Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007339

Physical Location & Seq

Genomic Coordinates Forward (+)

31309601 .. 31311063

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGCCTTTCGCTGGATGGGGAATGCCTATTCAGTATAAGGACTCGATCATCGACTCCACTATAAACTGCAGGCAGAATGGTAGTCTGTTTGATGTCTCGCATATGTGTGGGCTTAGCCTTAAGGGGAAGGACTCCATTCCATTCCTTGAAAAGCTTGTCATTGCGGATGTTGCTTCGCTTGCCCCTGGAACGGGGACACTCACTGTCTTTACAAACGAGAAGGGAGGGGCAATTGATGACTCTGTGATTACCAAGGTTACCGATGACCACATATACCTGGTGGTGAATGCTGGATGTAGGGATAAAGATCTTGCTCACATTGAAGAGCATATGAAGGCATTCAAGGCTAAAGGCGGAGATGTCTCATGGCACATCCATGATGAGAGATCTCTTCTAGCTCTCCAGGGTCCTCTTGCTGCCCCAACTCTTCAACACTTGACAAAAGAGGATTTGAGCAAGTTATATTTTGGAGAGTTCCGAATTTTGGATATCAATGGTGCACACTGCTTTCTCACAAGGACTGGGTACACCGGTGAAGATGGATTTGAAATCTCGGTTCCTGATGAGAATGCAGTAGATCGATCTTGCCAAAGCAATCTTGGAGAAATCCGAGGGGAAGGTGAGGCTGACAGGTCTGGGTGCTCGCGACAGTCTCCGACTGGAAGCTGGGTTGTGTTTATACGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010035 GO:0010038 GO:0016020 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko00670 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map00670 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

231

Amino Acids

25.1

Weight (kDa)

5.21

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11860 AT1G11860 AT1G11860
fragaria_vesca	FvH4_3g01820 FvH4_3g01820 FvH4_3g01820
malus_domestica	MD05G1348800.v1.1 MD10G1323700.v1.1
prunus_persica	Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1
pyrus_communis	pycom05g31640 pycom10g27410
rosa_chinensis	RchiOBHm_Chr5g0002651
rosa_laevigata	RLG00000031050
rosa_multiflora	Rmu_co8214212.1_g000001 Rmu_sc0009084.1_g000015
rosa_roxburghii	Rroxscaffold_1G00073210
rosa_rugosa	Rorug04G0398100 Rorug04G0398200
rosa_samantha	Rh5AG021500 Rh5BG024200 Rh5CG023700 Rh5DG022600
rosa_wichuraiana	Rw5G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	649
AciI	CCGC	2 cut(s)	167, 357
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
AflII	CTTAAG	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	152, 326, 346, 434, 551
AjnI	CCWGG	3 cut(s)	187, 279, 405
AluBI	AGCT	3 cut(s)	157, 401, 669
AluI	AGCT	3 cut(s)	157, 401, 669
Alw21I	GWGCWC	2 cut(s)	505, 647
Alw26I	GTCTC	3 cut(s)	103, 370, 660
Alw44I	GTGCAC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	483
AsiGI	ACCGGT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	298, 548, 635
AvaII	GGWCC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	505, 647
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	12, 536
BciT130I	CCWGG	3 cut(s)	189, 281, 407
BcoDI	GTCTC	3 cut(s)	103, 370, 660
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	70
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	2 cut(s)	310, 389
BisI	GCNGC	1 cut(s)	420
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	189, 281, 407
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	3 cut(s)	6, 411, 561
BmrFI	CCNGG	3 cut(s)	189, 281, 407
BmrI	ACTGGG	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	583
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	4 cut(s)	187, 255, 406, 613
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
Bse118I	RCCGGY	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	529, 667
Bse3DI	GCAATG	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	3 cut(s)	189, 281, 407
BseCI	ATCGAT	1 cut(s)	583
BseDI	CCNNGG	4 cut(s)	187, 255, 406, 613
BseGI	GGATG	4 cut(s)	23, 175, 302, 375
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
BseMI	GCAATG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	529, 667
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	669
Bsh1236I	CGCG	1 cut(s)	649
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	533
BshVI	ATCGAT	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	505, 647
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	14, 193, 194, 487
BsmAI	GTCTC	3 cut(s)	103, 370, 660
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	4 cut(s)	30, 295, 341, 577
Bsp1286I	GDGCHC	2 cut(s)	505, 647
Bsp143I	GATC	5 cut(s)	48, 310, 389, 580, 584
Bsp1720I	GCTNAGC	1 cut(s)	116
Bsp68I	TCGCGA	1 cut(s)	649
BspACI	CCGC	2 cut(s)	167, 357
BspDI	ATCGAT	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	6, 411, 561
BspMAI	CTGCAG	1 cut(s)	74
BspQI	GCTCTTC	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	529, 667
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	4 cut(s)	187, 255, 406, 613
BssMI	GATC	5 cut(s)	48, 310, 389, 580, 584
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	3 cut(s)	189, 281, 407
Bst4CI	ACNGT	2 cut(s)	208, 654
Bst6I	CTCTTC	3 cut(s)	321, 399, 435
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	74, 183, 647
BstDEI	CTNAG	1 cut(s)	116
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	23, 175, 302, 375
BstFNI	CGCG	1 cut(s)	649
BstKTI	GATC	5 cut(s)	51, 313, 392, 583, 587
BstMAI	GTCTC	3 cut(s)	103, 370, 660
BstMBI	GATC	5 cut(s)	48, 310, 389, 580, 584
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
BstNI	CCWGG	3 cut(s)	189, 281, 407
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	187, 279, 405
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	2 cut(s)	310, 389
BstYI	RGATCY	2 cut(s)	310, 389
Bsu15I	ATCGAT	1 cut(s)	583
BsuTUI	ATCGAT	1 cut(s)	583
BtsCI	GGATG	4 cut(s)	23, 175, 302, 375
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	204, 505
BtuMI	TCGCGA	1 cut(s)	649
Cac8I	GCNNGC	3 cut(s)	74, 183, 647
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	583
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	529
CspAI	ACCGGT	1 cut(s)	533
CviAII	CATG	2 cut(s)	369, 380
CviJI	RGCY	7 cut(s)	115, 120, 157, 350, 401, 629, 669
CviKI_1	RGCY	7 cut(s)	115, 120, 157, 350, 401, 629, 669
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	5 cut(s)	50, 312, 391, 582, 586
DpnII	GATC	5 cut(s)	48, 310, 389, 580, 584
Eam1104I	CTCTTC	3 cut(s)	321, 399, 435
EarI	CTCTTC	3 cut(s)	321, 399, 435
EciI	GGCGGA	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	410
Eco91I	GGTNACC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	410
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	187, 279, 405
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	2 cut(s)	372, 383
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	368, 379
FauNDI	CATATG	2 cut(s)	105, 333
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	4 cut(s)	30, 182, 309, 362
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	389
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	2 cut(s)	372, 383
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	44, 56, 134, 242
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	3 cut(s)	298, 548, 635
Hpy166II	GTNNAC	2 cut(s)	503, 531
Hpy188I	TCNGA	3 cut(s)	482, 614, 660
Hpy188III	TCNNGA	2 cut(s)	563, 648
Hpy8I	GTNNAC	2 cut(s)	503, 531
HpyAV	CCTTC	4 cut(s)	124, 217, 331, 614
HpyCH4III	ACNGT	2 cut(s)	208, 654
HpyCH4V	TGCA	3 cut(s)	72, 503, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	372, 383
Kzo9I	GATC	5 cut(s)	48, 310, 389, 580, 584
LguI	GCTCTTC	1 cut(s)	321
Lsp1109I	GCAGC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	5 cut(s)	50, 312, 391, 582, 586
MboI	GATC	5 cut(s)	48, 310, 389, 580, 584
MboII	GAAGA	4 cut(s)	338, 386, 422, 551
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	2 cut(s)	310, 389
MhlI	GDGCHC	2 cut(s)	505, 647
MluCI	AATT	2 cut(s)	234, 483
MlyI	GAGTC	4 cut(s)	38, 50, 128, 236
MmeI	TCCRAC	1 cut(s)	683
MnlI	CCTC	5 cut(s)	221, 423, 442, 608, 619
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	108, 378
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	3 cut(s)	189, 281, 407
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	4 cut(s)	30, 295, 341, 577
MvaI	CCWGG	3 cut(s)	189, 281, 407
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 347
NdeI	CATATG	2 cut(s)	105, 333
NdeII	GATC	5 cut(s)	48, 310, 389, 580, 584
NlaIII	CATG	2 cut(s)	372, 383
NlaIV	GGNNCC	3 cut(s)	6, 411, 561
NruI	TCGCGA	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	4 cut(s)	30, 295, 341, 577
PdmI	GAANNNNTTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	4 cut(s)	38, 50, 128, 236
PpsI	GAGTC	4 cut(s)	38, 50, 128, 236
PpuMI	RGGWCCY	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	3 cut(s)	187, 279, 405
PspEI	GGTNACC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	3 cut(s)	187, 279, 405
PspN4I	GGNNCC	3 cut(s)	6, 411, 561
PspPI	GGNCC	1 cut(s)	410
PspPPI	RGGWCCY	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	310, 389
RruI	TCGCGA	1 cut(s)	649
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	2 cut(s)	108, 378
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	5 cut(s)	48, 310, 389, 580, 584
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	4 cut(s)	38, 50, 128, 236
ScrFI	CCNGG	3 cut(s)	189, 281, 407
SduI	GDGCHC	2 cut(s)	505, 647
SetI	ASST	7 cut(s)	159, 261, 282, 403, 625, 638, 671
SexAI	ACCWGGT	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	108, 378
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	234, 483
SsiI	CCGC	2 cut(s)	167, 357
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	187, 279, 405
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	208, 654
TaqI	TCGA	3 cut(s)	47, 54, 583
TasI	AATT	2 cut(s)	234, 483
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	211, 512
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	211, 512
Vha464I	CTTAAG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.