AT1G11860

glycine cleavage system catalyzes the degradation of glycine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4001113 .. 4003748
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11860.3

Sequence Viewer

Length: 1227 bp
ATGAGAGGTGGGAGTCTATGGCAGCTAGGGCAATCAATAACCCGTCGTCTTGCTCAATCTGACAAGAAGGTTGTGTCACGTCGCTACTTTGCCTCTGAAGCTGACCTGAAAAAGACTGCTCTTTACGACTTCCATGTTGCCCATGGAGGAAAGATGGTTCCTTTTGCTGGTTGGAGTATGCCAATTCAGTACAAAGATTCGATTATGGACTCAACGGTTAACTGCAGGGAAAATGGGAGTTTGTTTGATGTTGCACATATGTGTGGTTTGAGCCTTAAGGGTAAAGATTGTGTTCCTTTTCTTGAGACACTTGTGGTTGCTGATGTGGCTGGTTTGGCTCCTGGAACTGGGAGCTTAACTGTGTTCACAAACGAGAAAGGAGGTGCCATTGATGACTCGGTGATTACCAAAGTGACAGATGAACATATCTATTTGGTGGTCAATGCTGGCTGTAGGGATAAGGATTTGGCTCACATTGAAGAACACATGAAGGCTTTCAAATCCAAAGGAGGTGATGTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGGGTCCTTTGGCTGCTCCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGCAATTTCCAGATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGGTATACCGGGGAAGATGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGTGGATCTAGCAAAAGCAATCTTGGAGAAGTCCGAGGGTAAGGTAAGGCTTACGGGTCTAGGAGCAAGAGACAGTCTCAGGTTAGAAGCAGGACTTTGTCTATATGGAAACGACATGGAGCAACACATTTCTCCTGTTGAAGCTGGGCTCACATGGGCCATAGGGAAGCGTAGAAGAGCCGAAGGTGGATTTCTTGGCGCGGATGTGATTCTCCAGCAGCTTAAAGATGGACCTACAATCAGAAGGGTCGGTTTCTTCTCCTCAGGACCACCCGCAAGGTCGCATAGCGAGGTTCATGATGAGAGTGGGAACAAGATTGGAGAGATCACAAGTGGAGGGTTTAGCCCGAACCTGAAGAAGAACATAGCCATGGGATATGTGAAGTCAGGTCAGCACAAGACTGGGACTAAAGTCAAGATCTTGGTCCGTGGGAAACCATATGAAGGCAGCATCACGAAGATGCCATTCGTGGCCACCAAATACTACAAACCAACATGA

Protein Analysis

408

Amino Acids

44.44

Weight (kDa)

8.55

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCV_T PF01571 56 - 314 5e-71 GCVT N-terminal domain
GCV_T_C PF08669 339 - 415 7.2e-18 Glycine cleavage T-protein C-terminal barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 640
AccI GTMKAC 1 cut(s) 683
AccII CGCG 1 cut(s) 929
AciI CCGC 2 cut(s) 929, 1002
AclWI GGATC 1 cut(s) 741
AcoI YGGCCR 1 cut(s) 1200
AcuI CTGAAG 3 cut(s) 117, 542, 1103
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 167, 347, 640, 678, 1172
AflII CTTAAG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 4 cut(s) 479, 499, 587, 869
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 340, 671
AleI CACNNNNGTG 1 cut(s) 259
AloI GAACNNNNNNTCC 2 cut(s) 141, 173
AluBI AGCT 6 cut(s) 25, 101, 354, 616, 872, 949
AluI AGCT 6 cut(s) 25, 101, 354, 616, 872, 949
Alw26I GTCTC 4 cut(s) 299, 523, 792, 809
AlwI GGATC 1 cut(s) 741
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 2 cut(s) 885, 1200
ApeKI GCWGC 4 cut(s) 22, 572, 946, 1176
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 494
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 5 cut(s) 563, 885, 959, 995, 1153
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 2 cut(s) 412, 524
AvaII GGWCC 4 cut(s) 563, 959, 995, 1153
AxyI CCTNAGG 1 cut(s) 991
BalI TGGCCA 1 cut(s) 1202
BanI GGYRCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 879
BauI CACGAG 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 4 cut(s) 34, 559, 958, 1188
BccI CCATC 3 cut(s) 148, 689, 950
BciT130I CCWGG 2 cut(s) 342, 673
BcnI CCSGG 1 cut(s) 688
BcoDI GTCTC 4 cut(s) 299, 523, 792, 809
BfaI CTAG 3 cut(s) 26, 737, 788
BfmI CTRYAG 2 cut(s) 223, 451
BfrI CTTAAG 1 cut(s) 275
BglII AGATCT 2 cut(s) 542, 1146
BisI GCNGC 4 cut(s) 23, 573, 947, 1177
BlsI GCNGC 4 cut(s) 24, 574, 948, 1178
Bme1390I CCNGG 3 cut(s) 342, 673, 688
Bme18I GGWCC 4 cut(s) 563, 959, 995, 1153
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 5 cut(s) 563, 885, 959, 995, 1153
BmiI GGNNCC 6 cut(s) 159, 339, 385, 564, 655, 714
BmrFI CCNGG 3 cut(s) 342, 673, 688
BmrI ACTGGG 3 cut(s) 357, 687, 1140
BmsI GCATC 2 cut(s) 1179, 1188
BmuI ACTGGG 3 cut(s) 357, 687, 1140
BoxI GACNNNNGTC 1 cut(s) 1139
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 789, 821
BpmI CTGGAG 2 cut(s) 561, 926
BpuEI CTTGAG 2 cut(s) 323, 628
BpuMI CCSGG 1 cut(s) 688
BsaJI CCNNGG 5 cut(s) 142, 687, 762, 1098, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 347, 640, 678, 1172
Bse1I ACTGG 4 cut(s) 352, 578, 682, 1135
Bse21I CCTNAGG 1 cut(s) 991
BseBI CCWGG 2 cut(s) 342, 673
BseDI CCNNGG 5 cut(s) 142, 687, 762, 1098, 1156
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 5 cut(s) 167, 347, 640, 678, 1172
BseMII CTCAG 2 cut(s) 820, 1005
BseNI ACTGG 4 cut(s) 352, 578, 682, 1135
BseRI GAGGAG 1 cut(s) 979
BseXI GCAGC 4 cut(s) 34, 559, 958, 1188
BseYI CCCAGC 1 cut(s) 872
Bsh1236I CGCG 1 cut(s) 929
BshFI GGCC 2 cut(s) 887, 1202
BshNI GGYRCC 1 cut(s) 383
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 1 cut(s) 1147
BslI CCNNNNNNNGG 5 cut(s) 167, 347, 640, 678, 1172
BsmAI GTCTC 4 cut(s) 299, 523, 792, 809
BsmFI GGGAC 1 cut(s) 1147
BsnI GGCC 2 cut(s) 887, 1202
Bsp1286I GDGCHC 1 cut(s) 879
Bsp143I GATC 4 cut(s) 542, 733, 1053, 1146
Bsp19I CCATGG 2 cut(s) 142, 1098
BspACI CCGC 2 cut(s) 929, 1002
BspANI GGCC 2 cut(s) 887, 1202
BspCNI CTCAG 2 cut(s) 819, 1004
BspFNI CGCG 1 cut(s) 929
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 6 cut(s) 159, 339, 385, 564, 655, 714
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 898
BspT107I GGYRCC 1 cut(s) 383
BspTI CTTAAG 1 cut(s) 275
BsrI ACTGG 4 cut(s) 352, 578, 682, 1135
BssECI CCNNGG 5 cut(s) 142, 687, 762, 1098, 1156
BssMI GATC 4 cut(s) 542, 733, 1053, 1146
BssNAI GTATAC 1 cut(s) 684
BssSI CACGAG 1 cut(s) 520
BssT1I CCWWGG 2 cut(s) 142, 1098
Bst1107I GTATAC 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 520
Bst2UI CCWGG 2 cut(s) 342, 673
Bst4CI ACNGT 3 cut(s) 217, 361, 803
Bst6I CTCTTC 2 cut(s) 552, 898
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 448, 614, 726
BstDEI CTNAG 2 cut(s) 806, 991
BstDSI CCRYGG 3 cut(s) 142, 1098, 1156
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 1 cut(s) 929
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 4 cut(s) 545, 736, 1056, 1149
BstMAI GTCTC 4 cut(s) 299, 523, 792, 809
BstMBI GATC 4 cut(s) 542, 733, 1053, 1146
BstMWI GCNNNNNNNGC 4 cut(s) 28, 98, 326, 335
BstNI CCWGG 2 cut(s) 342, 673
BstNSI RCATGY 2 cut(s) 663, 728
BstPAI GACNNNNGTC 1 cut(s) 1139
BstSCI CCNGG 3 cut(s) 340, 671, 686
BstSFI CTRYAG 2 cut(s) 223, 451
BstUI CGCG 1 cut(s) 929
BstV1I GCAGC 4 cut(s) 34, 559, 958, 1188
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 3 cut(s) 542, 733, 1146
BstYI RGATCY 3 cut(s) 542, 733, 1146
BstZ17I GTATAC 1 cut(s) 684
Bsu36I CCTNAGG 1 cut(s) 991
BsuRI GGCC 2 cut(s) 887, 1202
BtgI CCRYGG 3 cut(s) 142, 1098, 1156
BtrI CACGTC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 3 cut(s) 448, 614, 726
CaiI CAGNNNCTG 1 cut(s) 640
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 929
Cfr13I GGNCC 5 cut(s) 563, 885, 959, 995, 1153
Csp6I GTAC 1 cut(s) 190
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 806, 991
DpnI GATC 4 cut(s) 544, 735, 1055, 1148
DpnII GATC 4 cut(s) 542, 733, 1053, 1146
EaeI YGGCCR 1 cut(s) 1200
Eam1104I CTCTTC 2 cut(s) 552, 898
EarI CTCTTC 2 cut(s) 552, 898
Eco130I CCWWGG 2 cut(s) 142, 1098
Eco24I GRGCYC 1 cut(s) 879
Eco47I GGWCC 4 cut(s) 563, 959, 995, 1153
Eco57I CTGAAG 3 cut(s) 117, 542, 1103
Eco81I CCTNAGG 1 cut(s) 991
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 340, 671
EcoT14I CCWWGG 2 cut(s) 142, 1098
EcoT38I GRGCYC 1 cut(s) 879
ErhI CCWWGG 2 cut(s) 142, 1098
FalI AAGNNNNNCTT 4 cut(s) 605, 637, 807, 839
FaqI GGGAC 1 cut(s) 1147
FauI CCCGC 1 cut(s) 1009
FauNDI CATATG 2 cut(s) 258, 1168
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 4 cut(s) 23, 573, 947, 1177
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 4 cut(s) 23, 573, 947, 1177
FspBI CTAG 3 cut(s) 26, 737, 788
GlaI GCGC 1 cut(s) 928
GluI GCNGC 4 cut(s) 23, 573, 947, 1177
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 2 cut(s) 561, 926
HaeIII GGCC 2 cut(s) 887, 1202
HapII CCGG 1 cut(s) 687
HhaI GCGC 1 cut(s) 929
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 6 cut(s) 13, 197, 209, 395, 637, 937
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 687
HphI GGTGA 2 cut(s) 412, 524
Hpy166II GTNNAC 3 cut(s) 220, 366, 684
Hpy188I TCNGA 4 cut(s) 61, 97, 763, 971
Hpy188III TCNNGA 8 cut(s) 302, 634, 641, 716, 993, 1025, 1144, 1183
Hpy8I GTNNAC 3 cut(s) 220, 366, 684
Hpy99I CGWCG 3 cut(s) 48, 84, 539
HpyAV CCTTC 6 cut(s) 61, 484, 566, 905, 966, 1166
HpyCH4III ACNGT 3 cut(s) 217, 361, 803
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 225, 254
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 98, 326, 335
HpyF3I CTNAG 2 cut(s) 806, 991
HpySE526I ACGT 1 cut(s) 79
HspAI GCGC 1 cut(s) 927
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 4 cut(s) 542, 733, 1053, 1146
LguI GCTCTTC 1 cut(s) 898
LmnI GCTCC 5 cut(s) 343, 351, 580, 791, 847
Lsp1109I GCAGC 4 cut(s) 34, 559, 958, 1188
LweI GCATC 2 cut(s) 1179, 1188
MaeI CTAG 3 cut(s) 26, 737, 788
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 75, 412
MalI GATC 4 cut(s) 544, 735, 1055, 1148
MboI GATC 4 cut(s) 542, 733, 1053, 1146
MboII GAAGA 9 cut(s) 491, 539, 614, 704, 915, 976, 1096, 1099, 1198
MflI RGATCY 3 cut(s) 542, 733, 1146
MhlI GDGCHC 1 cut(s) 879
MlsI TGGCCA 1 cut(s) 1202
MluCI AATT 2 cut(s) 183, 628
MluNI TGGCCA 1 cut(s) 1202
MlyI GAGTC 3 cut(s) 22, 203, 389
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 8 cut(s) 103, 140, 374, 503, 757, 1000, 1012, 1058
Mox20I TGGCCA 1 cut(s) 1202
MroXI GAANNNNTTC 1 cut(s) 494
MscI TGGCCA 1 cut(s) 1202
MseI TTAA 5 cut(s) 219, 276, 356, 648, 951
MslI CAYNNNNRTG 4 cut(s) 259, 261, 1097, 1187
Msp20I TGGCCA 1 cut(s) 1202
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 3 cut(s) 342, 673, 688
MvaI CCWGG 2 cut(s) 342, 673
MvnI CGCG 1 cut(s) 929
MwoI GCNNNNNNNGC 4 cut(s) 28, 98, 326, 335
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 2 cut(s) 142, 1098
NdeI CATATG 2 cut(s) 258, 1168
NdeII GATC 4 cut(s) 542, 733, 1053, 1146
NlaIV GGNNCC 6 cut(s) 159, 339, 385, 564, 655, 714
NmuCI GTSAC 2 cut(s) 75, 412
NspI RCATGY 2 cut(s) 663, 728
OliI CACNNNNGTG 1 cut(s) 259
PaeI GCATGC 1 cut(s) 728
PagI TCATGA 1 cut(s) 1024
PciI ACATGT 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 898
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 197, 637, 937
PflFI GACNNNGTC 1 cut(s) 825
PflMI CCANNNNNTGG 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 4 cut(s) 24, 574, 948, 1178
PleI GAGTC 3 cut(s) 21, 203, 389
PpsI GAGTC 3 cut(s) 21, 203, 389
PpuMI RGGWCCY 1 cut(s) 563
PscI ACATGT 1 cut(s) 659
PshAI GACNNNNGTC 1 cut(s) 1139
PshBI ATTAAT 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 340, 671
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 2 cut(s) 340, 671
PspN4I GGNNCC 6 cut(s) 159, 339, 385, 564, 655, 714
PspPI GGNCC 5 cut(s) 563, 885, 959, 995, 1153
PspPPI RGGWCCY 1 cut(s) 563
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 3 cut(s) 542, 733, 1146
PsyI GACNNNGTC 1 cut(s) 825
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 4 cut(s) 259, 261, 1097, 1187
SapI GCTCTTC 1 cut(s) 898
SaqAI TTAA 5 cut(s) 219, 276, 356, 648, 951
SatI GCNGC 4 cut(s) 23, 573, 947, 1177
Sau3AI GATC 4 cut(s) 542, 733, 1053, 1146
Sau96I GGNCC 5 cut(s) 563, 885, 959, 995, 1153
SchI GAGTC 3 cut(s) 22, 203, 389
ScrFI CCNGG 3 cut(s) 342, 673, 688
SduI GDGCHC 1 cut(s) 879
SfaNI GCATC 2 cut(s) 1179, 1188
SfcI CTRYAG 2 cut(s) 223, 451
SinI GGWCC 4 cut(s) 563, 959, 995, 1153
SmiMI CAYNNNNRTG 4 cut(s) 259, 261, 1097, 1187
SmlI CTYRAG 3 cut(s) 275, 302, 607
SmoI CTYRAG 3 cut(s) 275, 302, 607
SphI GCATGC 1 cut(s) 728
Sse9I AATT 2 cut(s) 183, 628
SsiI CCGC 2 cut(s) 929, 1002
SspMI CTAG 3 cut(s) 26, 737, 788
StyD4I CCNGG 3 cut(s) 340, 671, 686
StyI CCWWGG 2 cut(s) 142, 1098
TaaI ACNGT 3 cut(s) 217, 361, 803
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 183, 628
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 197, 637, 937
Tru1I TTAA 5 cut(s) 219, 276, 356, 648, 951
Tru9I TTAA 5 cut(s) 219, 276, 356, 648, 951
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 75, 412
TseI GCWGC 4 cut(s) 22, 572, 946, 1176
Tsp45I GTSAC 2 cut(s) 75, 412
TspDTI ATGAA 4 cut(s) 435, 503, 1013, 1185
TspGWI ACGGA 1 cut(s) 1145
TspRI CASTG 1 cut(s) 585
Tth111I GACNNNGTC 1 cut(s) 825
Van91I CCANNNNNTGG 1 cut(s) 640
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 4 cut(s) 563, 959, 995, 1153
VspI ATTAAT 1 cut(s) 648
XceI RCATGY 2 cut(s) 663, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 3 cut(s) 26, 737, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.