Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007339

Physical Location & Seq

Genomic Coordinates Forward (+)

28380000 .. 28381762

Gene Structure 1763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTGCCTTTCGCTGGATGGGGAATGCCTATTCAGTACAAGGACTCAATCATCGATTCCACCATAAACTGCAGGCAGAATGGTAGTCTGTTTGATGTCTCCCATATGTGTGGGCTGAGCCTTAAGGGGAAGGATTCCATTTCTTTCCTTGAAAAGCTTGTCATTGCTGATGTTGCTTCGCTTGCCCCTGGAACGGGGACACTCACTGTCTTTACAAATGAGAAGGGAGGGGCAATTGATGACTCTGTGATTACCAAGGTTACTGACGACCACATATACCTGGTGGTGAATGCTGGATGTAGGGATAAAGATCTTGCTCACATAGAAGAGCATATGAAGGCATTCAAGGCTAAAGGGGGAGATGTCTCATGGCACATCCATGATGAGAGATCCCTTCTAGCTCTCCAGGGTCCTCTTGCTGCCCCAACCCTTCAACACTTGACAAAAGAGGATTTGAGCAAGTTATATTTTGGAGAGTTCCGAATTTTGGAAATCAATGGTGCACACTGCTTTCTCACAAGGACTGGGTACACCGGTGAAGATGGATTTGAAATCTCGGTTCCTGATGAGAATGCAGTGGATCTTGCCAAGGCAATCTTGGAGAAATCCGAGGGGAAGGTGAGGCTGACAGGTCTGGGTGCTCGTGACAGTCTCCGACTGGAAGCTGGGTTGTGTTTATATGGCAATGATATGGAGCAACACACAACACCAGTGGAGGCTGGACTCACATGGGCCATAGGGAAGAGAAGAAGGGCAGAGGGCGGCTTTCTTGGTGCTGAGGTAATACTCAAGCAACTCGAGGAAGGTCCTAAAATCCGGCGTGCTGGTTTCATCTCATCAGGTCCACCTGCTAGAAGCCACAGCGAGATTCAGAACGAGAAAGGTGAAACCATTGGGGAAGTCACAAGTGGAGGATTTAGCCCCTGCCTGAAGAAAAACATAGCGATGGGGTACGTGAAGTCTGGATCGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010035 GO:0010038 GO:0016020 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko00670 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map00670 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

325

Amino Acids

35.0

Weight (kDa)

5.84

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11860 AT1G11860 AT1G11860
fragaria_vesca	FvH4_3g01820 FvH4_3g01820 FvH4_3g01820
malus_domestica	MD05G1348800.v1.1 MD10G1323700.v1.1
prunus_persica	Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1
pyrus_communis	pycom05g31640 pycom10g27410
rosa_chinensis	RchiOBHm_Chr5g0002651
rosa_laevigata	RLG00000031050
rosa_multiflora	Rmu_co8214212.1_g000001 Rmu_sc0009084.1_g000015
rosa_roxburghii	Rroxscaffold_1G00073210
rosa_rugosa	Rorug04G0398100 Rorug04G0398200
rosa_samantha	Rh5AG021500 Rh5BG024200 Rh5CG023700 Rh5DG022600
rosa_wichuraiana	Rw5G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	856
Acc36I	ACCTGC	1 cut(s)	856
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	3 cut(s)	384, 588, 973
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	3 cut(s)	38, 530, 953
AfiI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
AflII	CTTAAG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	4 cut(s)	152, 346, 434, 551
AjnI	CCWGG	3 cut(s)	187, 279, 405
AluBI	AGCT	3 cut(s)	157, 401, 665
AluI	AGCT	3 cut(s)	157, 401, 665
Alw21I	GWGCWC	2 cut(s)	505, 643
Alw26I	GTCTC	3 cut(s)	103, 370, 656
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	3 cut(s)	384, 588, 973
Ama87I	CYCGRG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	732
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	483
AsiGI	ACCGGT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	4 cut(s)	410, 732, 806, 842
AsuHPI	GGTGA	4 cut(s)	298, 548, 631, 896
AvaI	CYCGRG	1 cut(s)	797
AvaII	GGWCC	3 cut(s)	410, 806, 842
BaeGI	GKGCMC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	2 cut(s)	505, 643
BbvCI	CCTCAGC	1 cut(s)	777
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	3 cut(s)	12, 536, 940
BciT130I	CCWGG	3 cut(s)	189, 281, 407
BcoDI	GTCTC	3 cut(s)	103, 370, 656
BfaI	CTAG	2 cut(s)	398, 852
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	856
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	2 cut(s)	420, 763
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	2 cut(s)	421, 764
Bme1390I	CCNGG	3 cut(s)	189, 281, 407
Bme18I	GGWCC	3 cut(s)	410, 806, 842
BmeT110I	CYCGRG	1 cut(s)	797
BmgT120I	GGNCC	4 cut(s)	410, 732, 806, 842
BmiI	GGNNCC	3 cut(s)	6, 411, 561
BmrFI	CCNGG	3 cut(s)	189, 281, 407
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	389
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	773
Bsa29I	ATCGAT	2 cut(s)	54, 968
BsaAI	YACGTR	1 cut(s)	955
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	187, 255, 406, 588, 609
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	3 cut(s)	529, 663, 710
Bse3DI	GCAATG	2 cut(s)	162, 691
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	189, 281, 407
BseCI	ATCGAT	2 cut(s)	54, 968
BseDI	CCNNGG	5 cut(s)	187, 255, 406, 588, 609
BseGI	GGATG	3 cut(s)	23, 302, 375
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
BseMI	GCAATG	2 cut(s)	162, 691
BseMII	CTCAG	2 cut(s)	107, 768
BseNI	ACTGG	3 cut(s)	529, 663, 710
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	665
BshFI	GGCC	1 cut(s)	734
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	533
BshVI	ATCGAT	2 cut(s)	54, 968
BsiHKAI	GWGCWC	2 cut(s)	505, 643
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	2 cut(s)	534, 817
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
BsmAI	GTCTC	3 cut(s)	103, 370, 656
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	4 cut(s)	30, 295, 341, 577
BsnI	GGCC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	797
Bsp1286I	GDGCHC	2 cut(s)	505, 643
Bsp143I	GATC	5 cut(s)	310, 389, 580, 965, 969
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	1 cut(s)	734
BspCNI	CTCAG	2 cut(s)	108, 769
BspDI	ATCGAT	2 cut(s)	54, 968
BspLI	GGNNCC	3 cut(s)	6, 411, 561
BspMAI	CTGCAG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	856
BspPI	GGATC	3 cut(s)	384, 588, 973
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	162, 691
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	3 cut(s)	529, 663, 710
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	5 cut(s)	187, 255, 406, 588, 609
BssMI	GATC	5 cut(s)	310, 389, 580, 965, 969
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	255, 588
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	189, 281, 407
Bst4CI	ACNGT	2 cut(s)	208, 650
Bst6I	CTCTTC	2 cut(s)	321, 737
BstAFI	CTTAAG	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	955
BstC8I	GCNNGC	3 cut(s)	74, 183, 822
BstDEI	CTNAG	2 cut(s)	116, 777
BstF5I	GGATG	3 cut(s)	23, 302, 375
BstKTI	GATC	5 cut(s)	313, 392, 583, 968, 972
BstMAI	GTCTC	3 cut(s)	103, 370, 656
BstMBI	GATC	5 cut(s)	310, 389, 580, 965, 969
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
BstNI	CCWGG	3 cut(s)	189, 281, 407
BstSCI	CCNGG	3 cut(s)	187, 279, 405
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	3 cut(s)	310, 389, 580
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	3 cut(s)	310, 389, 580
Bsu15I	ATCGAT	2 cut(s)	54, 968
BsuRI	GGCC	1 cut(s)	734
BsuTUI	ATCGAT	2 cut(s)	54, 968
BtgZI	GCGATG	1 cut(s)	959
BtsCI	GGATG	3 cut(s)	23, 302, 375
BtsI	GCAGTG	2 cut(s)	505, 582
BtsIMutI	CAGTG	4 cut(s)	204, 505, 582, 717
BveI	ACCTGC	1 cut(s)	856
Cac8I	GCNNGC	3 cut(s)	74, 183, 822
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	4 cut(s)	410, 732, 806, 842
ClaI	ATCGAT	2 cut(s)	54, 968
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	37, 529, 952
CspAI	ACCGGT	1 cut(s)	533
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	3 cut(s)	369, 380, 729
CviQI	GTAC	3 cut(s)	37, 529, 952
DdeI	CTNAG	2 cut(s)	116, 777
DpnI	GATC	5 cut(s)	312, 391, 582, 967, 971
DpnII	GATC	5 cut(s)	310, 389, 580, 965, 969
Eam1104I	CTCTTC	2 cut(s)	321, 737
EarI	CTCTTC	2 cut(s)	321, 737
Eco130I	CCWWGG	2 cut(s)	255, 588
Eco47I	GGWCC	3 cut(s)	410, 806, 842
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	797
EcoO109I	RGGNCCY	2 cut(s)	410, 806
EcoRII	CCWGG	3 cut(s)	187, 279, 405
EcoT14I	CCWWGG	2 cut(s)	255, 588
ErhI	CCWWGG	2 cut(s)	255, 588
FaeI	CATG	3 cut(s)	372, 383, 732
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	368, 379, 728
FauNDI	CATATG	2 cut(s)	105, 333
Fnu4HI	GCNGC	2 cut(s)	420, 763
FokI	GGATG	3 cut(s)	30, 309, 362
Fsp4HI	GCNGC	2 cut(s)	420, 763
FspBI	CTAG	2 cut(s)	398, 852
GluI	GCNGC	2 cut(s)	420, 763
GsaI	CCCAGC	1 cut(s)	669
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	734
HapII	CCGG	2 cut(s)	534, 817
Hin1II	CATG	3 cut(s)	372, 383, 732
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	6 cut(s)	44, 56, 134, 242, 723, 868
HpaII	CCGG	2 cut(s)	534, 817
HphI	GGTGA	4 cut(s)	298, 548, 631, 896
Hpy166II	GTNNAC	3 cut(s)	503, 531, 845
Hpy188I	TCNGA	4 cut(s)	482, 610, 656, 873
Hpy188III	TCNNGA	3 cut(s)	563, 644, 963
Hpy8I	GTNNAC	3 cut(s)	503, 531, 845
HpyAV	CCTTC	8 cut(s)	124, 217, 331, 404, 440, 610, 744, 797
HpyCH4III	ACNGT	2 cut(s)	208, 650
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	3 cut(s)	72, 503, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
HpyF3I	CTNAG	2 cut(s)	116, 777
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	3 cut(s)	372, 383, 732
Kzo9I	GATC	5 cut(s)	310, 389, 580, 965, 969
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	2 cut(s)	398, 852
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	3 cut(s)	259, 644, 901
MalI	GATC	5 cut(s)	312, 391, 582, 967, 971
MboI	GATC	5 cut(s)	310, 389, 580, 965, 969
MboII	GAAGA	5 cut(s)	338, 551, 754, 759, 943
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	3 cut(s)	310, 389, 580
MhlI	GDGCHC	2 cut(s)	505, 643
MluCI	AATT	2 cut(s)	234, 483
MlyI	GAGTC	3 cut(s)	38, 236, 717
MmeI	TCCRAC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	3 cut(s)	108, 378, 944
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	534, 817
MspR9I	CCNGG	3 cut(s)	189, 281, 407
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	4 cut(s)	30, 295, 341, 577
MvaI	CCWGG	3 cut(s)	189, 281, 407
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
NdeI	CATATG	2 cut(s)	105, 333
NdeII	GATC	5 cut(s)	310, 389, 580, 965, 969
NlaIII	CATG	3 cut(s)	372, 383, 732
NlaIV	GGNNCC	3 cut(s)	6, 411, 561
NmuCI	GTSAC	2 cut(s)	644, 901
PaeR7I	CTCGAG	1 cut(s)	797
PaqCI	CACCTGC	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	4 cut(s)	30, 295, 341, 577
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	56, 134, 868
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	421, 764
PleI	GAGTC	3 cut(s)	38, 236, 717
PpsI	GAGTC	3 cut(s)	38, 236, 717
Ppu21I	YACGTR	1 cut(s)	955
PpuMI	RGGWCCY	2 cut(s)	410, 806
Psp5II	RGGWCCY	2 cut(s)	410, 806
Psp6I	CCWGG	3 cut(s)	187, 279, 405
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	3 cut(s)	187, 279, 405
PspN4I	GGNNCC	3 cut(s)	6, 411, 561
PspPI	GGNCC	4 cut(s)	410, 732, 806, 842
PspPPI	RGGWCCY	2 cut(s)	410, 806
PspXI	VCTCGAGB	1 cut(s)	797
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	3 cut(s)	310, 389, 580
RsaI	GTAC	3 cut(s)	38, 530, 953
RsaNI	GTAC	3 cut(s)	37, 529, 952
RseI	CAYNNNNRTG	3 cut(s)	108, 378, 944
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	420, 763
Sau3AI	GATC	5 cut(s)	310, 389, 580, 965, 969
Sau96I	GGNCC	4 cut(s)	410, 732, 806, 842
SchI	GAGTC	3 cut(s)	38, 236, 717
ScrFI	CCNGG	3 cut(s)	189, 281, 407
SduI	GDGCHC	2 cut(s)	505, 643
SexAI	ACCWGGT	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	797
SgrAI	CRCCGGYG	1 cut(s)	533
SinI	GGWCC	3 cut(s)	410, 806, 842
SlaI	CTCGAG	1 cut(s)	797
SmiMI	CAYNNNNRTG	3 cut(s)	108, 378, 944
SmlI	CTYRAG	3 cut(s)	122, 788, 797
SmoI	CTYRAG	3 cut(s)	122, 788, 797
Sse9I	AATT	2 cut(s)	234, 483
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	2 cut(s)	398, 852
StyD4I	CCNGG	3 cut(s)	187, 279, 405
StyI	CCWWGG	2 cut(s)	255, 588
TaaI	ACNGT	2 cut(s)	208, 650
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	3 cut(s)	54, 798, 968
TasI	AATT	2 cut(s)	234, 483
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	765
TfiI	GAWTC	3 cut(s)	56, 134, 868
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	4 cut(s)	211, 512, 582, 717
TseFI	GTSAC	2 cut(s)	644, 901
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	2 cut(s)	644, 901
TspDTI	ATGAA	2 cut(s)	350, 820
TspRI	CASTG	4 cut(s)	211, 512, 582, 717
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	3 cut(s)	410, 806, 842
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XhoI	CTCGAG	1 cut(s)	797
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	2 cut(s)	398, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.