Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016484

Physical Location & Seq

Genomic Coordinates Reverse (-)

23136366 .. 23137254

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTTCAAGAACCACAAAATCTTTAGCTCTTTTCTTGATCCTCAACTTCCTTTTCTTCACAACAATATCCGCCTGCGGTAACTGCGGTTGCCCTTCTCCCAAGCCAAAACATAAACCTAGCCCCTCTCCCAAGCCAAAACCTAACCCTAAACCCAAGCCAACACCACACCCTAGTCCTAGCCCGGCAATAGCCAAATGCCCTAGAGACGCCCTTAAGCTAGGAGTTTGCGCCAACGTACTCAACGGCCTACTAAACGTAACCCTTGGCAAGCCACCGGTCGAGCCATGTTGCACCCTCATCCAAGGACTCGCTGATCTTGAGGCTGCAGCTTGTCTTTGCACTGCGCTCAAGGCTAACATCCTCGGTATCAACCTGAATATCCCACTCTCTCTCAGTCTTCTTCTCAATGTTTGCAGCAAAAAAGTTCCTCGTGGCTTCCAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009707 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009941 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0012505 GO:0016020 GO:0019867 GO:0022622 GO:0030054 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0042170 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0098588 GO:0098805 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

149

Amino Acids

15.62

Weight (kDa)

9.53

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrophob_seed	PF14547	67 - 149	9.6e-28	Hydrophobic seed protein
Tryp_alpha_amyl	PF00234	67 - 149	2.4e-16	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0016484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12090 AT1G62510
fragaria_vesca	FvH4_5g18321
malus_domestica	MD04G1087300.v1.1 MD06G1062000.v1.1
prunus_persica	Prupe.5G073200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0202791
rosa_laevigata	RLG00000003571
rosa_multiflora	Rmu_sc0002590.1_g000022 Rmu_sc0003429.1_g000015
rosa_roxburghii	Rroxscaffold_3G00254260
rosa_rugosa	Rorug07G0073200
rosa_samantha	Rh7AG200900
rosa_wichuraiana	Rw7G017570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 78, 87
AclWI	GGATC	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	9
AluBI	AGCT	3 cut(s)	29, 220, 332
AluI	AGCT	3 cut(s)	29, 220, 332
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	3 cut(s)	326, 329, 417
AsiGI	ACCGGT	1 cut(s)	277
AspLEI	GCGC	2 cut(s)	233, 349
AsuC2I	CCSGG	1 cut(s)	185
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	313, 341, 429
BceAI	ACGGC	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	5 cut(s)	120, 174, 180, 204, 221
BfmI	CTRYAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	327, 330, 418
BlsI	GCNGC	3 cut(s)	328, 331, 419
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	335, 341
BpuMI	CCSGG	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	265, 304, 364
BsaWI	WCCGGW	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	265, 304, 364
BseGI	GGATG	2 cut(s)	300, 360
BseMII	CTCAG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	313, 341, 429
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	249
BshTI	ACCGGT	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	185, 278
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	39, 316
BspACI	CCGC	3 cut(s)	72, 78, 87
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	331
BspPI	GGATC	1 cut(s)	34
BspTI	CTTAAG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	265, 304, 364
BssMI	GATC	2 cut(s)	39, 316
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	265, 304
Bst2BI	CACGAG	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	76, 272
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	300, 360
BstHHI	GCGC	2 cut(s)	233, 349
BstKTI	GATC	2 cut(s)	42, 319
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	39, 316
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 353, 444
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	3 cut(s)	313, 341, 429
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	300, 360
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	76, 272
CfoI	GCGC	2 cut(s)	233, 349
Cfr10I	RCCGGY	1 cut(s)	277
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	277
CviAII	CATG	1 cut(s)	288
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	41, 318
DpnII	GATC	2 cut(s)	39, 316
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	265, 304
EcoT14I	CCWWGG	2 cut(s)	265, 304
ErhI	CCWWGG	2 cut(s)	265, 304
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	1 cut(s)	291
FaiI	YATR	2 cut(s)	114, 289
FatI	CATG	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	327, 330, 418
FokI	GGATG	2 cut(s)	287, 347
Fsp4HI	GCNGC	3 cut(s)	327, 330, 418
FspBI	CTAG	5 cut(s)	120, 174, 180, 204, 221
GlaI	GCGC	2 cut(s)	232, 348
GluI	GCNGC	3 cut(s)	327, 330, 418
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	185, 278
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	2 cut(s)	233, 349
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	291
Hin6I	GCGC	2 cut(s)	231, 347
HinP1I	GCGC	2 cut(s)	231, 347
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	2 cut(s)	185, 278
Hpy188III	TCNNGA	3 cut(s)	9, 37, 320
HpyAV	CCTTC	1 cut(s)	105
HpyCH4IV	ACGT	2 cut(s)	237, 258
HpyCH4V	TGCA	4 cut(s)	294, 329, 342, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 353, 444
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	2 cut(s)	237, 258
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	291
HspAI	GCGC	2 cut(s)	231, 347
Kzo9I	GATC	2 cut(s)	39, 316
LpnPI	CCDG	4 cut(s)	88, 198, 291, 389
Lsp1109I	GCAGC	3 cut(s)	313, 341, 429
MaeI	CTAG	5 cut(s)	120, 174, 180, 204, 221
MaeII	ACGT	2 cut(s)	237, 258
MaeIII	GTNAC	2 cut(s)	80, 259
MalI	GATC	2 cut(s)	41, 318
MboI	GATC	2 cut(s)	39, 316
MboII	GAAGA	3 cut(s)	49, 392, 395
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	53, 136, 308, 316, 374, 441
MseI	TTAA	1 cut(s)	216
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	2 cut(s)	185, 278
MspR9I	CCNGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	84, 353, 444
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	39, 316
NlaIII	CATG	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	328, 331, 419
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	327, 330, 418
Sau3AI	GATC	2 cut(s)	39, 316
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	8 cut(s)	31, 121, 145, 222, 240, 261, 334, 378
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	3 cut(s)	215, 320, 350
SmoI	CTYRAG	3 cut(s)	215, 320, 350
SsiI	CCGC	3 cut(s)	72, 78, 87
SspMI	CTAG	5 cut(s)	120, 174, 180, 204, 221
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	265, 304
TaiI	ACGT	2 cut(s)	240, 261
TaqI	TCGA	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	3 cut(s)	326, 329, 417
TspRI	CASTG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	215
XspI	CTAG	5 cut(s)	120, 174, 180, 204, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.