Rroxscaffold_1G00073210

The glycine cleavage system catalyzes the degradation of glycine

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
94162682 .. 94164579
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00073210.1

Sequence Viewer

Length: 1410 bp
ATGAGAGGAGGTGGTTTGTGGCAGCTTGGTCAGTCAATCACTCGACGCCTTGCTCAGGGTGATAAGAAGGGTGTAGCTCGTCGATACTTTGCCTCTGAAGCTGAGCTCAAAAAGACAGTTCTTTATGACTTCCACGTCGCTCATGGTGGGAAGATGGTGCCATTTGCCGGATGGGGCATGCCTATTCAGTATAAGGATTCAATTATGGACTCCACTGTGAACTGTAGGGAGAACGGTGGGCTTTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAGGGGAAGGACTCCATTCCATTCCTGGAAAAGCTCGTCATAGCTGATGTTGCTGGTCTGGCCCCAGGAACGGGGACACTAACTGTCTTTACAAATGAGAAGGGAGGGGCAATTGATGACTCTGTGGTTACCAAGGTCACTGATGACCACATATACCTGGTGGTGAATGCTGGATGTAGGGATAAGGATTTGGCTCACATTGAGGAGCACATGAAGGCATTCAAGGCCAAAGGGGGAGACGTCTCATGGCACATCCATGATGAGAGATCTCTTCTAGCTCTTCAGGTGAATCCTTTGATTTCACATGCTGTCATAATGCATTACACTATCTTATTATTTCCTTGCAATAAATGTCAGTATCTTTATGCCGGGTCCTCTTGCTGCCCCAACTCTTCAACACTTGACAAAAGAGGATTTGAGCAAGATTTATTTCGGAGAGTTCCGAATTTTGGATATCAATGGGGCACACTGCTTTCTCACAAGGACTGGTTCACATTGTTTGGTTCCCCTTTCCAATTGGCATTTCTGCTCTCTTATGGAGTTATTCGTGAAGGATATTTGATTACCTTTTTGACTGAGAATTTTAGATACACTGGTGAAGATGGATTCGAAATCTCAGTTCCTGATGAGAATGCGTTGGATCTTGCCAAAGCAATCTTGGAGAAATCTGAGGGGAAGGTGAGGCTGACTGGATTGGGAGCTCGTGATAGTCTCCGACTGGAAGCTGGTTTGTGTTTATATGGCAATGATATGGAGCAACACATAACACCAGTGGAGGCTGGGCTCACATGGGCTATAGGCAAGAGAAGAAGGGTAGAAGGTGGCTTTCTCGGAGCTGAGACAATTCTCAAGCAACTTGCTGATGGTCCTTCCATCAGGCGTGTTGGTTTCATCTCTTCAGGCCCACCCGCTAGAGGCCACAGCGAGATTCAGAATGAGAAAGGCGAAACCATTGGGGAAGTGACAAGTGGAGGATTCAGCCCTTGCCTGAAGAAAAATATCGCTATGGGGTATGTAAAATCTGGAAACCACAAGGCCGGAACCAAAGTGAAGATTGTTGTGCGAGGAAAGGCCTATGATGGAACTGTCACTAAAATGCCTTTTGTACCAACAAAATACTACAAGCCAACATAA

Protein Analysis

469

Amino Acids

51.53

Weight (kDa)

8.76

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCV_T PF01571 41 - 174 2.5e-32 GCVT N-terminal domain
GCV_T PF01571 288 - 360 3.5e-21 GCVT N-terminal domain
GCV_T_C PF08669 385 - 461 1.2e-19 Glycine cleavage T-protein C-terminal barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AatII GACGTC 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 157
AciI CCGC 1 cut(s) 1185
AclWI GGATC 1 cut(s) 924
AcsI RAATTY 2 cut(s) 721, 856
AcuI CTGAAG 4 cut(s) 117, 542, 1158, 1286
AcyI GRCGYC 2 cut(s) 46, 516
AfaI GTAC 1 cut(s) 1383
AfiI CCNNNNNNNGG 6 cut(s) 55, 167, 346, 347, 725, 1190
AgsI TTSAA 3 cut(s) 201, 499, 672
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 3 cut(s) 300, 340, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
Alw21I GWGCWC 3 cut(s) 108, 486, 979
Alw26I GTCTC 5 cut(s) 256, 507, 523, 992, 1109
AlwI GGATC 1 cut(s) 924
AlwNI CAGNNNCTG 1 cut(s) 899
AoxI GGCC 6 cut(s) 336, 501, 1177, 1192, 1311, 1347
ApeKI GCWGC 2 cut(s) 22, 657
ApoI RAATTY 2 cut(s) 721, 856
Asp700I GAANNNNTTC 1 cut(s) 494
AspS9I GGNCC 4 cut(s) 337, 648, 1142, 1178
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 5 cut(s) 71, 451, 574, 884, 967
AsuII TTCGAA 1 cut(s) 885
AvaII GGWCC 2 cut(s) 648, 1142
BaeGI GKGCMC 1 cut(s) 743
BaeI ACNNNNGTAYC 2 cut(s) 856, 889
BanI GGYRCC 1 cut(s) 157
BanII GRGCYC 3 cut(s) 108, 979, 1062
BauI CACGAG 1 cut(s) 978
Bbv12I GWGCWC 3 cut(s) 108, 486, 979
BbvI GCAGC 2 cut(s) 34, 644
BccI CCATC 6 cut(s) 148, 165, 872, 1133, 1157, 1349
BciT130I CCWGG 3 cut(s) 302, 342, 434
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 5 cut(s) 256, 507, 523, 992, 1109
BfaI CTAG 2 cut(s) 551, 1188
BfmI CTRYAG 2 cut(s) 223, 1071
BglII AGATCT 1 cut(s) 542
BisI GCNGC 2 cut(s) 23, 658
BlpI GCTNAGC 2 cut(s) 102, 269
BlsI GCNGC 2 cut(s) 24, 659
Bme1390I CCNGG 4 cut(s) 302, 342, 434, 646
Bme18I GGWCC 2 cut(s) 648, 1142
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 4 cut(s) 337, 648, 1142, 1178
BmiI GGNNCC 5 cut(s) 159, 339, 649, 781, 1318
BmrFI CCNGG 4 cut(s) 302, 342, 434, 646
Bpu10I CCTNAGC 1 cut(s) 54
Bpu1102I GCTNAGC 2 cut(s) 102, 269
Bpu14I TTCGAA 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 260, 1109
BpuMI CCSGG 1 cut(s) 646
BsaHI GRCGYC 2 cut(s) 46, 516
BsaJI CCNNGG 2 cut(s) 340, 408
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 167, 346, 347, 725, 1190
Bse1I ACTGG 5 cut(s) 767, 874, 970, 999, 1046
Bse3DI GCAATG 1 cut(s) 1027
BseBI CCWGG 3 cut(s) 302, 342, 434
BseDI CCNNGG 2 cut(s) 340, 408
BseGI GGATG 3 cut(s) 176, 455, 528
BseLI CCNNNNNNNGG 6 cut(s) 55, 167, 346, 347, 725, 1190
BseMI GCAATG 1 cut(s) 1027
BseMII CTCAG 7 cut(s) 68, 93, 260, 843, 906, 936, 1104
BseNI ACTGG 5 cut(s) 767, 874, 970, 999, 1046
BseRI GAGGAG 2 cut(s) 21, 494
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 2 cut(s) 34, 644
BseYI CCCAGC 1 cut(s) 1055
BshFI GGCC 6 cut(s) 338, 503, 1179, 1194, 1313, 1349
BshNI GGYRCC 1 cut(s) 157
BsiHKAI GWGCWC 3 cut(s) 108, 486, 979
BsiSI CCGG 3 cut(s) 168, 645, 1314
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 6 cut(s) 55, 167, 346, 347, 725, 1190
BsmAI GTCTC 5 cut(s) 256, 507, 523, 992, 1109
BsmBI CGTCTC 2 cut(s) 507, 523
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 3 cut(s) 448, 494, 913
BsnI GGCC 6 cut(s) 338, 503, 1179, 1194, 1313, 1349
Bsp119I TTCGAA 1 cut(s) 885
Bsp1286I GDGCHC 5 cut(s) 108, 486, 743, 979, 1062
Bsp143I GATC 2 cut(s) 542, 916
Bsp1720I GCTNAGC 2 cut(s) 102, 269
BspACI CCGC 1 cut(s) 1185
BspANI GGCC 6 cut(s) 338, 503, 1179, 1194, 1313, 1349
BspCNI CTCAG 7 cut(s) 67, 94, 261, 844, 905, 937, 1105
BspLI GGNNCC 5 cut(s) 159, 339, 649, 781, 1318
BspPI GGATC 1 cut(s) 924
BspQI GCTCTTC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 885
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 1027
BsrI ACTGG 5 cut(s) 767, 874, 970, 999, 1046
BssECI CCNNGG 2 cut(s) 340, 408
BssMI GATC 2 cut(s) 542, 916
BssNI GRCGYC 2 cut(s) 46, 516
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 3 cut(s) 302, 342, 434
Bst4CI ACNGT 6 cut(s) 118, 217, 224, 236, 361, 1363
Bst6I CTCTTC 4 cut(s) 552, 561, 673, 1177
BstACI GRCGYC 2 cut(s) 46, 516
BstBI TTCGAA 1 cut(s) 885
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 7 cut(s) 54, 102, 269, 852, 892, 945, 1113
BstEII GGTNACC 1 cut(s) 403
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 176, 455, 528
BstKTI GATC 2 cut(s) 545, 919
BstMAI GTCTC 5 cut(s) 256, 507, 523, 992, 1109
BstMBI GATC 2 cut(s) 542, 916
BstMWI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
BstNI CCWGG 3 cut(s) 302, 342, 434
BstNSI RCATGY 2 cut(s) 181, 584
BstPI GGTNACC 1 cut(s) 403
BstSCI CCNGG 4 cut(s) 300, 340, 432, 644
BstSFI CTRYAG 2 cut(s) 223, 1071
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 2 cut(s) 34, 644
BstX2I RGATCY 2 cut(s) 542, 916
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 542, 916
BsuRI GGCC 6 cut(s) 338, 503, 1179, 1194, 1313, 1349
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 176, 455, 528
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 5 cut(s) 213, 414, 743, 867, 1053
Cac8I GCNNGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 899
Cfr13I GGNCC 4 cut(s) 337, 648, 1142, 1178
CseI GACGC 1 cut(s) 54
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 1 cut(s) 1382
CviAII CATG 7 cut(s) 143, 178, 487, 522, 533, 581, 1065
CviQI GTAC 1 cut(s) 1382
DdeI CTNAG 7 cut(s) 54, 102, 269, 852, 892, 945, 1113
DpnI GATC 2 cut(s) 544, 918
DpnII GATC 2 cut(s) 542, 916
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 4 cut(s) 552, 561, 673, 1177
EarI CTCTTC 4 cut(s) 552, 561, 673, 1177
Ecl136II GAGCTC 2 cut(s) 106, 977
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 1349
Eco24I GRGCYC 3 cut(s) 108, 979, 1062
Eco32I GATATC 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 648, 1142
Eco53kI GAGCTC 2 cut(s) 106, 977
Eco57I CTGAAG 4 cut(s) 117, 542, 1158, 1286
Eco91I GGTNACC 1 cut(s) 403
EcoICRI GAGCTC 2 cut(s) 106, 977
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 648
EcoO65I GGTNACC 1 cut(s) 403
EcoRII CCWGG 3 cut(s) 300, 340, 432
EcoRV GATATC 1 cut(s) 731
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 1 cut(s) 597
EcoT38I GRGCYC 3 cut(s) 108, 979, 1062
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 507, 523
FaeI CATG 7 cut(s) 146, 181, 490, 525, 536, 584, 1068
FaqI GGGAC 1 cut(s) 364
FatI CATG 7 cut(s) 142, 177, 486, 521, 532, 580, 1064
FauI CCCGC 1 cut(s) 1192
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 23, 658
FokI GGATG 3 cut(s) 183, 462, 515
FriOI GRGCYC 3 cut(s) 108, 979, 1062
Fsp4HI GCNGC 2 cut(s) 23, 658
FspBI CTAG 2 cut(s) 551, 1188
GluI GCNGC 2 cut(s) 23, 658
GsaI CCCAGC 1 cut(s) 1059
HaeIII GGCC 6 cut(s) 338, 503, 1179, 1194, 1313, 1349
HapII CCGG 3 cut(s) 168, 645, 1314
HgaI GACGC 1 cut(s) 54
Hin1I GRCGYC 2 cut(s) 46, 516
Hin1II CATG 7 cut(s) 146, 181, 490, 525, 536, 584, 1068
HinfI GANTC 8 cut(s) 197, 209, 287, 395, 565, 882, 1204, 1251
HpaII CCGG 3 cut(s) 168, 645, 1314
HphI GGTGA 5 cut(s) 71, 451, 574, 884, 967
Hpy166II GTNNAC 2 cut(s) 220, 768
Hpy188I TCNGA 7 cut(s) 97, 711, 720, 946, 992, 1109, 1209
Hpy188III TCNNGA 4 cut(s) 824, 899, 980, 1299
Hpy8I GTNNAC 2 cut(s) 220, 768
Hpy99I CGWCG 3 cut(s) 48, 84, 140
HpyAV CCTTC 9 cut(s) 61, 277, 370, 484, 821, 946, 1080, 1088, 1155
HpyCH4III ACNGT 6 cut(s) 118, 217, 224, 236, 361, 1363
HpyCH4IV ACGT 2 cut(s) 135, 516
HpyCH4V TGCA 2 cut(s) 595, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
HpyF3I CTNAG 7 cut(s) 54, 102, 269, 852, 892, 945, 1113
HpySE526I ACGT 2 cut(s) 135, 516
Hsp92I GRCGYC 2 cut(s) 46, 516
Hsp92II CATG 7 cut(s) 146, 181, 490, 525, 536, 584, 1068
Kzo9I GATC 2 cut(s) 542, 916
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 4 cut(s) 481, 974, 1030, 1109
Lsp1109I GCAGC 2 cut(s) 34, 644
MabI ACCWGGT 1 cut(s) 432
MaeI CTAG 2 cut(s) 551, 1188
MaeII ACGT 2 cut(s) 135, 516
MaeIII GTNAC 4 cut(s) 403, 412, 1237, 1363
MalI GATC 2 cut(s) 544, 918
MboI GATC 2 cut(s) 542, 916
MboII GAAGA 9 cut(s) 163, 539, 548, 660, 887, 1095, 1164, 1279, 1339
MfeI CAATTG 2 cut(s) 387, 791
MflI RGATCY 2 cut(s) 542, 916
MhlI GDGCHC 5 cut(s) 108, 486, 743, 979, 1062
MluCI AATT 6 cut(s) 201, 387, 721, 791, 856, 1119
MlyI GAGTC 3 cut(s) 203, 281, 389
MmeI TCCRAC 2 cut(s) 894, 1015
Mph1103I ATGCAT 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 494
MslI CAYNNNNRTG 3 cut(s) 261, 531, 1370
MspI CCGG 3 cut(s) 168, 645, 1314
MspR9I CCNGG 4 cut(s) 302, 342, 434, 646
MunI CAATTG 2 cut(s) 387, 791
Mva1269I GAATGC 3 cut(s) 448, 494, 913
MvaI CCWGG 3 cut(s) 302, 342, 434
MwoI GCNNNNNNNGC 4 cut(s) 98, 326, 335, 500
NciI CCSGG 1 cut(s) 646
NdeI CATATG 1 cut(s) 258
NdeII GATC 2 cut(s) 542, 916
NlaIII CATG 7 cut(s) 146, 181, 490, 525, 536, 584, 1068
NlaIV GGNNCC 5 cut(s) 159, 339, 649, 781, 1318
NmuCI GTSAC 3 cut(s) 412, 1237, 1363
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 2 cut(s) 181, 584
NspV TTCGAA 1 cut(s) 885
PaeI GCATGC 1 cut(s) 181
PceI AGGCCT 1 cut(s) 1349
PciSI GCTCTTC 1 cut(s) 561
PctI GAATGC 3 cut(s) 448, 494, 913
PdmI GAANNNNTTC 1 cut(s) 494
PfeI GAWTC 5 cut(s) 197, 565, 882, 1204, 1251
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 2 cut(s) 24, 659
PleI GAGTC 3 cut(s) 203, 281, 389
PpsI GAGTC 3 cut(s) 203, 281, 389
PpuMI RGGWCCY 1 cut(s) 648
Psp124BI GAGCTC 2 cut(s) 108, 979
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 300, 340, 432
PspEI GGTNACC 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 3 cut(s) 300, 340, 432
PspN4I GGNNCC 5 cut(s) 159, 339, 649, 781, 1318
PspPI GGNCC 4 cut(s) 337, 648, 1142, 1178
PspPPI RGGWCCY 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 2 cut(s) 542, 916
RsaI GTAC 1 cut(s) 1383
RsaNI GTAC 1 cut(s) 1382
RseI CAYNNNNRTG 3 cut(s) 261, 531, 1370
SacI GAGCTC 2 cut(s) 108, 979
SapI GCTCTTC 1 cut(s) 561
SatI GCNGC 2 cut(s) 23, 658
Sau3AI GATC 2 cut(s) 542, 916
Sau96I GGNCC 4 cut(s) 337, 648, 1142, 1178
SchI GAGTC 3 cut(s) 203, 281, 389
ScrFI CCNGG 4 cut(s) 302, 342, 434, 646
SduI GDGCHC 5 cut(s) 108, 486, 743, 979, 1062
SexAI ACCWGGT 1 cut(s) 432
SfcI CTRYAG 2 cut(s) 223, 1071
SfuI TTCGAA 1 cut(s) 885
SinI GGWCC 2 cut(s) 648, 1142
SmiMI CAYNNNNRTG 3 cut(s) 261, 531, 1370
SmlI CTYRAG 2 cut(s) 275, 1124
SmoI CTYRAG 2 cut(s) 275, 1124
SphI GCATGC 1 cut(s) 181
Sse9I AATT 6 cut(s) 201, 387, 721, 791, 856, 1119
SseBI AGGCCT 1 cut(s) 1349
SsiI CCGC 1 cut(s) 1185
SspMI CTAG 2 cut(s) 551, 1188
SstI GAGCTC 2 cut(s) 108, 979
StuI AGGCCT 1 cut(s) 1349
StyD4I CCNGG 4 cut(s) 300, 340, 432, 644
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 6 cut(s) 118, 217, 224, 236, 361, 1363
TaiI ACGT 2 cut(s) 138, 519
TaqI TCGA 3 cut(s) 43, 82, 885
TasI AATT 6 cut(s) 201, 387, 721, 791, 856, 1119
TfiI GAWTC 5 cut(s) 197, 565, 882, 1204, 1251
TscAI CASTG 5 cut(s) 220, 421, 750, 874, 1053
TseFI GTSAC 3 cut(s) 412, 1237, 1363
TseI GCWGC 2 cut(s) 22, 657
Tsp45I GTSAC 3 cut(s) 412, 1237, 1363
TspDTI ATGAA 2 cut(s) 503, 1156
TspRI CASTG 5 cut(s) 220, 421, 750, 874, 1053
VpaK11BI GGWCC 2 cut(s) 648, 1142
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 2 cut(s) 721, 856
XceI RCATGY 2 cut(s) 181, 584
XcmI CCANNNNNNNNNTGG 4 cut(s) 140, 168, 298, 931
XmnI GAANNNNTTC 1 cut(s) 494
XspI CTAG 2 cut(s) 551, 1188
ZraI GACGTC 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.