Prupe.5G091600_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013870
Physical Location & Seq
Reverse (-)
10220439 .. 10223389
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G091600.1

Sequence Viewer

Length: 864 bp
ATGGGTGCTAGTTTCTCTGCTTGCAAATCAGACCCAGTTGGGGCTTTGCCTTTGCAATCAAAACCCAGTCTTGGCGATTTGCCGGAGAGCTGCGCGGCGCTGATTCTGGGTTATTTGGACCCACCGGAGATTTGCAAATTGGCGAAGCTCAATCGGGCTTTTCGTGGAGCTTCTTGGGCTGACTTCATTTGGGAATCGAAATTGCCTTCCAATTATCAAACTATTGTTAGAAAAGTGTTCGGTGATGGTTTGGAAAATTTGGGTAAAAGAGATGTTTATACGAGGCTTTGTCAGCCTAATTCTTTCGATGATGGTACCAAGACGGTTTGGCTGGATAAAAGTACAGGATCTGTTTGCTTGTCGATTTCTTCAAAGGGATTAGCAATCACTGGCATTGACGATCGAAGATATTGGAATCATATTCAAACTGAAGAATCTAGATTTTGCAGCGTTGCATATCTTCAGCAAATATGGTGGTTAGAAGTCGATGGGGAGGTTGAGTTCCCGTTTCCAGCAGGGACATACAGCCTATTCTTTAGGCTGCAGCTGGGACGGTCTTCGCAGAAGAGGTTTGGTCGCCGAATTTGCAATACCGAGCATGTCCATGGTTGGGACATAAAACCAGTGAGGTTTCAGCTATGGACTTCAGAAGGTCACTATGCCTCGTCCCAATGCTTTTTAACTGAACCTGGAAAATGGAACTACTACCATGTTGGGGATTTTGTTGTGGAGAACCCCAATGCATCAACAAAGATTAAACTCTCTATGACCCAGATTGATTGCACCCACACCAAAGGTGGTCTCTGTTTAGACTCTGTACTTATATACCCTAGTGAATTTCGAGAAAGGCTAAAGCATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

288

Amino Acids

32.54

Weight (kDa)

7.99

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 95
AclWI GGATC 1 cut(s) 355
AcsI RAATTY 3 cut(s) 256, 582, 836
AcuI CTGAAG 3 cut(s) 446, 450, 630
AfaI GTAC 3 cut(s) 316, 343, 819
AfiI CCNNNNNNNGG 4 cut(s) 40, 71, 610, 715
AgsI TTSAA 2 cut(s) 372, 425
AjnI CCWGG 1 cut(s) 688
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 5 cut(s) 90, 148, 170, 547, 637
AluI AGCT 5 cut(s) 90, 148, 170, 547, 637
Alw26I GTCTC 1 cut(s) 806
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 350
ApeKI GCWGC 4 cut(s) 90, 447, 541, 544
ApoI RAATTY 3 cut(s) 256, 582, 836
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 95, 100
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 549
BbvI GCAGC 4 cut(s) 77, 459, 528, 556
BccI CCATC 3 cut(s) 239, 305, 482
BciT130I CCWGG 1 cut(s) 690
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 3 cut(s) 9, 438, 831
BfmI CTRYAG 1 cut(s) 542
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 5 cut(s) 91, 96, 448, 542, 545
BlsI GCNGC 5 cut(s) 92, 97, 449, 543, 546
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 120, 316
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 2 cut(s) 29, 60
BmsI GCATC 1 cut(s) 752
BmuI ACTGGG 2 cut(s) 29, 60
BpiI GAAGAC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 71, 610, 715
Bse1I ACTGG 4 cut(s) 35, 66, 394, 623
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 604
BseLI CCNNNNNNNGG 4 cut(s) 40, 71, 610, 715
BseNI ACTGG 4 cut(s) 35, 66, 394, 623
BseXI GCAGC 4 cut(s) 77, 459, 528, 556
BseYI CCCAGC 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 403
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 2 cut(s) 83, 125
BslFI GGGAC 4 cut(s) 532, 564, 626, 652
BslI CCNNNNNNNGG 4 cut(s) 40, 71, 610, 715
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 4 cut(s) 532, 564, 626, 652
Bso31I GGTCTC 1 cut(s) 806
Bsp143I GATC 2 cut(s) 347, 400
Bsp19I CCATGG 1 cut(s) 604
BspACI CCGC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 120, 316
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 806
BsrI ACTGG 4 cut(s) 35, 66, 394, 623
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 2 cut(s) 347, 400
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 325, 555
Bst6I CTCTTC 1 cut(s) 560
BstC8I GCNNGC 1 cut(s) 22
BstDSI CCRYGG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 95, 100
BstKTI GATC 2 cut(s) 350, 403
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 2 cut(s) 347, 400
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 3 cut(s) 176, 292, 585
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 688
BstSFI CTRYAG 1 cut(s) 542
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 4 cut(s) 77, 459, 528, 556
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 387, 630
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 2 cut(s) 95, 100
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 315, 342, 818
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 3 cut(s) 599, 605, 710
CviQI GTAC 3 cut(s) 315, 342, 818
DpnI GATC 2 cut(s) 349, 402
DpnII GATC 2 cut(s) 347, 400
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco130I CCWWGG 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 3 cut(s) 446, 450, 630
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 3 cut(s) 602, 608, 713
FaqI GGGAC 4 cut(s) 532, 564, 626, 652
FatI CATG 3 cut(s) 598, 604, 709
Fnu4HI GCNGC 5 cut(s) 91, 96, 448, 542, 545
Fsp4HI GCNGC 5 cut(s) 91, 96, 448, 542, 545
FspBI CTAG 3 cut(s) 9, 438, 831
GlaI GCGC 2 cut(s) 94, 99
GluI GCNGC 5 cut(s) 91, 96, 448, 542, 545
GsaI CCCAGC 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 101
HapII CCGG 2 cut(s) 83, 125
HhaI GCGC 2 cut(s) 95, 100
Hin1II CATG 3 cut(s) 602, 608, 713
Hin6I GCGC 2 cut(s) 93, 98
HinP1I GCGC 2 cut(s) 93, 98
HinfI GANTC 5 cut(s) 103, 194, 415, 434, 812
HpaII CCGG 2 cut(s) 83, 125
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 31, 649
Hpy188III TCNNGA 2 cut(s) 438, 842
HpyAV CCTTC 2 cut(s) 216, 644
HpyCH4III ACNGT 2 cut(s) 325, 555
HpyCH4V TGCA 9 cut(s) 24, 55, 135, 447, 455, 544, 588, 743, 783
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 292, 585
Hsp92II CATG 3 cut(s) 602, 608, 713
HspAI GCGC 2 cut(s) 93, 98
KpnI GGTACC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 347, 400
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 4 cut(s) 77, 459, 528, 556
LweI GCATC 1 cut(s) 752
MaeI CTAG 3 cut(s) 9, 438, 831
MaeIII GTNAC 1 cut(s) 653
MalI GATC 2 cut(s) 349, 402
MboI GATC 2 cut(s) 347, 400
MboII GAAGA 6 cut(s) 360, 417, 443, 452, 549, 577
MflI RGATCY 1 cut(s) 347
MluCI AATT 7 cut(s) 137, 200, 211, 256, 298, 582, 836
MlyI GAGTC 1 cut(s) 806
MnlI CCTC 5 cut(s) 276, 487, 561, 621, 673
Mph1103I ATGCAT 1 cut(s) 745
MseI TTAA 3 cut(s) 680, 756, 862
MslI CAYNNNNRTG 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 547
MspI CCGG 2 cut(s) 83, 125
MspR9I CCNGG 1 cut(s) 690
MteI GCGCNGCGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 176, 292, 585
NcoI CCATGG 1 cut(s) 604
NdeII GATC 2 cut(s) 347, 400
NlaIII CATG 3 cut(s) 602, 608, 713
NlaIV GGNNCC 2 cut(s) 120, 316
NmuCI GTSAC 1 cut(s) 653
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 4 cut(s) 103, 194, 415, 434
PkrI GCNGC 5 cut(s) 92, 97, 449, 543, 546
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 2 cut(s) 120, 316
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 347
PvuI CGATCG 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 3 cut(s) 316, 343, 819
RsaNI GTAC 3 cut(s) 315, 342, 818
RseI CAYNNNNRTG 1 cut(s) 603
SaqAI TTAA 3 cut(s) 680, 756, 862
SatI GCNGC 5 cut(s) 91, 96, 448, 542, 545
Sau3AI GATC 2 cut(s) 347, 400
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 690
SfaNI GCATC 1 cut(s) 752
SfcI CTRYAG 1 cut(s) 542
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 603
Sse9I AATT 7 cut(s) 137, 200, 211, 256, 298, 582, 836
SsiI CCGC 1 cut(s) 95
SspMI CTAG 3 cut(s) 9, 438, 831
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 325, 555
TaqI TCGA 6 cut(s) 197, 306, 362, 403, 486, 841
TasI AATT 7 cut(s) 137, 200, 211, 256, 298, 582, 836
TatI WGTACW 2 cut(s) 341, 817
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 4 cut(s) 103, 194, 415, 434
Tru1I TTAA 3 cut(s) 680, 756, 862
Tru9I TTAA 3 cut(s) 680, 756, 862
TscAI CASTG 2 cut(s) 394, 630
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 4 cut(s) 90, 447, 541, 544
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 1 cut(s) 175
TspRI CASTG 2 cut(s) 394, 630
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 3 cut(s) 256, 582, 836
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 1 cut(s) 602
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
XspI CTAG 3 cut(s) 9, 438, 831
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.