225, 341, 404, 894
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	7 cut(s)	27, 202, 262, 280, 700, 748, 914
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	497, 627
TaqI	TCGA	2 cut(s)	231, 889
TasI	AATT	6 cut(s)	165, 445, 539, 596, 834, 978
TatI	WGTACW	3 cut(s)	72, 904, 1032
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	4 cut(s)	14, 173, 207, 1050
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	294, 964
TseI	GCWGC	2 cut(s)	343, 825
TspDTI	ATGAA	3 cut(s)	265, 525, 926
TspGWI	ACGGA	2 cut(s)	21, 580
TspRI	CASTG	2 cut(s)	294, 964
VpaK11BI	GGWCC	2 cut(s)	25, 606
XapI	RAATTY	1 cut(s)	445
XbaI	TCTAGA	1 cut(s)	169
XmnI	GAANNNNTTC	2 cut(s)	933, 998
XspI	CTAG	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.