Rmu_sc0002590.1_g000022

Hydrophobic seed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002590.1
OG0016484
Physical Location & Seq
Forward (+)
76087 .. 76620
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002590.1_g000022.1.cds

Sequence Viewer

Length: 534 bp
atggcttccagaagcactgcctcacttgctctcttcctggcattcaatctcctcttcttcaccatggttgctaatgcctgcaacacatgccctcagccgaagccgaggccgaatccaaggccgaatccaaggccgaatccaaggccgaatccgaatccgaatcccaatcccaatcccaatcccaatcccaatcccaatccaaatccgaatccgaatccgaatccaaatccaaatccgaatccgaatccgaatccaaaccccaccccatccaggggtacttgccctagggataccctaaaattgggggtttgtgctaatgtcctcaacgggttgcttaacctcaccattggcaatcctccagttcaaccttgctgctctctcatccaaggccttgctgaccttgaagctgctgtatgcctctgcactgccatcagagccaacattctgggcatcaacctcaacattccggtttctctcagcttgcttcttaatgtctgtggaaaccgggtcccaagagggttccaatgtgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

177

Amino Acids

18.76

Weight (kDa)

9.48

Isoelectric Point (pI)

27.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12090 AT1G62510
fragaria_vesca FvH4_5g18321
malus_domestica MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica Prupe.5G073200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202791
rosa_laevigata RLG00000003571
rosa_multiflora Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii Rroxscaffold_3G00254260
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200900
rosa_wichuraiana Rw7G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 4 cut(s) 270, 271, 272, 301
AgsI TTSAA 3 cut(s) 46, 365, 404
AjnI CCWGG 2 cut(s) 36, 269
AluBI AGCT 2 cut(s) 407, 480
AluI AGCT 2 cut(s) 407, 480
AoxI GGCC 5 cut(s) 107, 119, 131, 143, 388
ApeKI GCWGC 2 cut(s) 372, 407
AspA2I CCTAGG 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 508
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 52, 334
AvaII GGWCC 1 cut(s) 508
AvrII CCTAGG 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 359, 394
BccI CCATC 2 cut(s) 274, 437
BciT130I CCWGG 2 cut(s) 38, 271
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 506
BfaI CTAG 2 cut(s) 285, 532
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 2 cut(s) 373, 408
BlnI CCTAGG 1 cut(s) 284
BlsI GCNGC 2 cut(s) 374, 409
Bme1390I CCNGG 3 cut(s) 38, 271, 506
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 3 cut(s) 509, 510, 521
BmrFI CCNGG 3 cut(s) 38, 271, 506
BmsI GCATC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 506
BsaJI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 270, 284, 385
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 271, 272, 301
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 2 cut(s) 38, 271
BseDI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 270, 284, 385
BseGI GGATG 2 cut(s) 266, 381
BseLI CCNNNNNNNGG 4 cut(s) 270, 271, 272, 301
BseMII CTCAG 2 cut(s) 107, 490
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 359, 394
BsgI GTGCAG 1 cut(s) 406
BshFI GGCC 5 cut(s) 109, 121, 133, 145, 390
BsiSI CCGG 2 cut(s) 467, 505
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 4 cut(s) 270, 271, 272, 301
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 5 cut(s) 109, 121, 133, 145, 390
Bsp19I CCATGG 1 cut(s) 63
BspANI GGCC 5 cut(s) 109, 121, 133, 145, 390
BspCNI CTCAG 2 cut(s) 106, 489
BspLI GGNNCC 3 cut(s) 509, 510, 521
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 8 cut(s) 63, 104, 116, 128, 140, 270, 284, 385
BssT1I CCWWGG 6 cut(s) 63, 116, 128, 140, 284, 385
Bst2UI CCWGG 2 cut(s) 38, 271
Bst6I CTCTTC 2 cut(s) 38, 59
BstAPI GCANNNNNTGC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 79, 482
BstDEI CTNAG 2 cut(s) 93, 476
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 266, 381
BstMWI GCNNNNNNNGC 3 cut(s) 26, 87, 434
BstNI CCWGG 2 cut(s) 38, 271
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 36, 269, 504
BstV1I GCAGC 2 cut(s) 359, 394
BstXI CCANNNNNNTGG 1 cut(s) 445
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 5 cut(s) 109, 121, 133, 145, 390
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 266, 381
BtsI GCAGTG 2 cut(s) 15, 423
BtsIMutI CAGTG 2 cut(s) 15, 423
Cac8I GCNNGC 2 cut(s) 79, 482
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 1 cut(s) 276
CviAII CATG 2 cut(s) 64, 87
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 93, 476
Eam1104I CTCTTC 2 cut(s) 38, 59
EarI CTCTTC 2 cut(s) 38, 59
Eco130I CCWWGG 6 cut(s) 63, 116, 128, 140, 284, 385
Eco147I AGGCCT 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 36, 269
EcoT14I CCWWGG 6 cut(s) 63, 116, 128, 140, 284, 385
ErhI CCWWGG 6 cut(s) 63, 116, 128, 140, 284, 385
FaeI CATG 2 cut(s) 67, 90
FaiI YATR 3 cut(s) 65, 88, 415
FaqI GGGAC 1 cut(s) 494
FatI CATG 2 cut(s) 63, 86
Fnu4HI GCNGC 2 cut(s) 373, 408
FokI GGATG 2 cut(s) 253, 368
Fsp4HI GCNGC 2 cut(s) 373, 408
FspBI CTAG 2 cut(s) 285, 532
GluI GCNGC 2 cut(s) 373, 408
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 5 cut(s) 109, 121, 133, 145, 390
HapII CCGG 2 cut(s) 467, 505
Hin1II CATG 2 cut(s) 67, 90
HpaII CCGG 2 cut(s) 467, 505
HphI GGTGA 2 cut(s) 52, 334
Hpy188I TCNGA 9 cut(s) 153, 159, 207, 213, 219, 237, 243, 249, 434
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 81, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 87, 434
HpyF3I CTNAG 2 cut(s) 93, 476
Hsp92II CATG 2 cut(s) 67, 90
KflI GGGWCCC 1 cut(s) 508
Lsp1109I GCAGC 2 cut(s) 359, 394
LweI GCATC 1 cut(s) 459
MaeI CTAG 2 cut(s) 285, 532
MboII GAAGA 3 cut(s) 25, 46, 49
MluCI AATT 1 cut(s) 299
MseI TTAA 2 cut(s) 336, 489
MspI CCGG 2 cut(s) 467, 505
MspR9I CCNGG 3 cut(s) 38, 271, 506
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 2 cut(s) 38, 271
MwoI GCNNNNNNNGC 3 cut(s) 26, 87, 434
NciI CCSGG 1 cut(s) 506
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 67, 90
NlaIV GGNNCC 3 cut(s) 509, 510, 521
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 90
PceI AGGCCT 1 cut(s) 390
PctI GAATGC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 374, 409
PpuMI RGGWCCY 1 cut(s) 508
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 2 cut(s) 36, 269
PspGI CCWGG 2 cut(s) 36, 269
PspN4I GGNNCC 3 cut(s) 509, 510, 521
PspPI GGNCC 1 cut(s) 508
PspPPI RGGWCCY 1 cut(s) 508
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 336, 489
SatI GCNGC 2 cut(s) 373, 408
Sau96I GGNCC 1 cut(s) 508
ScrFI CCNGG 3 cut(s) 38, 271, 506
SetI ASST 6 cut(s) 342, 370, 402, 409, 459, 482
SfaNI GCATC 1 cut(s) 459
SinI GGWCC 1 cut(s) 508
Sse9I AATT 1 cut(s) 299
SseBI AGGCCT 1 cut(s) 390
SspMI CTAG 2 cut(s) 285, 532
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 3 cut(s) 36, 269, 504
StyI CCWWGG 6 cut(s) 63, 116, 128, 140, 284, 385
TasI AATT 1 cut(s) 299
Tru1I TTAA 2 cut(s) 336, 489
Tru9I TTAA 2 cut(s) 336, 489
TscAI CASTG 2 cut(s) 22, 430
TseI GCWGC 2 cut(s) 372, 407
TspRI CASTG 2 cut(s) 22, 430
VpaK11BI GGWCC 1 cut(s) 508
XceI RCATGY 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 284
XspI CTAG 2 cut(s) 285, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.