MD06G1062000.v1.1

14 kDa proline-rich protein DC2.15-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
10095205 .. 10096031
827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1062000.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGCATCCAAAACAACTTCCTCGCTTGCTCTCTTCCTTGCACTCAATCTCTTCTTCTTTGCCCTGGTCAGTTCTTGTGGCACATGCCCCAACCCTAATCCAAAACCAAGGCCAAAGCCAAATCCGACGCCAAAACCTAGCCCTTCAACCGGCACCAGCTGCCCTAGAGATACCCTCAAATTAGGGGTTTGTGCTAATGTCCTCAATGGGTTACTTAACATCACCATTGGCAAACCTCCCGTAGAACCTTGCTGCTCTCTCATCCAAGGGCTCGCTGACCTTGAGGCTGCTGTGTGCCTTTGCACTGCCATCAAAGCCAACATTTTGGGTATCAACCTCAACATTCCAATTTCTCTCAGCTTGCTTCTTAATGTTTGTGGAAATAAGGTTCCCAAAGGTTTCCAATGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

14.19

Weight (kDa)

9.03

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 54 - 137 5e-29 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 54 - 136 2.2e-17 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12090 AT1G62510
fragaria_vesca FvH4_5g18321
malus_domestica MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica Prupe.5G073200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202791
rosa_laevigata RLG00000003571
rosa_multiflora Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii Rroxscaffold_3G00254260
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200900
rosa_wichuraiana Rw7G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 2 cut(s) 159, 360
AluI AGCT 2 cut(s) 159, 360
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 159, 252, 287
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 146, 239, 274
BccI CCATC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 65
BfaI CTAG 2 cut(s) 138, 165
BisI GCNGC 3 cut(s) 160, 253, 288
BlsI GCNGC 3 cut(s) 161, 254, 289
Bme1390I CCNGG 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 154, 390
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpuEI CTTGAG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 63, 107, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 149
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 63, 107, 265
BseGI GGATG 2 cut(s) 5, 261
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 370
BseXI GCAGC 3 cut(s) 146, 239, 274
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 273
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 154, 390
BspT107I GGYRCC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 63, 107, 265
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 107, 265
Bst2UI CCWGG 1 cut(s) 65
Bst6I CTCTTC 2 cut(s) 38, 56
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 27, 273, 362
BstDEI CTNAG 1 cut(s) 356
BstF5I GGATG 2 cut(s) 5, 261
BstMWI GCNNNNNNNGC 2 cut(s) 159, 314
BstNI CCWGG 1 cut(s) 65
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 63
BstV1I GCAGC 3 cut(s) 146, 239, 274
BstXI CCANNNNNNTGG 1 cut(s) 325
BsuRI GGCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 5, 261
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 27, 273, 362
Cfr10I RCCGGY 1 cut(s) 149
CseI GACGC 1 cut(s) 136
CviAII CATG 1 cut(s) 84
CviJI RGCY 8 cut(s) 112, 118, 141, 159, 271, 287, 317, 360
CviKI_1 RGCY 8 cut(s) 112, 118, 141, 159, 271, 287, 317, 360
DdeI CTNAG 1 cut(s) 356
Eam1104I CTCTTC 2 cut(s) 38, 56
EarI CTCTTC 2 cut(s) 38, 56
Eco130I CCWWGG 2 cut(s) 107, 265
Eco24I GRGCYC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 107, 265
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 107, 265
FaeI CATG 1 cut(s) 87
FaiI YATR 1 cut(s) 85
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 160, 253, 288
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 160, 253, 288
FspBI CTAG 2 cut(s) 138, 165
GluI GCNGC 3 cut(s) 160, 253, 288
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 87
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 41, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 314
HpyF3I CTNAG 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 87
LpnPI CCDG 4 cut(s) 50, 77, 163, 169
Lsp1109I GCAGC 3 cut(s) 146, 239, 274
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 138, 165
MaeIII GTNAC 1 cut(s) 210
MboII GAAGA 3 cut(s) 25, 43, 46
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 179, 348
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 6 cut(s) 31, 185, 212, 246, 277, 347
MseI TTAA 2 cut(s) 216, 369
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 159, 314
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 2 cut(s) 154, 390
NspI RCATGY 1 cut(s) 87
PkrI GCNGC 3 cut(s) 161, 254, 289
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 154, 390
PvuII CAGCTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 216, 369
SatI GCNGC 3 cut(s) 160, 253, 288
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 1 cut(s) 273
SetI ASST 9 cut(s) 139, 161, 238, 250, 282, 339, 362, 390, 400
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 179, 348
SspMI CTAG 2 cut(s) 138, 165
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 107, 265
TasI AATT 2 cut(s) 179, 348
Tru1I TTAA 2 cut(s) 216, 369
Tru9I TTAA 2 cut(s) 216, 369
TscAI CASTG 1 cut(s) 310
TseI GCWGC 3 cut(s) 159, 252, 287
TspRI CASTG 1 cut(s) 310
XceI RCATGY 1 cut(s) 87
XspI CTAG 2 cut(s) 138, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.