Prupe.5G073200_v2.0.a1

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016484
Physical Location & Seq
Reverse (-)
8753751 .. 8754853
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G073200.1

Sequence Viewer

Length: 435 bp
ATGGCTTCCAAAACAACTGCCTCCCTTAGTCTCTTCCTTGCACTCAATCTCCTCTTCTTTGCTCTTGTAAGTTCTTGCGGCACGTGCCCCGGTCCTAACCCTAGACCAAGGCCAAACCCAAGGCCAAGCCCCACCCCTTCCACACCTTCTACACCTTCCACACCTTCCACAGGTACCAGATGCCCTAGAGATACCCTCAAATTAGGGGTTTGTGCTAATGTTCTCAATGGGTTGCTTAACATCACCATTGGTAAACCTCCTGTAGCGCCTTGCTGCAGTCTCATCCAAGGCCTTGCTGATGTTGAAGCTGCTGTGTGCCTCTGCACTGCGATCAAAGCCAACATTTTGGGAATCAACCTCAACATTCCAATTTCTCTGAGCTTGCTTCTTAATGTTTGCGGCAATAAGGTTCCTAAAGATTTCCAATGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

145

Amino Acids

14.84

Weight (kDa)

9.07

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12090 AT1G62510
fragaria_vesca FvH4_5g18321
malus_domestica MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica Prupe.5G073200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202791
rosa_laevigata RLG00000003571
rosa_multiflora Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii Rroxscaffold_3G00254260
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200900
rosa_wichuraiana Rw7G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 78, 399
AcvI CACGTG 1 cut(s) 84
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 308, 381
AluI AGCT 2 cut(s) 308, 381
Alw26I GTCTC 2 cut(s) 35, 284
AoxI GGCC 3 cut(s) 110, 122, 289
ApeKI GCWGC 2 cut(s) 273, 308
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 173
BbrPI CACGTG 1 cut(s) 84
BbvI GCAGC 2 cut(s) 260, 295
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 35, 284
BfaI CTAG 2 cut(s) 102, 186
BfmI CTRYAG 2 cut(s) 261, 274
BfoI RGCGCY 1 cut(s) 269
BisI GCNGC 4 cut(s) 79, 274, 309, 400
BlsI GCNGC 4 cut(s) 80, 275, 310, 401
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 175, 411
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuMI CCSGG 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 88, 107, 119, 286
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 88, 107, 119, 286
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 260, 295
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 3 cut(s) 112, 124, 291
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 35, 284
BsnI GGCC 3 cut(s) 112, 124, 291
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 330
BspACI CCGC 2 cut(s) 78, 399
BspANI GGCC 3 cut(s) 112, 124, 291
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 175, 411
BspMAI CTGCAG 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 88, 107, 119, 286
BssMI GATC 1 cut(s) 330
BssT1I CCWWGG 3 cut(s) 107, 119, 286
Bst6I CTCTTC 2 cut(s) 38, 59
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 2 cut(s) 26, 377
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 2 cut(s) 35, 284
BstMBI GATC 1 cut(s) 330
BstMWI GCNNNNNNNGC 2 cut(s) 84, 335
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 2 cut(s) 261, 274
BstSLI GKGCMC 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 260, 295
BstXI CCANNNNNNTGG 1 cut(s) 346
BsuRI GGCC 3 cut(s) 112, 124, 291
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 8 cut(s) 5, 112, 124, 129, 291, 308, 338, 381
CviKI_1 RGCY 8 cut(s) 5, 112, 124, 129, 291, 308, 338, 381
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 2 cut(s) 26, 377
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 38, 59
EarI CTCTTC 2 cut(s) 38, 59
Eco130I CCWWGG 3 cut(s) 107, 119, 286
Eco147I AGGCCT 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 107, 119, 286
ErhI CCWWGG 3 cut(s) 107, 119, 286
Fnu4HI GCNGC 4 cut(s) 79, 274, 309, 400
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 79, 274, 309, 400
FspBI CTAG 2 cut(s) 102, 186
GlaI GCGC 1 cut(s) 267
GluI GCNGC 4 cut(s) 79, 274, 309, 400
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 3 cut(s) 112, 124, 291
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 1 cut(s) 351
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 378
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 147, 156, 165, 174
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 41, 276, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 335
HpyF3I CTNAG 2 cut(s) 26, 377
HpySE526I ACGT 1 cut(s) 83
HspAI GCGC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 330
LpnPI CCDG 4 cut(s) 103, 156, 190, 273
Lsp1109I GCAGC 2 cut(s) 260, 295
LweI GCATC 1 cut(s) 170
MaeI CTAG 2 cut(s) 102, 186
MaeII ACGT 1 cut(s) 83
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 2 cut(s) 25, 46
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 2 cut(s) 200, 369
MnlI CCTC 6 cut(s) 31, 62, 206, 267, 329, 368
MseI TTAA 2 cut(s) 237, 390
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 84, 335
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 330
NlaIV GGNNCC 2 cut(s) 175, 411
PceI AGGCCT 1 cut(s) 291
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 4 cut(s) 80, 275, 310, 401
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
Ppu21I YACGTR 1 cut(s) 84
PspCI CACGTG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 175, 411
PspPI GGNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 237, 390
SatI GCNGC 4 cut(s) 79, 274, 309, 400
Sau3AI GATC 1 cut(s) 330
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 2 cut(s) 261, 274
SinI GGWCC 1 cut(s) 92
Sse9I AATT 2 cut(s) 200, 369
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 2 cut(s) 78, 399
SspMI CTAG 2 cut(s) 102, 186
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 3 cut(s) 107, 119, 286
TaiI ACGT 1 cut(s) 86
TasI AATT 2 cut(s) 200, 369
TauI GCSGC 2 cut(s) 81, 402
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 2 cut(s) 237, 390
Tru9I TTAA 2 cut(s) 237, 390
TscAI CASTG 1 cut(s) 331
TseI GCWGC 2 cut(s) 273, 308
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 168
XspI CTAG 2 cut(s) 102, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.