AT1G63090

Phloem protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013870
Physical Location & Seq
Reverse (-)
23390968 .. 23392873
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63090.1

Sequence Viewer

Length: 870 bp
ATGGGTTCAGGGTTCTCTCTGTTTCAAAAGAATTTATCGTCTTGTTATGGAGATCGAGATCTGTTGCAGCCTGGTTTAGGAGATTTGCCTGAAAGTTGTGTGGCTTTGATTCTCCAGAATTTGGATCCCGTTGAGATCTGTAGATTCTCCAAGCTAAACACGGCTTTTCATGGCGCTTCTTGGGCTGATTTCGTTTGGGAATCGAAACTTCCTCCAGATTATAAATTGATTCTCGAGAAAATCCTTGGTAGTTTCCCTGATAATTTGCGTAAAAGAGACATCTTTACTTTTCTCTCTCGAGTTAATTCCTTCGACGAGGGCAACAAGAAAGCTTGGGTAGATAAACGAACAGGTGGGCTCTGTTTATGCACATCAGCCAAGGGCTTATCCATAACCGGAATTGATGATCGGAGATACTGGAGTCATATTCCGTCTGATGATTCTCGATTTGCTTCAGTAGCTTATGTTCAACAGATCTGGTGGTTTCAAGTTGATGGAGAAATTGATTTCCCATTTCCAGCTGGAACCTACAGTGTTTACTTCAGGCTTCAGCTAGGCAAACCAGGCAAGCGGTTTGGTTGGAAGGTTGTTGACACCGAACAGGTTCATGGCTGGAACATTAAACCTGTTCGTTTTCAACTCTCGACTGAAGATGGTCAACATTCTTCATCTCAATGTATGTTAACCGAAGCAGGAAACTGGAGTCATTACCATGCTGGAGACTTTGTGGTCGGTAAATCGAAAAGTTCATCGACGAAGATTAAGTTCTCGATGACTCAGATTGATTGCACGCATACTAAAGGCGGGTTATGTGTAGATTCTGTAGTTGTGTATCCGAGCTCGTGTAAGGACCGGTTGATGCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

289

Amino Acids

32.55

Weight (kDa)

8.02

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 121 - 279 9.6e-39 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AasI GACNNNNNNGTC 1 cut(s) 728
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 2 cut(s) 571, 804
AclWI GGATC 2 cut(s) 119, 132
AcsI RAATTY 2 cut(s) 31, 118
AcuI CTGAAG 4 cut(s) 438, 526, 533, 669
AfiI CCNNNNNNNGG 2 cut(s) 77, 121
AgeI ACCGGT 1 cut(s) 852
AgsI TTSAA 4 cut(s) 26, 470, 488, 638
AjnI CCWGG 2 cut(s) 70, 562
AluBI AGCT 6 cut(s) 154, 332, 461, 521, 553, 840
AluI AGCT 6 cut(s) 154, 332, 461, 521, 553, 840
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 2 cut(s) 270, 714
AlwI GGATC 2 cut(s) 119, 132
Ama87I CYCGRG 2 cut(s) 233, 297
ApeKI GCWGC 1 cut(s) 67
ApoI RAATTY 2 cut(s) 31, 118
AsiGI ACCGGT 1 cut(s) 852
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 850
AvaI CYCGRG 2 cut(s) 233, 297
AvaII GGWCC 1 cut(s) 850
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 2 cut(s) 360, 842
BauI CACGAG 1 cut(s) 841
Bbv12I GWGCWC 1 cut(s) 842
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 488, 647
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 72, 564
BciVI GTATCC 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 270, 714
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 3 cut(s) 139, 529, 822
BfoI RGCGCY 1 cut(s) 177
BfuI GTATCC 1 cut(s) 843
BglII AGATCT 3 cut(s) 58, 135, 474
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 72, 564
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 2 cut(s) 233, 297
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 2 cut(s) 126, 526
BmrFI CCNGG 2 cut(s) 72, 564
BmsI GCATC 1 cut(s) 849
BpmI CTGGAG 5 cut(s) 98, 198, 439, 721, 738
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 244, 378
BsaWI WCCGGW 2 cut(s) 395, 852
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 121
Bse118I RCCGGY 1 cut(s) 852
Bse1I ACTGG 2 cut(s) 422, 704
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 2 cut(s) 72, 564
BseDI CCNNGG 2 cut(s) 244, 378
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 2 cut(s) 77, 121
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 2 cut(s) 422, 704
BseXI GCAGC 1 cut(s) 79
BshTI ACCGGT 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 842
BsiHKCI CYCGRG 2 cut(s) 233, 297
BsiSI CCGG 2 cut(s) 396, 853
BslI CCNNNNNNNGG 2 cut(s) 77, 121
BsmAI GTCTC 2 cut(s) 270, 714
BsoBI CYCGRG 2 cut(s) 233, 297
Bsp1286I GDGCHC 2 cut(s) 360, 842
Bsp143I GATC 6 cut(s) 52, 58, 124, 135, 406, 474
BspACI CCGC 2 cut(s) 571, 804
BspCNI CTCAG 1 cut(s) 790
BspLI GGNNCC 2 cut(s) 126, 526
BspPI GGATC 2 cut(s) 119, 132
BsrFI RCCGGY 1 cut(s) 852
BsrI ACTGG 2 cut(s) 422, 704
BssAI RCCGGY 1 cut(s) 852
BssECI CCNNGG 2 cut(s) 244, 378
BssMI GATC 6 cut(s) 52, 58, 124, 135, 406, 474
BssSI CACGAG 1 cut(s) 841
BssT1I CCWWGG 2 cut(s) 244, 378
Bst2BI CACGAG 1 cut(s) 841
Bst2UI CCWGG 2 cut(s) 72, 564
Bst4CI ACNGT 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 569, 791
BstDEI CTNAG 1 cut(s) 777
BstENI CCTNNNNNAGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 6 cut(s) 55, 61, 127, 138, 409, 477
BstMAI GTCTC 2 cut(s) 270, 714
BstMBI GATC 6 cut(s) 52, 58, 124, 135, 406, 474
BstMWI GCNNNNNNNGC 3 cut(s) 182, 458, 564
BstNI CCWGG 2 cut(s) 72, 564
BstSCI CCNGG 2 cut(s) 70, 562
BstSFI CTRYAG 3 cut(s) 139, 529, 822
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 4 cut(s) 58, 124, 135, 474
BstYI RGATCY 4 cut(s) 58, 124, 135, 474
BsuI GTATCC 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 538
Cac8I GCNNGC 2 cut(s) 569, 791
CfoI GCGC 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 852
Cfr13I GGNCC 1 cut(s) 850
CspAI ACCGGT 1 cut(s) 852
CviAII CATG 3 cut(s) 170, 608, 713
DdeI CTNAG 1 cut(s) 777
DpnI GATC 6 cut(s) 54, 60, 126, 137, 408, 476
DpnII GATC 6 cut(s) 52, 58, 124, 135, 406, 474
DrdI GACNNNNNNGTC 1 cut(s) 728
DseDI GACNNNNNNGTC 1 cut(s) 728
Ecl136II GAGCTC 1 cut(s) 840
Eco130I CCWWGG 2 cut(s) 244, 378
Eco24I GRGCYC 2 cut(s) 360, 842
Eco47I GGWCC 1 cut(s) 850
Eco53kI GAGCTC 1 cut(s) 840
Eco57I CTGAAG 4 cut(s) 438, 526, 533, 669
Eco88I CYCGRG 2 cut(s) 233, 297
EcoICRI GAGCTC 1 cut(s) 840
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 70, 562
EcoT14I CCWWGG 2 cut(s) 244, 378
EcoT38I GRGCYC 2 cut(s) 360, 842
ErhI CCWWGG 2 cut(s) 244, 378
FaeI CATG 3 cut(s) 173, 611, 716
FatI CATG 3 cut(s) 169, 607, 712
FauI CCCGC 1 cut(s) 797
Fnu4HI GCNGC 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 360, 842
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 554
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 5 cut(s) 98, 198, 439, 721, 738
HaeII RGCGCY 1 cut(s) 177
HapII CCGG 2 cut(s) 396, 853
HhaI GCGC 1 cut(s) 176
Hin1II CATG 3 cut(s) 173, 611, 716
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 3 cut(s) 592, 659, 684
HindII GTYRAC 3 cut(s) 592, 659, 684
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 9 cut(s) 109, 144, 200, 229, 421, 440, 703, 775, 818
HpaI GTTAAC 1 cut(s) 684
HpaII CCGG 2 cut(s) 396, 853
Hpy166II GTNNAC 4 cut(s) 538, 592, 659, 684
Hpy188I TCNGA 4 cut(s) 411, 436, 780, 837
Hpy188III TCNNGA 9 cut(s) 56, 115, 215, 233, 235, 297, 444, 643, 769
Hpy8I GTNNAC 4 cut(s) 538, 592, 659, 684
Hpy99I CGWCG 2 cut(s) 317, 757
HpyAV CCTTC 2 cut(s) 319, 577
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 4 cut(s) 67, 369, 789, 862
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 458, 564
HpyF3I CTNAG 1 cut(s) 777
Hsp92II CATG 3 cut(s) 173, 611, 716
HspAI GCGC 1 cut(s) 174
KspAI GTTAAC 1 cut(s) 684
Kzo9I GATC 6 cut(s) 52, 58, 124, 135, 406, 474
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 849
MaeI CTAG 1 cut(s) 554
MalI GATC 6 cut(s) 54, 60, 126, 137, 408, 476
MboI GATC 6 cut(s) 52, 58, 124, 135, 406, 474
MboII GAAGA 3 cut(s) 657, 662, 769
MflI RGATCY 4 cut(s) 58, 124, 135, 474
MhlI GDGCHC 2 cut(s) 360, 842
MluCI AATT 7 cut(s) 31, 118, 224, 262, 304, 399, 501
MlyI GAGTC 3 cut(s) 430, 712, 769
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 2 cut(s) 222, 310
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 5 cut(s) 303, 621, 683, 762, 868
MslI CAYNNNNRTG 2 cut(s) 673, 711
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 2 cut(s) 396, 853
MspR9I CCNGG 2 cut(s) 72, 564
MvaI CCWGG 2 cut(s) 72, 564
MwoI GCNNNNNNNGC 3 cut(s) 182, 458, 564
NdeII GATC 6 cut(s) 52, 58, 124, 135, 406, 474
NlaIII CATG 3 cut(s) 173, 611, 716
NlaIV GGNNCC 2 cut(s) 126, 526
PaeR7I CTCGAG 2 cut(s) 233, 297
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 6 cut(s) 109, 144, 200, 229, 440, 818
PflMI CCANNNNNTGG 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 852
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 3 cut(s) 429, 711, 769
PpsI GAGTC 3 cut(s) 429, 711, 769
PsiI TTATAA 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 70, 562
PspGI CCWGG 2 cut(s) 70, 562
PspN4I GGNNCC 2 cut(s) 126, 526
PspPI GGNCC 1 cut(s) 850
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PsuI RGATCY 4 cut(s) 58, 124, 135, 474
PvuII CAGCTG 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 673, 711
SacI GAGCTC 1 cut(s) 842
SaqAI TTAA 5 cut(s) 303, 621, 683, 762, 868
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 6 cut(s) 52, 58, 124, 135, 406, 474
Sau96I GGNCC 1 cut(s) 850
SchI GAGTC 3 cut(s) 430, 712, 769
ScrFI CCNGG 2 cut(s) 72, 564
SduI GDGCHC 2 cut(s) 360, 842
SfaNI GCATC 1 cut(s) 849
SfcI CTRYAG 3 cut(s) 139, 529, 822
Sfr274I CTCGAG 2 cut(s) 233, 297
SinI GGWCC 1 cut(s) 850
SlaI CTCGAG 2 cut(s) 233, 297
SmiMI CAYNNNNRTG 2 cut(s) 673, 711
SmlI CTYRAG 2 cut(s) 233, 297
SmoI CTYRAG 2 cut(s) 233, 297
Sse9I AATT 7 cut(s) 31, 118, 224, 262, 304, 399, 501
SsiI CCGC 2 cut(s) 571, 804
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 842
StyD4I CCNGG 2 cut(s) 70, 562
StyI CCWWGG 2 cut(s) 244, 378
TaaI ACNGT 1 cut(s) 533
TasI AATT 7 cut(s) 31, 118, 224, 262, 304, 399, 501
TfiI GAWTC 6 cut(s) 109, 144, 200, 229, 440, 818
Tru1I TTAA 5 cut(s) 303, 621, 683, 762, 868
Tru9I TTAA 5 cut(s) 303, 621, 683, 762, 868
TscAI CASTG 1 cut(s) 538
TseI GCWGC 1 cut(s) 67
TspDTI ATGAA 4 cut(s) 158, 596, 657, 738
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 538
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 850
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 2 cut(s) 31, 118
XhoI CTCGAG 2 cut(s) 233, 297
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.