AT1G12710

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013870
Physical Location & Seq
Reverse (-)
4326739 .. 4328616
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12710.1

Sequence Viewer

Length: 876 bp
ATGGGTGTGGCTCACTCTGATCTTCACAATGATTTGTCTTCTTCATCTTGTTTTGGGGATCGGAATATCTTGAAGCCTGGTTTAGGAGATTTACCAGAGGCGTGTGTGGCTATAATTGTTGAGAATTTGGATCCTGTTGAGATCTGTAGATTCTCAAAGCTCAATAGAGCATTTCGCGGCGCTTCTTGGGCTGATTGTGTTTGGGAATCGAAACTTCCTCAGAATTACAGAGATGTTCTCGAGAAAATCCTTGGTGGCTTCCCTGAAAATTTGCAAAAAAGACACCTTTATGCTTTTCTCTCCAGGATTAACTCATTCGATGATGCCACCAAGAAGGTATGGATAGATAAACGAACCAGTGGTGTTTGTCTATCCATTTCAGCCAAAGGATTATCCATTACAGGCATTGATGATCGTAGATATTGGAGTCATATCCCCACTGATGAATCTCGGTTTTCTTCTGTAGCTTATCTCCAACAAATCTGGTGGTTTGAAGTTGATGGTGAAATCGATTTCCCATTCCCGGTTGGAACCTACAGCATTTTCTTCAGGCTTCAATTAGGCCGGTCGGGCAAGTGGTTTGGTCGACGGGTCTGTAACACAGAACAAGTCCATGGTTGGGACATTAAACCGGTTCGATTTCAACTCTGGACTGAAGATGGTCAATATTCCTCATCTCAATGTATGTTAACTGAGCGGGGAAACTGGATTCATTACCACGCCGGAGACGTTGTTGTCCGGGAATCGAATAGGTCATCGACAAAGATTAAGTTTTCGATGACTCAGATCGATTGTACACATACCAAAGGCGGGTTATCTCTAGACTCTGTAGTCGTGTACCCGAGCTCGTGTAAAGACCAGTTGAAGCGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

291

Amino Acids

33.27

Weight (kDa)

8.04

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 122 - 281 2e-38 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 734, 830
AccBSI CCGCTC 1 cut(s) 697
AccI GTMKAC 1 cut(s) 586
AccII CGCG 1 cut(s) 177
AciI CCGC 4 cut(s) 177, 697, 810, 868
AclWI GGATC 3 cut(s) 66, 125, 138
AcsI RAATTY 2 cut(s) 124, 268
AcuI CTGAAG 2 cut(s) 532, 675
AfaI GTAC 2 cut(s) 796, 839
AfiI CCNNNNNNNGG 4 cut(s) 83, 523, 619, 810
AgeI ACCGGT 1 cut(s) 631
AgsI TTSAA 5 cut(s) 73, 494, 557, 644, 865
AjnI CCWGG 2 cut(s) 76, 302
AluBI AGCT 3 cut(s) 160, 467, 846
AluI AGCT 3 cut(s) 160, 467, 846
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 3 cut(s) 66, 125, 138
Ama87I CYCGRG 2 cut(s) 239, 841
AoxI GGCC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 124, 268
AsiGI ACCGGT 1 cut(s) 631
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 2 cut(s) 524, 740
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 2 cut(s) 239, 841
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 848
BauI CACGAG 1 cut(s) 847
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 848
BccI CCATC 2 cut(s) 494, 653
BciT130I CCWGG 2 cut(s) 78, 304
BcnI CCSGG 2 cut(s) 524, 740
BcoDI GTCTC 1 cut(s) 720
BfaI CTAG 1 cut(s) 821
BfmI CTRYAG 4 cut(s) 145, 462, 535, 828
BfoI RGCGCY 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 4 cut(s) 78, 304, 524, 740
BmeT110I CYCGRG 2 cut(s) 239, 841
BmiI GGNNCC 2 cut(s) 132, 532
BmrFI CCNGG 4 cut(s) 78, 304, 524, 740
BmsI GCATC 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpmI CTGGAG 1 cut(s) 286
BpuMI CCSGG 2 cut(s) 524, 740
Bsa29I ATCGAT 2 cut(s) 510, 789
BsaJI CCNNGG 2 cut(s) 250, 613
BsaWI WCCGGW 1 cut(s) 631
BsaXI ACNNNNNCTCC 2 cut(s) 717, 747
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 523, 619, 810
Bse118I RCCGGY 2 cut(s) 564, 631
Bse1I ACTGG 3 cut(s) 357, 710, 859
BseBI CCWGG 2 cut(s) 78, 304
BseCI ATCGAT 2 cut(s) 510, 789
BseDI CCNNGG 2 cut(s) 250, 613
BseLI CCNNNNNNNGG 4 cut(s) 83, 523, 619, 810
BseMII CTCAG 3 cut(s) 233, 684, 797
BseNI ACTGG 3 cut(s) 357, 710, 859
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 569
BshFI GGCC 1 cut(s) 564
BshTI ACCGGT 1 cut(s) 631
BshVI ATCGAT 2 cut(s) 510, 789
BsiEI CGRYCG 1 cut(s) 569
BsiHKAI GWGCWC 1 cut(s) 848
BsiHKCI CYCGRG 2 cut(s) 239, 841
BsiSI CCGG 5 cut(s) 524, 565, 632, 723, 739
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 4 cut(s) 83, 523, 619, 810
BsmAI GTCTC 1 cut(s) 720
BsmBI CGTCTC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 1 cut(s) 564
BsoBI CYCGRG 2 cut(s) 239, 841
Bsp1286I GDGCHC 1 cut(s) 848
Bsp1407I TGTACA 1 cut(s) 794
Bsp143I GATC 6 cut(s) 19, 58, 130, 141, 412, 786
Bsp19I CCATGG 1 cut(s) 613
BspACI CCGC 4 cut(s) 177, 697, 810, 868
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 3 cut(s) 232, 685, 796
BspDI ATCGAT 2 cut(s) 510, 789
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 132, 532
BspPI GGATC 3 cut(s) 66, 125, 138
BsrBI CCGCTC 1 cut(s) 697
BsrFI RCCGGY 2 cut(s) 564, 631
BsrGI TGTACA 1 cut(s) 794
BsrI ACTGG 3 cut(s) 357, 710, 859
BssAI RCCGGY 2 cut(s) 564, 631
BssECI CCNNGG 2 cut(s) 250, 613
BssMI GATC 6 cut(s) 19, 58, 130, 141, 412, 786
BssSI CACGAG 1 cut(s) 847
BssT1I CCWWGG 2 cut(s) 250, 613
Bst2BI CACGAG 1 cut(s) 847
Bst2UI CCWGG 2 cut(s) 78, 304
BstAUI TGTACA 1 cut(s) 794
BstDEI CTNAG 3 cut(s) 219, 693, 783
BstDSI CCRYGG 1 cut(s) 613
BstENI CCTNNNNNAGG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 22, 61, 133, 144, 415, 789
BstMAI GTCTC 1 cut(s) 720
BstMBI GATC 6 cut(s) 19, 58, 130, 141, 412, 786
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 3 cut(s) 107, 188, 570
BstNI CCWGG 2 cut(s) 78, 304
BstSCI CCNGG 4 cut(s) 76, 302, 522, 738
BstSFI CTRYAG 4 cut(s) 145, 462, 535, 828
BstUI CGCG 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 130, 141
BstYI RGATCY 2 cut(s) 130, 141
Bsu15I ATCGAT 2 cut(s) 510, 789
BsuRI GGCC 1 cut(s) 564
BsuTUI ATCGAT 2 cut(s) 510, 789
BtgI CCRYGG 1 cut(s) 613
BtsIMutI CAGTG 2 cut(s) 364, 438
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 2 cut(s) 564, 631
ClaI ATCGAT 2 cut(s) 510, 789
Csp6I GTAC 2 cut(s) 795, 838
CspAI ACCGGT 1 cut(s) 631
CspCI CAANNNNNGTGG 2 cut(s) 467, 502
CviAII CATG 1 cut(s) 614
CviQI GTAC 2 cut(s) 795, 838
DdeI CTNAG 3 cut(s) 219, 693, 783
DpnI GATC 6 cut(s) 21, 60, 132, 143, 414, 788
DpnII GATC 6 cut(s) 19, 58, 130, 141, 412, 786
DrdI GACNNNNNNGTC 2 cut(s) 734, 830
DseDI GACNNNNNNGTC 2 cut(s) 734, 830
Ecl136II GAGCTC 1 cut(s) 846
Eco130I CCWWGG 2 cut(s) 250, 613
Eco24I GRGCYC 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 2 cut(s) 532, 675
Eco88I CYCGRG 2 cut(s) 239, 841
EcoICRI GAGCTC 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 76, 302
EcoT14I CCWWGG 2 cut(s) 250, 613
EcoT38I GRGCYC 1 cut(s) 848
ErhI CCWWGG 2 cut(s) 250, 613
Esp3I CGTCTC 1 cut(s) 720
FaeI CATG 1 cut(s) 617
FaiI YATR 7 cut(s) 113, 291, 340, 432, 615, 686, 801
FaqI GGGAC 1 cut(s) 635
FatI CATG 1 cut(s) 613
FauI CCCGC 2 cut(s) 690, 803
FblI GTMKAC 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 178
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 821
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 564
HapII CCGG 5 cut(s) 524, 565, 632, 723, 739
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 617
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 2 cut(s) 587, 690
HindII GTYRAC 2 cut(s) 587, 690
HinfI GANTC 8 cut(s) 150, 206, 427, 446, 709, 743, 781, 824
HpaI GTTAAC 1 cut(s) 690
HpaII CCGG 5 cut(s) 524, 565, 632, 723, 739
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 4 cut(s) 587, 690, 797, 838
Hpy188I TCNGA 4 cut(s) 19, 63, 222, 786
Hpy188III TCNNGA 5 cut(s) 70, 239, 241, 649, 821
Hpy8I GTNNAC 4 cut(s) 587, 690, 797, 838
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 188, 570
HpyF3I CTNAG 3 cut(s) 219, 693, 783
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 1 cut(s) 617
HspAI GCGC 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 690
Kzo9I GATC 6 cut(s) 19, 58, 130, 141, 412, 786
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 821
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 1 cut(s) 596
MalI GATC 6 cut(s) 21, 60, 132, 143, 414, 788
MbiI CCGCTC 1 cut(s) 697
MboI GATC 6 cut(s) 19, 58, 130, 141, 412, 786
MboII GAAGA 6 cut(s) 14, 30, 33, 450, 538, 668
MflI RGATCY 2 cut(s) 130, 141
MhlI GDGCHC 1 cut(s) 848
MluCI AATT 5 cut(s) 114, 124, 223, 268, 557
MlyI GAGTC 3 cut(s) 436, 775, 818
MmeI TCCRAC 2 cut(s) 499, 508
MnlI CCTC 3 cut(s) 91, 228, 682
MseI TTAA 5 cut(s) 309, 627, 689, 768, 874
MslI CAYNNNNRTG 2 cut(s) 288, 679
MspI CCGG 5 cut(s) 524, 565, 632, 723, 739
MspR9I CCNGG 4 cut(s) 78, 304, 524, 740
MvaI CCWGG 2 cut(s) 78, 304
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 107, 188, 570
NciI CCSGG 2 cut(s) 524, 740
NcoI CCATGG 1 cut(s) 613
NdeII GATC 6 cut(s) 19, 58, 130, 141, 412, 786
NlaIII CATG 1 cut(s) 617
NlaIV GGNNCC 2 cut(s) 132, 532
PaeR7I CTCGAG 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 5 cut(s) 150, 206, 446, 709, 743
PfoI TCCNGGA 2 cut(s) 302, 738
PinAI ACCGGT 1 cut(s) 631
PkrI GCNGC 1 cut(s) 179
PleI GAGTC 3 cut(s) 435, 775, 818
PpsI GAGTC 3 cut(s) 435, 775, 818
Psp124BI GAGCTC 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 76, 302
PspGI CCWGG 2 cut(s) 76, 302
PspN4I GGNNCC 2 cut(s) 132, 532
PsuI RGATCY 2 cut(s) 130, 141
RsaI GTAC 2 cut(s) 796, 839
RsaNI GTAC 2 cut(s) 795, 838
RseI CAYNNNNRTG 2 cut(s) 288, 679
SacI GAGCTC 1 cut(s) 848
SalI GTCGAC 1 cut(s) 585
SaqAI TTAA 5 cut(s) 309, 627, 689, 768, 874
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 6 cut(s) 19, 58, 130, 141, 412, 786
SchI GAGTC 3 cut(s) 436, 775, 818
ScrFI CCNGG 4 cut(s) 78, 304, 524, 740
SduI GDGCHC 1 cut(s) 848
SetI ASST 8 cut(s) 162, 288, 339, 469, 536, 732, 755, 848
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 4 cut(s) 145, 462, 535, 828
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 288, 679
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 114, 124, 223, 268, 557
SsiI CCGC 4 cut(s) 177, 697, 810, 868
SspI AATATT 1 cut(s) 668
SspMI CTAG 1 cut(s) 821
SstI GAGCTC 1 cut(s) 848
StyD4I CCNGG 4 cut(s) 76, 302, 522, 738
StyI CCWWGG 2 cut(s) 250, 613
TaiI ACGT 1 cut(s) 732
TasI AATT 5 cut(s) 114, 124, 223, 268, 557
TatI WGTACW 1 cut(s) 794
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 5 cut(s) 150, 206, 446, 709, 743
Tru1I TTAA 5 cut(s) 309, 627, 689, 768, 874
Tru9I TTAA 5 cut(s) 309, 627, 689, 768, 874
TscAI CASTG 2 cut(s) 364, 445
TspDTI ATGAA 3 cut(s) 33, 459, 701
TspRI CASTG 2 cut(s) 364, 445
XagI CCTNNNNNAGG 1 cut(s) 81
XapI RAATTY 2 cut(s) 124, 268
XbaI TCTAGA 1 cut(s) 820
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 586
XspI CTAG 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.