Rh7BG180200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013870
Physical Location & Seq
Forward (+)
14288546 .. 14290228
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG180200.1

Sequence Viewer

Length: 870 bp
ATGGGTGCTGGGTTCTCGTTCTTTAAGGCGGACCCAGTTGGGTCTTTGCCTCTGCAATCAAAGCCAAAGCCGGGTCTTGGGGATTTGCCGGAGAGCTGTGCGGCGGAGATTATGAGGTACTTGGACCCGCCGGAGATTTGCAAGCTGGCCAAGATGAATCGGGCTTTTCGTGGGGCTTCCTGGGCCGATTTTATATGGGAGTCGAAATTGCCTAGTAATTATCAGATTATTGTGAGCAAAGTGTTTGGTGATGGGTTGGGAAATTTGGGGAAAAGAGATGTGTATGAGAGGCTTTGTAGGCCTAACCCGTTTGATGGGGGAGCCAAGACGGTTTGGCTGGATAAGCGCACAGGATCTGCTTGCTTGTCCATTTCGTCAAAGGGATTAGCAATCACTGGAATCGATGATCGAAGATATTGGAATCATATTCCTACCGAAGAATCTAGATTTAGAACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAGGTAGATGGGGAGGTCGAGTTCCCATTTCCAGCCGGGAAATACAGCTTGTATTTTAGGCTGCAGCTGGGACGCTCTTCTCAGAAGAGGTTTGGTCGCCGTGTTTGCAACACTGAGCATGTCCATGGCTGGGACAGAAAACCAGTGAGGTTCCAACTATGGACTTCAGAAGGTCAGTCTGCCTCATCCGAGTGCTTTTTAACTGAACCTGGGAAATGGAATCACTACCATGCTGGGGACTTTGTCGTGGAAAACCCAAATGCAGCAACAAAGATTAAACTCTCGATGACCCAGATTGATTGTACACACACCAAAGGCGGTCTCTGTTTAGACTCTGTAGTTATATACCCAAGTGAATTTAGAGAAAGGTTGAAGCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

289

Amino Acids

32.84

Weight (kDa)

8.94

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 120 - 279 2.2e-39 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 29, 101, 104, 128, 804
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 2 cut(s) 262, 842
AcuI CTGAAG 2 cut(s) 452, 636
AfaI GTAC 2 cut(s) 119, 790
AfiI CCNNNNNNNGG 5 cut(s) 71, 77, 314, 616, 721
AgsI TTSAA 1 cut(s) 859
AjnI CCWGG 2 cut(s) 179, 694
AloI GAACNNNNNNTCC 2 cut(s) 491, 523
AluBI AGCT 4 cut(s) 96, 145, 534, 553
AluI AGCT 4 cut(s) 96, 145, 534, 553
Alw26I GTCTC 1 cut(s) 812
AlwI GGATC 1 cut(s) 361
AlwNI CAGNNNCTG 1 cut(s) 356
AoxI GGCC 3 cut(s) 147, 183, 299
ApeKI GCWGC 3 cut(s) 547, 550, 749
ApoI RAATTY 2 cut(s) 262, 842
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 31, 124, 183
AsuC2I CCSGG 2 cut(s) 72, 523
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 31, 124
BalI TGGCCA 1 cut(s) 149
BbvI GCAGC 3 cut(s) 534, 562, 761
BccI CCATC 3 cut(s) 245, 308, 488
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 2 cut(s) 181, 696
BcnI CCSGG 2 cut(s) 72, 523
BcoDI GTCTC 1 cut(s) 812
BfaI CTAG 2 cut(s) 213, 444
BfmI CTRYAG 2 cut(s) 548, 822
BisI GCNGC 4 cut(s) 102, 548, 551, 750
BlsI GCNGC 4 cut(s) 103, 549, 552, 751
Bme1390I CCNGG 4 cut(s) 72, 181, 523, 696
Bme18I GGWCC 2 cut(s) 31, 124
BmgT120I GGNCC 3 cut(s) 31, 124, 183
BmiI GGNNCC 4 cut(s) 33, 126, 322, 638
BmrFI CCNGG 4 cut(s) 72, 181, 523, 696
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 72, 523
Bsa29I ATCGAT 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 812
BsaJI CCNNGG 3 cut(s) 180, 610, 695
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 77, 314, 616, 721
Bse1I ACTGG 3 cut(s) 35, 400, 629
BseBI CCWGG 2 cut(s) 181, 696
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 180, 610, 695
BseGI GGATG 1 cut(s) 671
BseLI CCNNNNNNNGG 5 cut(s) 71, 77, 314, 616, 721
BseMII CTCAG 2 cut(s) 581, 591
BseNI ACTGG 3 cut(s) 35, 400, 629
BseXI GCAGC 3 cut(s) 534, 562, 761
BseYI CCCAGC 4 cut(s) 8, 553, 615, 719
BshFI GGCC 3 cut(s) 149, 185, 301
BshVI ATCGAT 1 cut(s) 402
BsiSI CCGG 4 cut(s) 71, 89, 131, 522
BslFI GGGAC 3 cut(s) 570, 632, 737
BslI CCNNNNNNNGG 5 cut(s) 71, 77, 314, 616, 721
BsmAI GTCTC 1 cut(s) 812
BsmFI GGGAC 3 cut(s) 570, 632, 737
BsnI GGCC 3 cut(s) 149, 185, 301
Bso31I GGTCTC 1 cut(s) 812
Bsp1407I TGTACA 1 cut(s) 788
Bsp143I GATC 2 cut(s) 353, 406
Bsp19I CCATGG 1 cut(s) 610
BspACI CCGC 5 cut(s) 29, 101, 104, 128, 804
BspANI GGCC 3 cut(s) 149, 185, 301
BspCNI CTCAG 2 cut(s) 580, 592
BspDI ATCGAT 1 cut(s) 402
BspLI GGNNCC 4 cut(s) 33, 126, 322, 638
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 812
BsrGI TGTACA 1 cut(s) 788
BsrI ACTGG 3 cut(s) 35, 400, 629
BssECI CCNNGG 3 cut(s) 180, 610, 695
BssMI GATC 2 cut(s) 353, 406
BssT1I CCWWGG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 181, 696
Bst4CI ACNGT 2 cut(s) 331, 457
Bst6I CTCTTC 2 cut(s) 566, 568
BstAUI TGTACA 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 143, 147, 361
BstDEI CTNAG 2 cut(s) 567, 600
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 671
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 2 cut(s) 356, 409
BstMAI GTCTC 1 cut(s) 812
BstMBI GATC 2 cut(s) 353, 406
BstMWI GCNNNNNNNGC 5 cut(s) 61, 182, 298, 343, 591
BstNI CCWGG 2 cut(s) 181, 696
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 70, 179, 521, 694
BstSFI CTRYAG 2 cut(s) 548, 822
BstV1I GCAGC 3 cut(s) 534, 562, 761
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 3 cut(s) 149, 185, 301
BsuTUI ATCGAT 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 610
BtsCI GGATG 1 cut(s) 671
BtsIMutI CAGTG 3 cut(s) 393, 597, 636
Cac8I GCNNGC 3 cut(s) 143, 147, 361
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 31, 124, 183
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 118, 789
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 3 cut(s) 605, 611, 716
CviQI GTAC 2 cut(s) 118, 789
DdeI CTNAG 2 cut(s) 567, 600
DpnI GATC 2 cut(s) 355, 408
DpnII GATC 2 cut(s) 353, 406
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 566, 568
EarI CTCTTC 2 cut(s) 566, 568
EciI GGCGGA 2 cut(s) 44, 119
Eco130I CCWWGG 1 cut(s) 610
Eco147I AGGCCT 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 31, 124
Eco57I CTGAAG 2 cut(s) 452, 636
EcoRII CCWGG 2 cut(s) 179, 694
EcoT14I CCWWGG 1 cut(s) 610
ErhI CCWWGG 1 cut(s) 610
FaeI CATG 3 cut(s) 608, 614, 719
FaqI GGGAC 3 cut(s) 570, 632, 737
FatI CATG 3 cut(s) 604, 610, 715
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 102, 548, 551, 750
FokI GGATG 1 cut(s) 658
Fsp4HI GCNGC 4 cut(s) 102, 548, 551, 750
FspBI CTAG 2 cut(s) 213, 444
GlaI GCGC 1 cut(s) 347
GluI GCNGC 4 cut(s) 102, 548, 551, 750
GsaI CCCAGC 4 cut(s) 12, 557, 619, 723
HaeIII GGCC 3 cut(s) 149, 185, 301
HapII CCGG 4 cut(s) 71, 89, 131, 522
HgaI GACGC 1 cut(s) 567
HhaI GCGC 1 cut(s) 348
Hin1II CATG 3 cut(s) 608, 614, 719
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 7 cut(s) 157, 200, 399, 421, 440, 706, 818
HpaII CCGG 4 cut(s) 71, 89, 131, 522
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 791
Hpy188I TCNGA 4 cut(s) 225, 570, 655, 676
Hpy188III TCNNGA 2 cut(s) 444, 769
Hpy8I GTNNAC 1 cut(s) 791
HpyAV CCTTC 1 cut(s) 650
HpyCH4III ACNGT 2 cut(s) 331, 457
HpyCH4V TGCA 6 cut(s) 55, 141, 461, 550, 594, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 182, 298, 343, 591
HpyF3I CTNAG 2 cut(s) 567, 600
Hsp92II CATG 3 cut(s) 608, 614, 719
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 2 cut(s) 353, 406
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 3 cut(s) 534, 562, 761
MaeI CTAG 2 cut(s) 213, 444
MalI GATC 2 cut(s) 355, 408
MboI GATC 2 cut(s) 353, 406
MboII GAAGA 5 cut(s) 423, 449, 458, 555, 583
MflI RGATCY 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 4 cut(s) 206, 217, 262, 842
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 2 cut(s) 209, 812
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 8 cut(s) 60, 108, 282, 481, 493, 567, 627, 679
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 24, 686, 762
MslI CAYNNNNRTG 3 cut(s) 609, 676, 714
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 4 cut(s) 71, 89, 131, 522
MspR9I CCNGG 4 cut(s) 72, 181, 523, 696
MvaI CCWGG 2 cut(s) 181, 696
MwoI GCNNNNNNNGC 5 cut(s) 61, 182, 298, 343, 591
NciI CCSGG 2 cut(s) 72, 523
NcoI CCATGG 1 cut(s) 610
NdeII GATC 2 cut(s) 353, 406
NlaIII CATG 3 cut(s) 608, 614, 719
NlaIV GGNNCC 4 cut(s) 33, 126, 322, 638
NspI RCATGY 1 cut(s) 608
PceI AGGCCT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 5 cut(s) 157, 399, 421, 440, 706
PflFI GACNNNGTC 1 cut(s) 728
PkrI GCNGC 4 cut(s) 103, 549, 552, 751
PleI GAGTC 2 cut(s) 208, 812
PpsI GAGTC 2 cut(s) 208, 812
Psp6I CCWGG 2 cut(s) 179, 694
PspFI CCCAGC 4 cut(s) 8, 553, 615, 719
PspGI CCWGG 2 cut(s) 179, 694
PspN4I GGNNCC 4 cut(s) 33, 126, 322, 638
PspPI GGNCC 3 cut(s) 31, 124, 183
PstI CTGCAG 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 553
RsaI GTAC 2 cut(s) 119, 790
RsaNI GTAC 2 cut(s) 118, 789
RseI CAYNNNNRTG 3 cut(s) 609, 676, 714
SapI GCTCTTC 1 cut(s) 568
SaqAI TTAA 3 cut(s) 24, 686, 762
SatI GCNGC 4 cut(s) 102, 548, 551, 750
Sau3AI GATC 2 cut(s) 353, 406
Sau96I GGNCC 3 cut(s) 31, 124, 183
SchI GAGTC 2 cut(s) 209, 812
ScrFI CCNGG 4 cut(s) 72, 181, 523, 696
SfcI CTRYAG 2 cut(s) 548, 822
SinI GGWCC 2 cut(s) 31, 124
SmiMI CAYNNNNRTG 3 cut(s) 609, 676, 714
Sse9I AATT 4 cut(s) 206, 217, 262, 842
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 5 cut(s) 29, 101, 104, 128, 804
SspMI CTAG 2 cut(s) 213, 444
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 70, 179, 521, 694
StyI CCWWGG 1 cut(s) 610
TaaI ACNGT 2 cut(s) 331, 457
TaqI TCGA 5 cut(s) 203, 402, 409, 504, 770
TasI AATT 4 cut(s) 206, 217, 262, 842
TatI WGTACW 1 cut(s) 788
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 5 cut(s) 157, 399, 421, 440, 706
Tru1I TTAA 3 cut(s) 24, 686, 762
Tru9I TTAA 3 cut(s) 24, 686, 762
TscAI CASTG 3 cut(s) 400, 604, 636
TseI GCWGC 3 cut(s) 547, 550, 749
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 3 cut(s) 400, 604, 636
Tth111I GACNNNGTC 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 31, 124
XapI RAATTY 2 cut(s) 262, 842
XbaI TCTAGA 1 cut(s) 443
XceI RCATGY 1 cut(s) 608
XspI CTAG 2 cut(s) 213, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.