RchiOBHm_Chr7g0202791

Hydrophobic seed protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
20495068 .. 20496821
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18152

Sequence Viewer

Length: 540 bp
ATGGCTTCCAGAAGCACTGCCTCACTTGCTCTCTTCCTGGCAGTCAATCTCCTCTTCTTCACCATGGTTGCTAATGCCTGCAACACATGCCCTCAGCCGAAGCCAAGGCCGAATCCAAGGCCGAATCCAAGGCCGAATCCGAGGCCGAATCCGAATCCGAATCCGAATCCCAATCCCAATCCCAATCCCAATCCCAATCCGAATCCGAATCCGAATCCAAATCCGAATCCGAATCCGAATCCGAATCCGAATCCGAATCCAAATCCCACCCCATCCAGGGGTACTTGCCCTAGGGATACCCTAAAATTGGGGGTTTGTGCTAATGTCCTCAACGGGTTGCTTAACCTCACCATTGGCAATCCTCCAGTTAAACCTTGCTGCACTCTCATCCAAGGCCTTGCTGACCTTGAAGCTGCTGTATGCCTCTGCACTGCCATCAGAGCCAACATTCTGGGCATCAACCTCAACATTCCGGTTTCTCTCAGCTTGCTTCTTAATGTCTGTGGAAACCGGGTCCCAAGAGGGTTCCAATGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

18.94

Weight (kDa)

9.62

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 87 - 178 4.5e-07 Probable lipid transfer
Hydrophob_seed PF14547 95 - 179 6e-29 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 96 - 178 1.4e-16 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12090 AT1G62510
fragaria_vesca FvH4_5g18321
malus_domestica MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica Prupe.5G073200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202791
rosa_laevigata RLG00000003571
rosa_multiflora Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii Rroxscaffold_3G00254260
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200900
rosa_wichuraiana Rw7G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 276, 277, 278, 307
AgsI TTSAA 1 cut(s) 410
AjnI CCWGG 2 cut(s) 36, 275
AluBI AGCT 2 cut(s) 413, 486
AluI AGCT 2 cut(s) 413, 486
AoxI GGCC 5 cut(s) 107, 119, 131, 143, 394
ApeKI GCWGC 2 cut(s) 378, 413
AspA2I CCTAGG 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 52, 340
AvaII GGWCC 1 cut(s) 514
AvrII CCTAGG 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 365, 400
BccI CCATC 2 cut(s) 280, 443
BciT130I CCWGG 2 cut(s) 38, 277
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 512
BfaI CTAG 2 cut(s) 291, 538
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 2 cut(s) 379, 414
BlnI CCTAGG 1 cut(s) 290
BlsI GCNGC 2 cut(s) 380, 415
Bme1390I CCNGG 3 cut(s) 38, 277, 512
Bme18I GGWCC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 3 cut(s) 515, 516, 527
BmrFI CCNGG 3 cut(s) 38, 277, 512
BmsI GCATC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 512
BsaJI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 276, 290, 391
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 4 cut(s) 276, 277, 278, 307
Bse1I ACTGG 1 cut(s) 365
BseBI CCWGG 2 cut(s) 38, 277
BseDI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 276, 290, 391
BseGI GGATG 2 cut(s) 272, 387
BseLI CCNNNNNNNGG 4 cut(s) 276, 277, 278, 307
BseMII CTCAG 2 cut(s) 107, 496
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 365, 400
BsgI GTGCAG 2 cut(s) 364, 412
BshFI GGCC 5 cut(s) 109, 121, 133, 145, 396
BsiSI CCGG 2 cut(s) 473, 511
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 4 cut(s) 276, 277, 278, 307
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 5 cut(s) 109, 121, 133, 145, 396
Bsp19I CCATGG 1 cut(s) 63
BspANI GGCC 5 cut(s) 109, 121, 133, 145, 396
BspCNI CTCAG 2 cut(s) 106, 495
BspLI GGNNCC 3 cut(s) 515, 516, 527
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 276, 290, 391
BssT1I CCWWGG 6 cut(s) 63, 104, 116, 128, 290, 391
Bst2UI CCWGG 2 cut(s) 38, 277
Bst6I CTCTTC 2 cut(s) 38, 59
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 79, 488
BstDEI CTNAG 2 cut(s) 93, 482
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 272, 387
BstMWI GCNNNNNNNGC 3 cut(s) 26, 87, 440
BstNI CCWGG 2 cut(s) 38, 277
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 36, 275, 510
BstV1I GCAGC 2 cut(s) 365, 400
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 5 cut(s) 109, 121, 133, 145, 396
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 272, 387
BtsI GCAGTG 2 cut(s) 15, 429
BtsIMutI CAGTG 2 cut(s) 15, 429
Cac8I GCNNGC 2 cut(s) 79, 488
Cfr13I GGNCC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 282
CviAII CATG 2 cut(s) 64, 87
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 93, 482
Eam1104I CTCTTC 2 cut(s) 38, 59
EarI CTCTTC 2 cut(s) 38, 59
Eco130I CCWWGG 6 cut(s) 63, 104, 116, 128, 290, 391
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 36, 275
EcoT14I CCWWGG 6 cut(s) 63, 104, 116, 128, 290, 391
ErhI CCWWGG 6 cut(s) 63, 104, 116, 128, 290, 391
FaeI CATG 2 cut(s) 67, 90
FaiI YATR 3 cut(s) 65, 88, 421
FaqI GGGAC 1 cut(s) 500
FatI CATG 2 cut(s) 63, 86
Fnu4HI GCNGC 2 cut(s) 379, 414
FokI GGATG 2 cut(s) 259, 374
Fsp4HI GCNGC 2 cut(s) 379, 414
FspBI CTAG 2 cut(s) 291, 538
GluI GCNGC 2 cut(s) 379, 414
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 5 cut(s) 109, 121, 133, 145, 396
HapII CCGG 2 cut(s) 473, 511
Hin1II CATG 2 cut(s) 67, 90
HpaII CCGG 2 cut(s) 473, 511
HphI GGTGA 2 cut(s) 52, 340
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 81, 381, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 87, 440
HpyF3I CTNAG 2 cut(s) 93, 482
Hsp92II CATG 2 cut(s) 67, 90
KflI GGGWCCC 1 cut(s) 514
Lsp1109I GCAGC 2 cut(s) 365, 400
LweI GCATC 1 cut(s) 465
MaeI CTAG 2 cut(s) 291, 538
MboII GAAGA 3 cut(s) 25, 46, 49
MluCI AATT 1 cut(s) 305
MseI TTAA 3 cut(s) 342, 369, 495
MspI CCGG 2 cut(s) 473, 511
MspR9I CCNGG 3 cut(s) 38, 277, 512
MvaI CCWGG 2 cut(s) 38, 277
MwoI GCNNNNNNNGC 3 cut(s) 26, 87, 440
NciI CCSGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 67, 90
NlaIV GGNNCC 3 cut(s) 515, 516, 527
NspI RCATGY 1 cut(s) 90
PceI AGGCCT 1 cut(s) 396
PkrI GCNGC 2 cut(s) 380, 415
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 2 cut(s) 36, 275
PspGI CCWGG 2 cut(s) 36, 275
PspN4I GGNNCC 3 cut(s) 515, 516, 527
PspPI GGNCC 1 cut(s) 514
PspPPI RGGWCCY 1 cut(s) 514
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 342, 369, 495
SatI GCNGC 2 cut(s) 379, 414
Sau96I GGNCC 1 cut(s) 514
ScrFI CCNGG 3 cut(s) 38, 277, 512
SetI ASST 6 cut(s) 348, 376, 408, 415, 465, 488
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 1 cut(s) 514
Sse9I AATT 1 cut(s) 305
SseBI AGGCCT 1 cut(s) 396
SspMI CTAG 2 cut(s) 291, 538
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 3 cut(s) 36, 275, 510
StyI CCWWGG 6 cut(s) 63, 104, 116, 128, 290, 391
TasI AATT 1 cut(s) 305
Tru1I TTAA 3 cut(s) 342, 369, 495
Tru9I TTAA 3 cut(s) 342, 369, 495
TscAI CASTG 2 cut(s) 22, 436
TseI GCWGC 2 cut(s) 378, 413
TspRI CASTG 2 cut(s) 22, 436
VpaK11BI GGWCC 1 cut(s) 514
XceI RCATGY 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 2 cut(s) 291, 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.