Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8214212.1

Orthogroup ID

OG0007339

Physical Location & Seq

Genomic Coordinates Forward (+)

18 .. 695

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8214212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgagaggaggtggtttgtggcagcttggtcagtcaatcacccgacgccttgctcagggtgataagaagggtgtagctcgtcgatactttgcctctgaagctgagctcaaaaagacagttctttatgacttccacgtcgctcatggtgggaagatggtgccatttgccggatggggcatgcctattcagtataaggactcaattatggactccactgtgaactgtagggagaacggtgggctttttgatgtctcccatatgtgtgggctgagcctcaaggggaaggactccattccattcctggaaaagctcgtcatagctgatgttgctggtctggcccccggaacggggacactaactgtctttacaaatgagaagggaggggcaattgatgactctgtggttaccaaggtcactgatgaccacatatacctggtggtgaatgctggatgtagggataaggatttggctcacattgaggagcacatgaaggcattcaaggccaaagggggagacgtctcatggcacatccatgatgagagatctcttctagctcttcaggtgaatcctttgatttcacataccgtcataatccattacagtatcttattatttccttgcaataaatgtcagtatctttatgccggtatgctgagatgtatgattgtagttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0010035 GO:0010038 GO:0016020 GO:0022626 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko00670 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map00670 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GCV_T GCV_T_C

Protein Analysis

225

Amino Acids

24.75

Weight (kDa)

8.18

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11860 AT1G11860 AT1G11860
fragaria_vesca	FvH4_3g01820 FvH4_3g01820 FvH4_3g01820
malus_domestica	MD05G1348800.v1.1 MD10G1323700.v1.1
prunus_persica	Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1 Prupe.4G018500_v2.0.a1
pyrus_communis	pycom05g31640 pycom10g27410
rosa_chinensis	RchiOBHm_Chr5g0002651
rosa_laevigata	RLG00000031050
rosa_multiflora	Rmu_co8214212.1_g000001 Rmu_sc0009084.1_g000015
rosa_roxburghii	Rroxscaffold_1G00073210
rosa_rugosa	Rorug04G0398100 Rorug04G0398200
rosa_samantha	Rh5AG021500 Rh5BG024200 Rh5CG023700 Rh5DG022600
rosa_wichuraiana	Rw5G001990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AatII	GACGTC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	117, 542
AcyI	GRCGYC	2 cut(s)	46, 516
AfiI	CCNNNNNNNGG	5 cut(s)	55, 167, 346, 347, 348
AgsI	TTSAA	1 cut(s)	499
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	300, 432
AluBI	AGCT	7 cut(s)	25, 77, 101, 106, 310, 320, 554
AluI	AGCT	7 cut(s)	25, 77, 101, 106, 310, 320, 554
Alw21I	GWGCWC	2 cut(s)	108, 486
Alw26I	GTCTC	3 cut(s)	256, 507, 523
AoxI	GGCC	2 cut(s)	336, 501
ApeKI	GCWGC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	4 cut(s)	31, 71, 451, 574
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	108, 486
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	148, 165
BciT130I	CCWGG	2 cut(s)	302, 434
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	3 cut(s)	256, 507, 523
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	1 cut(s)	23
BlpI	GCTNAGC	2 cut(s)	102, 269
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	302, 342, 434
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	159, 339
BmrFI	CCNGG	3 cut(s)	302, 342, 434
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	2 cut(s)	102, 269
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	342
BsaHI	GRCGYC	2 cut(s)	46, 516
BsaJI	CCNNGG	2 cut(s)	340, 408
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 167, 346, 347, 348
Bse118I	RCCGGY	1 cut(s)	644
BseBI	CCWGG	2 cut(s)	302, 434
BseDI	CCNNGG	2 cut(s)	340, 408
BseGI	GGATG	3 cut(s)	176, 455, 528
BseLI	CCNNNNNNNGG	5 cut(s)	55, 167, 346, 347, 348
BseMII	CTCAG	4 cut(s)	68, 93, 260, 644
BseRI	GAGGAG	2 cut(s)	21, 494
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	2 cut(s)	338, 503
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	108, 486
BsiSI	CCGG	3 cut(s)	168, 342, 645
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	5 cut(s)	55, 167, 346, 347, 348
BsmAI	GTCTC	3 cut(s)	256, 507, 523
BsmBI	CGTCTC	2 cut(s)	507, 523
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	2 cut(s)	448, 494
BsnI	GGCC	2 cut(s)	338, 503
Bsp1286I	GDGCHC	2 cut(s)	108, 486
Bsp143I	GATC	1 cut(s)	542
Bsp1720I	GCTNAGC	2 cut(s)	102, 269
BspANI	GGCC	2 cut(s)	338, 503
BspCNI	CTCAG	4 cut(s)	67, 94, 261, 645
BspLI	GGNNCC	2 cut(s)	159, 339
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	340, 408
BssMI	GATC	1 cut(s)	542
BssNI	GRCGYC	2 cut(s)	46, 516
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	302, 434
Bst4CI	ACNGT	7 cut(s)	118, 217, 224, 236, 361, 586, 602
Bst6I	CTCTTC	2 cut(s)	552, 561
BstACI	GRCGYC	2 cut(s)	46, 516
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	4 cut(s)	54, 102, 269, 653
BstEII	GGTNACC	1 cut(s)	403
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	176, 455, 528
BstKTI	GATC	1 cut(s)	545
BstMAI	GTCTC	3 cut(s)	256, 507, 523
BstMBI	GATC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 326, 335, 500
BstNI	CCWGG	2 cut(s)	302, 434
BstNSI	RCATGY	1 cut(s)	181
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	300, 340, 432
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	338, 503
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	176, 455, 528
BtsIMutI	CAGTG	2 cut(s)	213, 414
Cac8I	GCNNGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	54
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	5 cut(s)	143, 178, 487, 522, 533
DdeI	CTNAG	4 cut(s)	54, 102, 269, 653
DpnI	GATC	1 cut(s)	544
DpnII	GATC	1 cut(s)	542
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	552, 561
EarI	CTCTTC	2 cut(s)	552, 561
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	117, 542
Eco91I	GGTNACC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	300, 432
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	2 cut(s)	507, 523
FaeI	CATG	5 cut(s)	146, 181, 490, 525, 536
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	5 cut(s)	142, 177, 486, 521, 532
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	183, 462, 515
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	338, 503
HapII	CCGG	3 cut(s)	168, 342, 645
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	2 cut(s)	46, 516
Hin1II	CATG	5 cut(s)	146, 181, 490, 525, 536
HinfI	GANTC	5 cut(s)	197, 209, 287, 395, 565
HpaII	CCGG	3 cut(s)	168, 342, 645
HphI	GGTGA	4 cut(s)	31, 71, 451, 574
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	3 cut(s)	48, 84, 140
HpyAV	CCTTC	4 cut(s)	61, 277, 370, 484
HpyCH4III	ACNGT	7 cut(s)	118, 217, 224, 236, 361, 586, 602
HpyCH4IV	ACGT	2 cut(s)	135, 516
HpyCH4V	TGCA	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 326, 335, 500
HpyF3I	CTNAG	4 cut(s)	54, 102, 269, 653
HpySE526I	ACGT	2 cut(s)	135, 516
Hsp92I	GRCGYC	2 cut(s)	46, 516
Hsp92II	CATG	5 cut(s)	146, 181, 490, 525, 536
Kzo9I	GATC	1 cut(s)	542
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	1 cut(s)	34
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	2 cut(s)	135, 516
MaeIII	GTNAC	2 cut(s)	403, 412
MalI	GATC	1 cut(s)	544
MboI	GATC	1 cut(s)	542
MboII	GAAGA	3 cut(s)	163, 539, 548
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	108, 486
MluCI	AATT	2 cut(s)	201, 387
MlyI	GAGTC	4 cut(s)	191, 203, 281, 389
MnlI	CCTC	4 cut(s)	103, 284, 374, 472
MroXI	GAANNNNTTC	1 cut(s)	494
MslI	CAYNNNNRTG	2 cut(s)	261, 531
MspI	CCGG	3 cut(s)	168, 342, 645
MspR9I	CCNGG	3 cut(s)	302, 342, 434
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	2 cut(s)	448, 494
MvaI	CCWGG	2 cut(s)	302, 434
MwoI	GCNNNNNNNGC	4 cut(s)	98, 326, 335, 500
NciI	CCSGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	542
NlaIII	CATG	5 cut(s)	146, 181, 490, 525, 536
NlaIV	GGNNCC	2 cut(s)	159, 339
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	561
PctI	GAATGC	2 cut(s)	448, 494
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	4 cut(s)	191, 203, 281, 389
PpsI	GAGTC	4 cut(s)	191, 203, 281, 389
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	300, 432
PspEI	GGTNACC	1 cut(s)	403
PspGI	CCWGG	2 cut(s)	300, 432
PspN4I	GGNNCC	2 cut(s)	159, 339
PspPI	GGNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	542
RseI	CAYNNNNRTG	2 cut(s)	261, 531
SacI	GAGCTC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	561
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	542
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	4 cut(s)	191, 203, 281, 389
ScrFI	CCNGG	3 cut(s)	302, 342, 434
SduI	GDGCHC	2 cut(s)	108, 486
SexAI	ACCWGGT	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	261, 531
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	2 cut(s)	201, 387
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	3 cut(s)	300, 340, 432
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	7 cut(s)	118, 217, 224, 236, 361, 586, 602
TaiI	ACGT	2 cut(s)	138, 519
TaqI	TCGA	1 cut(s)	82
TasI	AATT	2 cut(s)	201, 387
TfiI	GAWTC	1 cut(s)	565
TscAI	CASTG	2 cut(s)	220, 421
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	220, 421
XagI	CCTNNNNNAGG	1 cut(s)	53
XceI	RCATGY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	3 cut(s)	140, 168, 298
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.