MD04G1087300.v1.1

14 kDa proline-rich protein DC2.15-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
12905035 .. 12905603
569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1087300.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGCATCCAAAACGACGTCCTCACTTGCTCTCTTCCTTGCACTCAATCTCTTCTTCTTTGCCCTTGTCAGTTCTTGTGGCACATGCCCCGGCCCTAAGCCGAAGCCAAAGCCAAAGCCAAAGCCAAAGCCGACACCGAAACCTAGTCCTTCCACTGGCACCAGCTGCCCTAGAGATACCCTCAAATTAGGGGTTTGTGCTAATGTCCTCAATGGGTTACTTAACATCAGCGTTGGCAAACCTCCCGTAGAACCTTGCTGCTCTCTCATCCAAGGCCTTGCTGACCTTGAGGCTGCTGTATGCCTTTGCACTGCTCTCAAAGCCAACATTTTGGGTATCAACCTCAACATTCCAGTTTCTCTCAGCTTGCTTCTTAATGTTTGTGGAAATAAGGTTCCCAAAGGTTTCCAGTGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

14.32

Weight (kDa)

9.32

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrophob_seed PF14547 56 - 139 2.7e-28 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 56 - 138 8.2e-17 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12090 AT1G62510
fragaria_vesca FvH4_5g18321
malus_domestica MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica Prupe.5G073200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0202791
rosa_laevigata RLG00000003571
rosa_multiflora Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii Rroxscaffold_3G00254260
rosa_rugosa Rorug07G0073200
rosa_samantha Rh7AG200900
rosa_wichuraiana Rw7G017570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 20
AccB1I GGYRCC 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 155
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 2 cut(s) 165, 366
AluI AGCT 2 cut(s) 165, 366
AoxI GGCC 2 cut(s) 91, 274
ApeKI GCWGC 3 cut(s) 165, 258, 293
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 90
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 152, 245, 280
BcnI CCSGG 1 cut(s) 90
BfaI CTAG 2 cut(s) 144, 171
BisI GCNGC 3 cut(s) 166, 259, 294
BlsI GCNGC 3 cut(s) 167, 260, 295
Bme1390I CCNGG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 160, 396
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 165, 197
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 88, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 160, 353, 409
BseDI CCNNGG 2 cut(s) 88, 271
BseGI GGATG 2 cut(s) 5, 267
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 376
BseNI ACTGG 3 cut(s) 160, 353, 409
BseXI GCAGC 3 cut(s) 152, 245, 280
BshFI GGCC 2 cut(s) 93, 276
BshNI GGYRCC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 155
BsnI GGCC 2 cut(s) 93, 276
BspANI GGCC 2 cut(s) 93, 276
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 160, 396
BspT107I GGYRCC 1 cut(s) 158
BsrI ACTGG 3 cut(s) 160, 353, 409
BssECI CCNNGG 2 cut(s) 88, 271
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 38, 56
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 96, 362
BstF5I GGATG 2 cut(s) 5, 267
BstMWI GCNNNNNNNGC 2 cut(s) 165, 320
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 152, 245, 280
BstXI CCANNNNNNTGG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 93, 276
BtsCI GGATG 2 cut(s) 5, 267
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 153, 309, 416
Cac8I GCNNGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 1 cut(s) 84
DdeI CTNAG 2 cut(s) 96, 362
Eam1104I CTCTTC 2 cut(s) 38, 56
EarI CTCTTC 2 cut(s) 38, 56
Eco130I CCWWGG 1 cut(s) 271
Eco147I AGGCCT 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 87
FaiI YATR 2 cut(s) 85, 301
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 166, 259, 294
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 166, 259, 294
FspBI CTAG 2 cut(s) 144, 171
GluI GCNGC 3 cut(s) 166, 259, 294
HaeIII GGCC 2 cut(s) 93, 276
HapII CCGG 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 87
HpaII CCGG 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 41, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 320
HpyF3I CTNAG 2 cut(s) 96, 362
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 87
LpnPI CCDG 4 cut(s) 103, 141, 175, 366
Lsp1109I GCAGC 3 cut(s) 152, 245, 280
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 144, 171
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 1 cut(s) 216
MboII GAAGA 3 cut(s) 25, 43, 46
MluCI AATT 1 cut(s) 185
MnlI CCTC 6 cut(s) 31, 191, 218, 252, 283, 353
MseI TTAA 2 cut(s) 222, 375
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 165, 320
NciI CCSGG 1 cut(s) 90
NlaIII CATG 1 cut(s) 87
NlaIV GGNNCC 2 cut(s) 160, 396
NspI RCATGY 1 cut(s) 87
PceI AGGCCT 1 cut(s) 276
PkrI GCNGC 3 cut(s) 167, 260, 295
PspN4I GGNNCC 2 cut(s) 160, 396
PspPI GGNCC 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 222, 375
SatI GCNGC 3 cut(s) 166, 259, 294
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 90
SfaNI GCATC 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 276
SspMI CTAG 2 cut(s) 144, 171
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 20
TasI AATT 1 cut(s) 185
Tru1I TTAA 2 cut(s) 222, 375
Tru9I TTAA 2 cut(s) 222, 375
TscAI CASTG 3 cut(s) 160, 316, 416
TseI GCWGC 3 cut(s) 165, 258, 293
TspRI CASTG 3 cut(s) 160, 316, 416
XceI RCATGY 1 cut(s) 87
XspI CTAG 2 cut(s) 144, 171
ZraI GACGTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.