FvH4_3g01820

The glycine cleavage system catalyzes the degradation of glycine

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
933825 .. 937208
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01820.t1

Sequence Viewer

Length: 1227 bp
ATGAGAGGAGGGGGTTTGTGGCAGCTTGGTCAGTCAATCACCCGACGTCTTGCTCAGGGTGATAAGAAGGGTGTGGCTCGTCGCTACTTTGCTTCAGAAGCTGAGCTCAAAAAGACAGTTCTTTATGACTTCCATGTCGCTAATGGTGGGAAGATGGTGCCGTTTGCTGGATGGGGCATGCCTATTCAGTATAAGGACTCGATTATGGACTCCACTGTGAACTGTAGGGAGAACGGTGGGCTTTTTGATGTCTCTCATATGTGTGGCCTGAGTCTCAAGGGGAAGGACTCCATTCCGTTCCTTGAGAAGCTGGTCATTGCTGATGTTGCTGGTCTGGCCCCTGGAACGGGGACACTAACTGTCTTTACAAATGAGAAGGGAGGGGCAATTGATGACTCTGTTGTCACCAAGGTCACTGATGACCACATATACTTGGTGGTGAATGCTGGATGTAGGGATAAGGATTTGGCTCACATTGAGGAGCACATGAAGGCATTCAAGGCCAAAGGAGGAGACGTCTCATGGCACATTCATGATGAGAGATCTCTTCTAGCTCTTCAGGGTCCTCTTGCTGCCCCAACTCTTCAACACTTGACAAAAGAAGATTTGAGCAAGTTTTATTTCGGAGAGTTCCGAATTTTGGATATCAATGGGGCACACTGCTTTCTCACTAGGACTGGGTACACTGGTGAAGATGGATTTGAAATCTCAGTTCCTGATGAGAATGCATTGGATCTTGCCAAAGCAATCTTGGAGAAATCTGAGGGGAAGGTGAGACTGACTGGATTGGGAGCTCGTGATAGTCTCCGATTGGAAGCTGGTTTGTGTTTATATGGTAATGATATGGAGCAACACATAACACCAGTGGAGGCTGGGCTCACATGGGCTATAGGCAAGAGAAGAAGGGCAGAAGGTGGCTTTCTTGGAGCTGAGGTGATTCTCAAACAACTTGCTGATGGTCCTTCGATCAGGCGTGCTGGTTTCATCTCTTCAGGCCCTCCTGCTAGAGGTCACAGTGAGATTCAGAATGAGAAAGGTGAAACCATTGGGGAAGTGACAAGTGGAGGATTCAGCCCTTGCCTGAAGAAAAATATTGCTATGGGGTACGTGAAATCTGGAAACCACAAGGCTGGAACAAAAGTTAAGATTGTTGTGCGAGGAAAGGCCTATGATGGAACTGTCACTAAAATGCCTTTTGTACCAACAAAATACTACAAGCCAACCTAA

Protein Analysis

409

Amino Acids

44.2

Weight (kDa)

8.69

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCV_T PF01571 41 - 299 3.7e-73 GCVT N-terminal domain
GCV_T_C PF08669 327 - 400 3.5e-19 Glycine cleavage T-protein C-terminal barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 134, 401
AatII GACGTC 2 cut(s) 49, 519
AccB1I GGYRCC 1 cut(s) 157
AclWI GGATC 1 cut(s) 741
AcsI RAATTY 1 cut(s) 636
AcuI CTGAAG 4 cut(s) 78, 542, 975, 1103
AcyI GRCGYC 2 cut(s) 46, 516
AfaI GTAC 3 cut(s) 683, 1106, 1200
AfiI CCNNNNNNNGG 5 cut(s) 167, 346, 347, 640, 1007
AgsI TTSAA 3 cut(s) 499, 587, 704
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 8 cut(s) 25, 101, 106, 310, 554, 794, 818, 929
AluI AGCT 8 cut(s) 25, 101, 106, 310, 554, 794, 818, 929
Alw21I GWGCWC 3 cut(s) 108, 486, 796
Alw26I GTCTC 6 cut(s) 256, 278, 507, 523, 769, 809
AlwI GGATC 1 cut(s) 741
AlwNI CAGNNNCTG 2 cut(s) 101, 716
AoxI GGCC 5 cut(s) 265, 336, 501, 994, 1164
ApeKI GCWGC 2 cut(s) 22, 572
ApoI RAATTY 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 494
AspS9I GGNCC 4 cut(s) 337, 563, 959, 995
AsuHPI GGTGA 8 cut(s) 31, 71, 397, 451, 701, 784, 946, 1049
AvaII GGWCC 2 cut(s) 563, 959
BaeGI GKGCMC 1 cut(s) 658
BaeI ACNNNNGTAYC 2 cut(s) 673, 706
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 3 cut(s) 108, 796, 879
BauI CACGAG 1 cut(s) 795
Bbv12I GWGCWC 3 cut(s) 108, 486, 796
BbvCI CCTCAGC 1 cut(s) 930
BbvI GCAGC 2 cut(s) 34, 559
BccI CCATC 5 cut(s) 148, 165, 689, 950, 1166
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 6 cut(s) 256, 278, 507, 523, 769, 809
BfaI CTAG 3 cut(s) 551, 672, 1005
BfmI CTRYAG 2 cut(s) 223, 888
BglII AGATCT 1 cut(s) 542
BisI GCNGC 2 cut(s) 23, 573
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 24, 574
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 563, 959
BmgT120I GGNCC 4 cut(s) 337, 563, 959, 995
BmiI GGNNCC 3 cut(s) 159, 339, 564
BmrFI CCNGG 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 687
Bpu10I CCTNAGC 2 cut(s) 54, 930
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 260, 323
BsaAI YACGTR 1 cut(s) 1108
BsaHI GRCGYC 2 cut(s) 46, 516
BsaJI CCNNGG 2 cut(s) 340, 408
BsaXI ACNNNNNCTCC 4 cut(s) 501, 531, 918, 948
Bsc4I CCNNNNNNNGG 5 cut(s) 167, 346, 347, 640, 1007
Bse1I ACTGG 4 cut(s) 682, 691, 787, 863
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 340, 408
BseGI GGATG 2 cut(s) 176, 455
BseLI CCNNNNNNNGG 5 cut(s) 167, 346, 347, 640, 1007
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 6 cut(s) 68, 93, 260, 723, 753, 921
BseNI ACTGG 4 cut(s) 682, 691, 787, 863
BseRI GAGGAG 3 cut(s) 21, 494, 525
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 2 cut(s) 34, 559
BseYI CCCAGC 1 cut(s) 872
BshFI GGCC 5 cut(s) 267, 338, 503, 996, 1166
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 108, 486, 796
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 5 cut(s) 167, 346, 347, 640, 1007
BsmAI GTCTC 6 cut(s) 256, 278, 507, 523, 769, 809
BsmBI CGTCTC 2 cut(s) 507, 523
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 3 cut(s) 448, 494, 730
BsnI GGCC 5 cut(s) 267, 338, 503, 996, 1166
Bsp1286I GDGCHC 5 cut(s) 108, 486, 658, 796, 879
Bsp143I GATC 3 cut(s) 542, 733, 966
Bsp1720I GCTNAGC 1 cut(s) 102
BspANI GGCC 5 cut(s) 267, 338, 503, 996, 1166
BspCNI CTCAG 6 cut(s) 67, 94, 261, 722, 754, 922
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 159, 339, 564
BspPI GGATC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 4 cut(s) 682, 691, 787, 863
BssECI CCNNGG 2 cut(s) 340, 408
BssMI GATC 3 cut(s) 542, 733, 966
BssNI GRCGYC 2 cut(s) 46, 516
BssSI CACGAG 1 cut(s) 795
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 795
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 7 cut(s) 118, 217, 224, 236, 361, 1016, 1180
Bst6I CTCTTC 4 cut(s) 552, 561, 588, 994
BstACI GRCGYC 2 cut(s) 46, 516
BstBAI YACGTR 1 cut(s) 1108
BstC8I GCNNGC 2 cut(s) 179, 975
BstDEI CTNAG 6 cut(s) 54, 102, 269, 709, 762, 930
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 2 cut(s) 176, 455
BstKTI GATC 3 cut(s) 545, 736, 969
BstMAI GTCTC 6 cut(s) 256, 278, 507, 523, 769, 809
BstMBI GATC 3 cut(s) 542, 733, 966
BstMWI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 223, 888
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 2 cut(s) 34, 559
BstX2I RGATCY 2 cut(s) 542, 733
BstXI CCANNNNNNTGG 1 cut(s) 1130
BstYI RGATCY 2 cut(s) 542, 733
BsuRI GGCC 5 cut(s) 267, 338, 503, 996, 1166
BtsCI GGATG 2 cut(s) 176, 455
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 6 cut(s) 213, 414, 658, 684, 870, 1021
Cac8I GCNNGC 2 cut(s) 179, 975
CaiI CAGNNNCTG 2 cut(s) 101, 716
CciI TCATGA 1 cut(s) 532
Cfr13I GGNCC 4 cut(s) 337, 563, 959, 995
Csp6I GTAC 3 cut(s) 682, 1105, 1199
CviAII CATG 6 cut(s) 134, 178, 487, 522, 533, 882
CviQI GTAC 3 cut(s) 682, 1105, 1199
DdeI CTNAG 6 cut(s) 54, 102, 269, 709, 762, 930
DpnI GATC 3 cut(s) 544, 735, 968
DpnII GATC 3 cut(s) 542, 733, 966
DrdI GACNNNNNNGTC 2 cut(s) 134, 401
DseDI GACNNNNNNGTC 2 cut(s) 134, 401
Eam1104I CTCTTC 4 cut(s) 552, 561, 588, 994
EarI CTCTTC 4 cut(s) 552, 561, 588, 994
Ecl136II GAGCTC 2 cut(s) 106, 794
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 1166
Eco24I GRGCYC 3 cut(s) 108, 796, 879
Eco32I GATATC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 563, 959
Eco53kI GAGCTC 2 cut(s) 106, 794
Eco57I CTGAAG 4 cut(s) 78, 542, 975, 1103
EcoICRI GAGCTC 2 cut(s) 106, 794
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 2 cut(s) 563, 995
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 730
EcoT38I GRGCYC 3 cut(s) 108, 796, 879
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 507, 523
FaeI CATG 6 cut(s) 137, 181, 490, 525, 536, 885
FaqI GGGAC 1 cut(s) 364
FatI CATG 6 cut(s) 133, 177, 486, 521, 532, 881
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 23, 573
FokI GGATG 2 cut(s) 183, 462
FriOI GRGCYC 3 cut(s) 108, 796, 879
Fsp4HI GCNGC 2 cut(s) 23, 573
FspBI CTAG 3 cut(s) 551, 672, 1005
GluI GCNGC 2 cut(s) 23, 573
GsaI CCCAGC 1 cut(s) 876
HaeIII GGCC 5 cut(s) 267, 338, 503, 996, 1166
Hin1I GRCGYC 2 cut(s) 46, 516
Hin1II CATG 6 cut(s) 137, 181, 490, 525, 536, 885
HinfI GANTC 8 cut(s) 197, 209, 271, 287, 395, 937, 1021, 1068
HphI GGTGA 8 cut(s) 31, 71, 397, 451, 701, 784, 946, 1049
Hpy166II GTNNAC 2 cut(s) 220, 684
Hpy188I TCNGA 6 cut(s) 97, 626, 635, 763, 809, 1026
Hpy188III TCNNGA 4 cut(s) 533, 716, 797, 1116
Hpy8I GTNNAC 2 cut(s) 220, 684
Hpy99I CGWCG 2 cut(s) 48, 84
HpyAV CCTTC 8 cut(s) 61, 277, 370, 484, 763, 897, 905, 972
HpyCH4III ACNGT 7 cut(s) 118, 217, 224, 236, 361, 1016, 1180
HpyCH4IV ACGT 3 cut(s) 46, 516, 1107
HpyCH4V TGCA 1 cut(s) 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
HpyF3I CTNAG 6 cut(s) 54, 102, 269, 709, 762, 930
HpySE526I ACGT 3 cut(s) 46, 516, 1107
Hsp92I GRCGYC 2 cut(s) 46, 516
Hsp92II CATG 6 cut(s) 137, 181, 490, 525, 536, 885
Kzo9I GATC 3 cut(s) 542, 733, 966
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 4 cut(s) 481, 791, 847, 926
Lsp1109I GCAGC 2 cut(s) 34, 559
MaeI CTAG 3 cut(s) 551, 672, 1005
MaeII ACGT 3 cut(s) 46, 516, 1107
MaeIII GTNAC 5 cut(s) 403, 412, 1010, 1054, 1180
MalI GATC 3 cut(s) 544, 735, 968
MboI GATC 3 cut(s) 542, 733, 966
MboII GAAGA 9 cut(s) 163, 539, 548, 575, 614, 704, 912, 981, 1096
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 2 cut(s) 542, 733
MhlI GDGCHC 5 cut(s) 108, 486, 658, 796, 879
MluCI AATT 2 cut(s) 387, 636
MlyI GAGTC 5 cut(s) 191, 203, 280, 281, 389
Mph1103I ATGCAT 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 494
MseI TTAA 1 cut(s) 1143
MslI CAYNNNNRTG 3 cut(s) 261, 531, 1187
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 3 cut(s) 448, 494, 730
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
NdeI CATATG 1 cut(s) 258
NdeII GATC 3 cut(s) 542, 733, 966
NlaIII CATG 6 cut(s) 137, 181, 490, 525, 536, 885
NlaIV GGNNCC 3 cut(s) 159, 339, 564
NmuCI GTSAC 5 cut(s) 403, 412, 1010, 1054, 1180
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PagI TCATGA 1 cut(s) 532
PceI AGGCCT 1 cut(s) 1166
PciSI GCTCTTC 1 cut(s) 561
PctI GAATGC 3 cut(s) 448, 494, 730
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 3 cut(s) 937, 1021, 1068
PkrI GCNGC 2 cut(s) 24, 574
PleI GAGTC 5 cut(s) 191, 203, 279, 281, 389
PpsI GAGTC 5 cut(s) 191, 203, 279, 281, 389
Ppu21I YACGTR 1 cut(s) 1108
PpuMI RGGWCCY 1 cut(s) 563
Psp124BI GAGCTC 2 cut(s) 108, 796
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 159, 339, 564
PspPI GGNCC 4 cut(s) 337, 563, 959, 995
PspPPI RGGWCCY 1 cut(s) 563
PstNI CAGNNNCTG 2 cut(s) 101, 716
PsuI RGATCY 2 cut(s) 542, 733
RsaI GTAC 3 cut(s) 683, 1106, 1200
RsaNI GTAC 3 cut(s) 682, 1105, 1199
RseI CAYNNNNRTG 3 cut(s) 261, 531, 1187
SacI GAGCTC 2 cut(s) 108, 796
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 1143
SatI GCNGC 2 cut(s) 23, 573
Sau3AI GATC 3 cut(s) 542, 733, 966
Sau96I GGNCC 4 cut(s) 337, 563, 959, 995
SchI GAGTC 5 cut(s) 191, 203, 280, 281, 389
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 5 cut(s) 108, 486, 658, 796, 879
SfcI CTRYAG 2 cut(s) 223, 888
SinI GGWCC 2 cut(s) 563, 959
SmiMI CAYNNNNRTG 3 cut(s) 261, 531, 1187
SmlI CTYRAG 2 cut(s) 275, 302
SmoI CTYRAG 2 cut(s) 275, 302
SphI GCATGC 1 cut(s) 181
Sse9I AATT 2 cut(s) 387, 636
SseBI AGGCCT 1 cut(s) 1166
SspI AATATT 1 cut(s) 1093
SspMI CTAG 3 cut(s) 551, 672, 1005
SstI GAGCTC 2 cut(s) 108, 796
StuI AGGCCT 1 cut(s) 1166
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 7 cut(s) 118, 217, 224, 236, 361, 1016, 1180
TaiI ACGT 3 cut(s) 49, 519, 1110
TaqI TCGA 2 cut(s) 200, 965
TasI AATT 2 cut(s) 387, 636
TfiI GAWTC 3 cut(s) 937, 1021, 1068
Tru1I TTAA 1 cut(s) 1143
Tru9I TTAA 1 cut(s) 1143
TscAI CASTG 6 cut(s) 220, 421, 665, 691, 870, 1021
TseFI GTSAC 5 cut(s) 403, 412, 1010, 1054, 1180
TseI GCWGC 2 cut(s) 22, 572
Tsp45I GTSAC 5 cut(s) 403, 412, 1010, 1054, 1180
TspDTI ATGAA 3 cut(s) 503, 521, 973
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 6 cut(s) 220, 421, 665, 691, 870, 1021
VpaK11BI GGWCC 2 cut(s) 563, 959
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 748
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 3 cut(s) 551, 672, 1005
ZraI GACGTC 2 cut(s) 47, 517
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.