Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016484

Physical Location & Seq

Genomic Coordinates Reverse (-)

4089664 .. 4090857

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCAAGTTCCATAGCTCTTTTCTTGGCTCTCAATCTTCTCTTTTTCACAACAATCTCCGCCTGTGGTAGCTGTACTCCGTGCGGCGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAACTCCTAAACCAACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCAAGCTCGGTGTCTGCGCTAATGTGCTCAACGGCCTCCTGGACTTGACCCTTGGCAAGCCACCGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAGGCAGCCGTTTGTCTCTGCACCGCTCTTAAGGCTAACATTCTTGGAATCAACTTGAACCTCCCAATATCTTTAAGTCTACTCCTTAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009707 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009941 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0012505 GO:0016020 GO:0019867 GO:0022622 GO:0030054 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

137

Amino Acids

13.91

Weight (kDa)

8.48

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	55 - 137	5.6e-28	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	55 - 137	3.2e-16	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12090 AT1G62510
fragaria_vesca	FvH4_5g18321
malus_domestica	MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica	Prupe.5G073200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202791
rosa_laevigata	RLG00000003571
rosa_multiflora	Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii	Rroxscaffold_3G00254260
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG200900
rosa_wichuraiana	Rw7G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	364
AciI	CCGC	4 cut(s)	63, 87, 90, 309
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	89, 149
AflII	CTTAAG	1 cut(s)	314
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	9, 343
AjnI	CCWGG	2 cut(s)	216, 397
AluBI	AGCT	4 cut(s)	20, 75, 147, 184
AluI	AGCT	4 cut(s)	20, 75, 147, 184
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	255, 258, 290, 381
AsiGI	ACCGGT	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	242, 270, 302, 393
BceAI	ACGGC	2 cut(s)	226, 278
BciT130I	CCWGG	2 cut(s)	218, 399
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	256
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	5 cut(s)	88, 256, 259, 291, 382
BlsI	GCNGC	5 cut(s)	89, 257, 260, 292, 383
Bme1390I	CCNGG	2 cut(s)	218, 399
BmeT110I	CYCGRG	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	218, 399
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	229, 268
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 149
Bse118I	RCCGGY	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	218, 399
BseDI	CCNNGG	2 cut(s)	229, 268
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	89, 149
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	4 cut(s)	242, 270, 302, 393
BsgI	GTGCAG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	89, 149
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	167, 207
BspACI	CCGC	4 cut(s)	63, 87, 90, 309
BspANI	GGCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	229, 268
BssT1I	CCWWGG	2 cut(s)	229, 268
Bst2UI	CCWGG	2 cut(s)	218, 399
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	305
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 317, 408
BstNI	CCWGG	2 cut(s)	218, 399
BstSCI	CCNGG	2 cut(s)	216, 397
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	4 cut(s)	242, 270, 302, 393
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	1 cut(s)	252
CviQI	GTAC	1 cut(s)	78
EciI	GGCGGA	2 cut(s)	52, 105
Eco130I	CCWWGG	2 cut(s)	229, 268
Eco88I	CYCGRG	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	216, 397
EcoT14I	CCWWGG	2 cut(s)	229, 268
ErhI	CCWWGG	2 cut(s)	229, 268
FaeI	CATG	1 cut(s)	255
FaiI	YATR	2 cut(s)	17, 253
FatI	CATG	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	88, 256, 259, 291, 382
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	5 cut(s)	88, 256, 259, 291, 382
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	88, 256, 259, 291, 382
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	242
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	273, 333
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	258, 306, 381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 317, 408
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	79, 135, 203, 230, 255, 384
Lsp1109I	GCAGC	4 cut(s)	242, 270, 302, 393
MaeI	CTAG	1 cut(s)	144
MbiI	CCGCTC	1 cut(s)	311
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	167, 207
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	86, 112, 188, 224, 272, 280, 356, 405
MseI	TTAA	3 cut(s)	315, 359, 372
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	218, 399
MvaI	CCWGG	2 cut(s)	218, 399
MwoI	GCNNNNNNNGC	3 cut(s)	96, 317, 408
NlaIII	CATG	1 cut(s)	255
PaeR7I	CTCGAG	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	216
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	5 cut(s)	89, 257, 260, 292, 383
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	216, 397
PspGI	CCWGG	2 cut(s)	216, 397
PspXI	VCTCGAGB	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	315, 359, 372
SatI	GCNGC	5 cut(s)	88, 256, 259, 291, 382
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	218, 399
SduI	GDGCHC	2 cut(s)	167, 207
SetI	ASST	6 cut(s)	22, 77, 97, 149, 186, 348
SfcI	CTRYAG	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	154
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	3 cut(s)	154, 179, 314
SmoI	CTYRAG	3 cut(s)	154, 179, 314
SsiI	CCGC	4 cut(s)	63, 87, 90, 309
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	216, 397
StyI	CCWWGG	2 cut(s)	229, 268
TaqI	TCGA	2 cut(s)	155, 246
TatI	WGTACW	1 cut(s)	77
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	3 cut(s)	315, 359, 372
Tru9I	TTAA	3 cut(s)	315, 359, 372
TseI	GCWGC	4 cut(s)	255, 258, 290, 381
TspGWI	ACGGA	1 cut(s)	72
Vha464I	CTTAAG	1 cut(s)	314
XhoI	CTCGAG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.