Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007339

Physical Location & Seq

Genomic Coordinates Forward (+)

46700565 .. 46703030

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1348800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATCATATTTCAGCTAAGATGAGAGGAGCGGGTTTGTGGCAACTTGGCCAGTCAATCACCCGGCGTATTGCTCAGGGTGACAAGAAGGCTGTAGCTCGTCGATACTTTGCCTCAGAAGCTGAACTCAAAAAGACAGTCCTCTATGACTTCCACATTGCAAATGGTGGAAAGATGGTGCCTTTCGCTGGATGGGGAATGCCTATTCAGTATAAGGACTCGATCATCGACTCCACTATAAACTGCAGGCAGAATGGTAGTCTCTTTGATGTCTCGCATATGTGTGGGCTGAGCCTTAAGGGGAAGGACTCCATTCCATTCCTTGAAAAGCTTGTCATTGCGGATGTTGCTTCGCTTGCCCCTGGAACGGGGACACTCACTGTCTTTACAAATGAGAAGGGAGGGGCAATTGATGACTCTGTGATTACCAAGGTTACCGATGACCACATATACCTGGTGGTGAATGCTGGATGTAGGGATAAAGATCTTGCTCACATTGAAGAGCATATGAAGGCATTCAAGGCTAAAGGCGGAGATGTCTCATGGCACATCCATGATGAGAGATCTCTTCTAGCTCTCCAGGGTCCTCTTGCTGCCCCAACTCTTCAACACTTGACAAAAGAGGATTTGAGCAAGTTATATTTTGGAGAGTTCCGAATTTTGGATATCAATGGTGCACACTGCTTTCTCACAAGGACTGGTGGCTTCGAAATTGACATTTTGATCGTGTACTTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010035 GO:0010038 GO:0016020 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko00670 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map00670 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

247

Amino Acids

27.15

Weight (kDa)

6.83

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCV_T	PF01571	48 - 234	2.3e-42	GCVT N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11860 AT1G11860 AT1G11860
fragaria_vesca	FvH4_3g01820 FvH4_3g01820 FvH4_3g01820
malus_domestica	MD05G1348800.v1.1 MD10G1323700.v1.1
prunus_persica	Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1
pyrus_communis	pycom05g31640 pycom10g27410
rosa_chinensis	RchiOBHm_Chr5g0002651
rosa_laevigata	RLG00000031050
rosa_multiflora	Rmu_co8214212.1_g000001 Rmu_sc0009084.1_g000015
rosa_roxburghii	Rroxscaffold_1G00073210
rosa_rugosa	Rorug04G0398100 Rorug04G0398200
rosa_samantha	Rh5AG021500 Rh5BG024200 Rh5CG023700 Rh5DG022600
rosa_wichuraiana	Rw5G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	32
AciI	CCGC	3 cut(s)	32, 341, 531
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	657
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	4 cut(s)	188, 367, 368, 661
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	326, 500, 520, 608
AjnI	CCWGG	3 cut(s)	361, 453, 579
AluBI	AGCT	5 cut(s)	17, 98, 122, 331, 575
AluI	AGCT	5 cut(s)	17, 98, 122, 331, 575
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	3 cut(s)	266, 277, 544
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	657
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	52, 92, 472
AsuII	TTCGAA	1 cut(s)	708
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	169, 186
BciT130I	CCWGG	3 cut(s)	363, 455, 581
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	266, 277, 544
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	2 cut(s)	93, 244
BfrI	CTTAAG	1 cut(s)	296
BglII	AGATCT	2 cut(s)	484, 563
BisI	GCNGC	1 cut(s)	594
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	4 cut(s)	64, 363, 455, 581
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	180, 585
BmrFI	CCNGG	4 cut(s)	64, 363, 455, 581
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	361, 429, 580
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 367, 368, 661
Bse1I	ACTGG	2 cut(s)	52, 703
Bse3DI	GCAATG	2 cut(s)	156, 336
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	3 cut(s)	363, 455, 581
BseDI	CCNNGG	3 cut(s)	361, 429, 580
BseGI	GGATG	4 cut(s)	197, 349, 476, 549
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	4 cut(s)	188, 367, 368, 661
BseMI	GCAATG	2 cut(s)	156, 336
BseMII	CTCAG	3 cut(s)	89, 129, 281
BseNI	ACTGG	2 cut(s)	52, 703
BseRI	GAGGAG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	1 cut(s)	580
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	4 cut(s)	188, 367, 368, 661
BsmAI	GTCTC	3 cut(s)	266, 277, 544
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	3 cut(s)	204, 469, 515
BsnI	GGCC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	708
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	5 cut(s)	4, 222, 484, 563, 723
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	3 cut(s)	32, 341, 531
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	3 cut(s)	88, 128, 282
BspLI	GGNNCC	2 cut(s)	180, 585
BspMAI	CTGCAG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	495
BspT104I	TTCGAA	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	178
BspTI	CTTAAG	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	156, 336
BsrI	ACTGG	2 cut(s)	52, 703
BssECI	CCNNGG	3 cut(s)	361, 429, 580
BssMI	GATC	5 cut(s)	4, 222, 484, 563, 723
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	3 cut(s)	363, 455, 581
Bst4CI	ACNGT	2 cut(s)	139, 382
Bst6I	CTCTTC	3 cut(s)	495, 573, 609
BstAFI	CTTAAG	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	708
BstC8I	GCNNGC	2 cut(s)	248, 357
BstDEI	CTNAG	4 cut(s)	18, 75, 115, 290
BstEII	GGTNACC	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	197, 349, 476, 549
BstKTI	GATC	5 cut(s)	7, 225, 487, 566, 726
BstMAI	GTCTC	3 cut(s)	266, 277, 544
BstMBI	GATC	5 cut(s)	4, 222, 484, 563, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 347, 356, 521
BstNI	CCWGG	3 cut(s)	363, 455, 581
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	4 cut(s)	62, 361, 453, 579
BstSFI	CTRYAG	2 cut(s)	93, 244
BstSLI	GKGCMC	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	580
BstX2I	RGATCY	2 cut(s)	484, 563
BstYI	RGATCY	2 cut(s)	484, 563
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	4 cut(s)	197, 349, 476, 549
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	3 cut(s)	378, 679, 736
Cac8I	GCNNGC	2 cut(s)	248, 357
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	584
CsiI	ACCWGGT	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	2 cut(s)	543, 554
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	4 cut(s)	18, 75, 115, 290
DpnI	GATC	5 cut(s)	6, 224, 486, 565, 725
DpnII	GATC	5 cut(s)	4, 222, 484, 563, 723
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	3 cut(s)	495, 573, 609
EarI	CTCTTC	3 cut(s)	495, 573, 609
EciI	GGCGGA	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	584
Eco91I	GGTNACC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	361, 453, 579
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	546, 557
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	542, 553
FauI	CCCGC	1 cut(s)	25
FauNDI	CATATG	2 cut(s)	279, 507
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	4 cut(s)	204, 356, 483, 536
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	2 cut(s)	546, 557
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	218, 230, 308, 416
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	52, 92, 472
Hpy166II	GTNNAC	2 cut(s)	677, 730
Hpy188I	TCNGA	2 cut(s)	118, 656
Hpy8I	GTNNAC	2 cut(s)	677, 730
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	4 cut(s)	82, 298, 391, 505
HpyCH4III	ACNGT	2 cut(s)	139, 382
HpyCH4V	TGCA	3 cut(s)	161, 246, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 347, 356, 521
HpyF3I	CTNAG	4 cut(s)	18, 75, 115, 290
Hsp92II	CATG	2 cut(s)	546, 557
Kzo9I	GATC	5 cut(s)	4, 222, 484, 563, 723
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	580
MabI	ACCWGGT	1 cut(s)	453
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	80, 433
MalI	GATC	5 cut(s)	6, 224, 486, 565, 725
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	5 cut(s)	4, 222, 484, 563, 723
MboII	GAAGA	3 cut(s)	512, 560, 596
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	484, 563
MhlI	GDGCHC	1 cut(s)	679
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	408, 657, 711
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	4 cut(s)	212, 224, 302, 410
MnlI	CCTC	6 cut(s)	20, 124, 152, 395, 597, 616
Mox20I	TGGCCA	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	2 cut(s)	282, 552
Msp20I	TGGCCA	1 cut(s)	51
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	4 cut(s)	64, 363, 455, 581
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	3 cut(s)	204, 469, 515
MvaI	CCWGG	3 cut(s)	363, 455, 581
MwoI	GCNNNNNNNGC	4 cut(s)	119, 347, 356, 521
NciI	CCSGG	1 cut(s)	64
NdeI	CATATG	2 cut(s)	279, 507
NdeII	GATC	5 cut(s)	4, 222, 484, 563, 723
NlaIII	CATG	2 cut(s)	546, 557
NlaIV	GGNNCC	2 cut(s)	180, 585
NmuCI	GTSAC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	495
PctI	GAATGC	3 cut(s)	204, 469, 515
PdmI	GAANNNNTTC	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	4 cut(s)	212, 224, 302, 410
PpsI	GAGTC	4 cut(s)	212, 224, 302, 410
PpuMI	RGGWCCY	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	3 cut(s)	361, 453, 579
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	3 cut(s)	361, 453, 579
PspN4I	GGNNCC	2 cut(s)	180, 585
PspPI	GGNCC	1 cut(s)	584
PspPPI	RGGWCCY	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	484, 563
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	2 cut(s)	282, 552
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	5 cut(s)	4, 222, 484, 563, 723
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	4 cut(s)	212, 224, 302, 410
ScrFI	CCNGG	4 cut(s)	64, 363, 455, 581
SduI	GDGCHC	1 cut(s)	679
SetI	ASST	7 cut(s)	19, 100, 124, 333, 435, 456, 577
SexAI	ACCWGGT	1 cut(s)	453
SfcI	CTRYAG	2 cut(s)	93, 244
SfuI	TTCGAA	1 cut(s)	708
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	282, 552
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	408, 657, 711
SsiI	CCGC	3 cut(s)	32, 341, 531
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	62, 361, 453, 579
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	139, 382
TaqI	TCGA	4 cut(s)	103, 221, 228, 708
TasI	AATT	3 cut(s)	408, 657, 711
TatI	WGTACW	1 cut(s)	729
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	2 cut(s)	385, 686
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	524
TspRI	CASTG	2 cut(s)	385, 686
Vha464I	CTTAAG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.