Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

26123333 .. 26127089

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23730.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTACGCATCCGATTCGGTCCCGGATGATTTGGAGCGAACCGCTTTCCGAAAAGCCGAGAAGAAATACAAGCTCTATTACCAGGACACCTACAGAACCCCCAAGAAGAAAAAGCAACCGAAGCCGGTGGACTTATCTGAGGTTCTGGATTTCAAGTCGGTTCAGGAATTATACGATCGAAAGGCTGAGCTTCCGTCTGGAATCGTTCCGGTTCGGTGCGGTCTGGATCGTCCGGTTTTCGCCATAGAGAATCGTCCAGGATTTTATTTCATTCCGGGAGCACTGACTATAGAACAACAATGCCAATGGATCAAGGAGAGTTTAACCAGCTTTCCACAGCCTCCTAACAGAACAAATCACAATGCTTTTTATGGGCCTATAAATGATTTATTTATTGCAGCAAAAGAGAGGAAAGTTTTACTTGCAGAAGAGAATCCAAATTCTGAATATAATCCTTCTATCACCACTAGAGATGCTCAAGCATGGAAGTTCTGTGAGGAACATGAAGCATCATCAAAAGGAAACTCACGCAAATCAATATCAGCTTCAGTTCTATTGCGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGACTGGTCCAAGCGAAACTATGATATATCTCTCCCACATAAGAAGATTCCTGAAACACTCTGTCAACTGGCTAAAAAACTGGCAGCACCTGCAATGCCCTTGGGTGAAGATTTCCAGCCTGAAGCTGCAATAGTGAACTACTTTGGCTTAGGGGATATGCTTGGGGGGCACCTGGATGACATGGAAGCTGATTGGAGTAAGCCTATTGTAAGCATGAGTTTAGGTTGCAAAGCAATTTTCCTTCTGGGAGGAAAGCTTAGAGAGGATCCTCCATTAGCAATGTTCCTTCGAAGTGGTGATGTTGTACTTATGGCTGGAGAAGCAAGAGAATGCTTTCATGGCGTGCCTCGGATATTCACAGACGCAGAAAATGCTGAAATTGTGCCTCTTGAGCAGCAGTTGTCACATGAGGTTGATTCAAGTTTCTTAGAATACATCCAAACTTCAAGAATCAACATCAACATTCGACAAGTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

358

Amino Acids

40.55

Weight (kDa)

6.36

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	182 - 247	1e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc36I	ACCTGC	1 cut(s)	691
AccB1I	GGYRCC	1 cut(s)	762
AciI	CCGC	3 cut(s)	42, 219, 559
AclWI	GGATC	4 cut(s)	234, 317, 854, 867
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	531, 735
AfaI	GTAC	2 cut(s)	5, 900
AgsI	TTSAA	3 cut(s)	154, 1014, 1041
AjnI	CCWGG	3 cut(s)	81, 256, 765
AluBI	AGCT	7 cut(s)	73, 190, 330, 545, 719, 782, 850
AluI	AGCT	7 cut(s)	73, 190, 330, 545, 719, 782, 850
Alw21I	GWGCWC	2 cut(s)	283, 578
AlwI	GGATC	4 cut(s)	234, 317, 854, 867
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	374, 583
ApeKI	GCWGC	4 cut(s)	398, 677, 719, 988
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	19, 374, 600
AsuC2I	CCSGG	2 cut(s)	23, 276
AsuHPI	GGTGA	3 cut(s)	454, 710, 902
AsuII	TTCGAA	1 cut(s)	883
AvaII	GGWCC	2 cut(s)	19, 600
BaeGI	GKGCMC	1 cut(s)	765
BamHI	GGATCC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	283, 578
BbvI	GCAGC	4 cut(s)	410, 689, 706, 1000
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciT130I	CCWGG	3 cut(s)	83, 258, 767
BcnI	CCSGG	2 cut(s)	23, 276
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	2 cut(s)	91, 288
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	4 cut(s)	399, 678, 720, 989
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	4 cut(s)	400, 679, 721, 990
Bme1390I	CCNGG	5 cut(s)	23, 83, 258, 276, 767
Bme18I	GGWCC	2 cut(s)	19, 600
BmgT120I	GGNCC	3 cut(s)	19, 374, 600
BmiI	GGNNCC	3 cut(s)	21, 764, 861
BmrFI	CCNGG	5 cut(s)	23, 83, 258, 276, 767
BmsI	GCATC	3 cut(s)	17, 463, 518
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	742
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	883
BpuEI	CTTGAG	2 cut(s)	462, 1004
BpuMI	CCSGG	2 cut(s)	23, 276
BsaJI	CCNNGG	3 cut(s)	580, 693, 941
BsaWI	WCCGGW	2 cut(s)	208, 232
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	602, 666, 678
Bse3DI	GCAATG	2 cut(s)	693, 879
BseBI	CCWGG	3 cut(s)	83, 258, 767
BseDI	CCNNGG	3 cut(s)	580, 693, 941
BseGI	GGATG	4 cut(s)	8, 31, 775, 1029
BseMI	GCAATG	2 cut(s)	693, 879
BseMII	CTCAG	2 cut(s)	129, 177
BseNI	ACTGG	3 cut(s)	602, 666, 678
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	4 cut(s)	410, 689, 706, 1000
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	376, 585
BshNI	GGYRCC	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	283, 578
BsiSI	CCGG	5 cut(s)	23, 125, 209, 233, 275
BslFI	GGGAC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	376, 585
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	283, 578, 765
Bsp143I	GATC	4 cut(s)	175, 226, 309, 859
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	42, 219, 559
BspANI	GGCC	2 cut(s)	376, 585
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	3 cut(s)	21, 764, 861
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	4 cut(s)	234, 317, 854, 867
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	762
BsrDI	GCAATG	2 cut(s)	693, 879
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	602, 666, 678
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	580, 693, 941
BssMI	GATC	4 cut(s)	175, 226, 309, 859
BssT1I	CCWWGG	2 cut(s)	580, 693
Bst2UI	CCWGG	3 cut(s)	83, 258, 767
Bst6I	CTCTTC	1 cut(s)	423
BstAPI	GCANNNNNTGC	2 cut(s)	683, 965
BstBI	TTCGAA	1 cut(s)	883
BstC8I	GCNNGC	2 cut(s)	587, 938
BstDEI	CTNAG	5 cut(s)	138, 186, 742, 851, 1021
BstF5I	GGATG	4 cut(s)	8, 31, 775, 1029
BstKTI	GATC	4 cut(s)	178, 229, 312, 862
BstMBI	GATC	4 cut(s)	175, 226, 309, 859
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	9 cut(s)	121, 565, 582, 683, 760, 914, 933, 965, 985
BstNI	CCWGG	3 cut(s)	83, 258, 767
BstSCI	CCNGG	5 cut(s)	21, 81, 256, 274, 765
BstSFI	CTRYAG	2 cut(s)	91, 288
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	410, 689, 706, 1000
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuRI	GGCC	2 cut(s)	376, 585
BtsCI	GGATG	4 cut(s)	8, 31, 775, 1029
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	2 cut(s)	587, 938
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	19, 374, 600
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	4, 899
CviAII	CATG	6 cut(s)	483, 503, 775, 808, 932, 1001
CviQI	GTAC	2 cut(s)	4, 899
DdeI	CTNAG	5 cut(s)	138, 186, 742, 851, 1021
DpnI	GATC	4 cut(s)	177, 228, 311, 861
DpnII	GATC	4 cut(s)	175, 226, 309, 859
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	580, 693
Eco47I	GGWCC	2 cut(s)	19, 600
Eco57I	CTGAAG	2 cut(s)	531, 735
EcoRII	CCWGG	3 cut(s)	81, 256, 765
EcoT14I	CCWWGG	2 cut(s)	580, 693
ErhI	CCWWGG	2 cut(s)	580, 693
FaeI	CATG	6 cut(s)	486, 506, 778, 811, 935, 1004
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	6 cut(s)	482, 502, 774, 807, 931, 1000
Fnu4HI	GCNGC	4 cut(s)	399, 678, 720, 989
FokI	GGATG	3 cut(s)	38, 782, 1016
Fsp4HI	GCNGC	4 cut(s)	399, 678, 720, 989
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	4 cut(s)	399, 678, 720, 989
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	376, 585
HapII	CCGG	5 cut(s)	23, 125, 209, 233, 275
HgaI	GACGC	1 cut(s)	965
Hin1II	CATG	6 cut(s)	486, 506, 778, 811, 935, 1004
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	7 cut(s)	14, 201, 250, 433, 640, 1010, 1044
HpaII	CCGG	5 cut(s)	23, 125, 209, 233, 275
HphI	GGTGA	3 cut(s)	454, 710, 902
Hpy166II	GTNNAC	3 cut(s)	130, 659, 730
Hpy188I	TCNGA	6 cut(s)	13, 50, 139, 445, 945, 1073
Hpy188III	TCNNGA	7 cut(s)	146, 164, 198, 224, 644, 983, 1041
Hpy8I	GTNNAC	3 cut(s)	130, 659, 730
HpyAV	CCTTC	3 cut(s)	465, 845, 890
HpyCH4V	TGCA	6 cut(s)	398, 425, 589, 686, 722, 822
HpyF10VI	GCNNNNNNNGC	9 cut(s)	121, 565, 582, 683, 760, 914, 933, 965, 985
HpyF3I	CTNAG	5 cut(s)	138, 186, 742, 851, 1021
Hsp92II	CATG	6 cut(s)	486, 506, 778, 811, 935, 1004
Kzo9I	GATC	4 cut(s)	175, 226, 309, 859
LmnI	GCTCC	3 cut(s)	34, 278, 573
Lsp1109I	GCAGC	4 cut(s)	410, 689, 706, 1000
LweI	GCATC	3 cut(s)	17, 463, 518
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	996
MalI	GATC	4 cut(s)	177, 228, 311, 861
MboI	GATC	4 cut(s)	175, 226, 309, 859
MboII	GAAGA	5 cut(s)	73, 118, 440, 649, 713
MflI	RGATCY	1 cut(s)	859
MhlI	GDGCHC	3 cut(s)	283, 578, 765
MluCI	AATT	5 cut(s)	167, 439, 590, 828, 972
MmeI	TCCRAC	1 cut(s)	551
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	768
MspI	CCGG	5 cut(s)	23, 125, 209, 233, 275
MspR9I	CCNGG	5 cut(s)	23, 83, 258, 276, 767
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	3 cut(s)	83, 258, 767
MwoI	GCNNNNNNNGC	9 cut(s)	121, 565, 582, 683, 760, 914, 933, 965, 985
NciI	CCSGG	2 cut(s)	23, 276
NdeII	GATC	4 cut(s)	175, 226, 309, 859
NlaIII	CATG	6 cut(s)	486, 506, 778, 811, 935, 1004
NlaIV	GGNNCC	3 cut(s)	21, 764, 861
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	996
NspV	TTCGAA	1 cut(s)	883
PaqCI	CACCTGC	1 cut(s)	691
PctI	GAATGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	7 cut(s)	14, 201, 250, 433, 640, 1010, 1044
PfoI	TCCNGGA	3 cut(s)	21, 256, 274
PkrI	GCNGC	4 cut(s)	400, 679, 721, 990
Ple19I	CGATCG	1 cut(s)	178
Psp6I	CCWGG	3 cut(s)	81, 256, 765
PspGI	CCWGG	3 cut(s)	81, 256, 765
PspN4I	GGNNCC	3 cut(s)	21, 764, 861
PspPI	GGNCC	3 cut(s)	19, 374, 600
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	859
PvuI	CGATCG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	5, 900
RsaNI	GTAC	2 cut(s)	4, 899
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	4 cut(s)	399, 678, 720, 989
Sau3AI	GATC	4 cut(s)	175, 226, 309, 859
Sau96I	GGNCC	3 cut(s)	19, 374, 600
ScrFI	CCNGG	5 cut(s)	23, 83, 258, 276, 767
SduI	GDGCHC	3 cut(s)	283, 578, 765
SfaNI	GCATC	3 cut(s)	17, 463, 518
SfcI	CTRYAG	2 cut(s)	91, 288
SfuI	TTCGAA	1 cut(s)	883
SinI	GGWCC	2 cut(s)	19, 600
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	2 cut(s)	477, 983
SmoI	CTYRAG	2 cut(s)	477, 983
Sse9I	AATT	5 cut(s)	167, 439, 590, 828, 972
SsiI	CCGC	3 cut(s)	42, 219, 559
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	5 cut(s)	21, 81, 256, 274, 765
StyI	CCWWGG	2 cut(s)	580, 693
TaqI	TCGA	3 cut(s)	178, 883, 1060
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	5 cut(s)	167, 439, 590, 828, 972
TatI	WGTACW	1 cut(s)	898
TfiI	GAWTC	7 cut(s)	14, 201, 250, 433, 640, 1010, 1044
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	996
TseI	GCWGC	4 cut(s)	398, 677, 719, 988
Tsp45I	GTSAC	1 cut(s)	996
TspDTI	ATGAA	3 cut(s)	259, 519, 920
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	19, 600
XapI	RAATTY	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	927
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.