RLG00000003810

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013870
Physical Location & Seq
Reverse (-)
52993966 .. 52995828
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003810

Sequence Viewer

Length: 819 bp
ATGGGTGCTGGGTTCTCGTTGTTTAAGGTGGACCCAGTTGGGTCTTTGCCTCTGCAATCAAAGCCGGGTCTTGGGGATTTGCCGGAGAGCTGTGCGGCTGAGATTATGAGGTACTTGGACCCGCCGGAGATTTGCAAGCTGGCCAAGATGAATCGGGCTTTTCGTGGGGCTTCCTGGGCCGATTTTATATGGGAGTCGAAATTGCCTAGTAATTATCAGATTATTGTGAACAAAGTGTTTGGTGATGGGTTGGGAAATTTGGGGAAAAGAGATGTGTATGAGAGGCTTTGTAGGCCTAACCCGTTTGATGGGGGAGCCAAGATTGCTGATGAACGTCCAAGTGATGCGTCCGATTTGCTTGCTCGAATTTGCCACAGTAGGTTTCTTTTATATGGATTTAGCACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAGGTAGATGGGGAGGTCGAGTTCCCATTTCCAGCCGGGAAATACAGCTTGTATTTTAGGCTGCAGCTGGGACGCTCCTCTCAGAAGAGGTTTGGTCGCCGTGTTTGCAACACTGAGCATGTGCATGGCTGGGACAGAAAACCAGTGAGGTTCCAACTATGGACTTCAGAAGGTCAGTCTGCCTCATCCGAGTGCTTTTTAACTGAACCTGGGAAATGGAATCACTACCATGCTGGGGACTTTGTTGTGGAAAACCCAAATGCAGCAACAAAGATTAAACTCTCGATGACCCAGATTGATTGTACACACACCAAAGGCGGTCTCTGTTTAGACTCTGTAGTTATATACCCTAGTGAATTTAGAGAAAGGTTGAAGCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

273

Amino Acids

30.85

Weight (kDa)

8.36

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 133 - 262 5.5e-27 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 95, 122, 753
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 3 cut(s) 256, 366, 791
AcuI CTGAAG 2 cut(s) 401, 585
AfaI GTAC 2 cut(s) 113, 739
AfiI CCNNNNNNNGG 3 cut(s) 71, 308, 670
AgsI TTSAA 1 cut(s) 808
AjnI CCWGG 2 cut(s) 173, 643
AloI GAACNNNNNNTCC 2 cut(s) 440, 472
AluBI AGCT 4 cut(s) 90, 139, 483, 502
AluI AGCT 4 cut(s) 90, 139, 483, 502
Alw26I GTCTC 1 cut(s) 761
AoxI GGCC 3 cut(s) 141, 177, 293
ApeKI GCWGC 3 cut(s) 496, 499, 698
ApoI RAATTY 3 cut(s) 256, 366, 791
AspS9I GGNCC 3 cut(s) 31, 118, 177
AsuC2I CCSGG 2 cut(s) 66, 472
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 2 cut(s) 31, 118
BalI TGGCCA 1 cut(s) 143
BbvI GCAGC 3 cut(s) 483, 511, 710
BccI CCATC 3 cut(s) 239, 302, 437
BceAI ACGGC 1 cut(s) 519
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 2 cut(s) 175, 645
BcnI CCSGG 2 cut(s) 66, 472
BcoDI GTCTC 1 cut(s) 761
BfaI CTAG 2 cut(s) 207, 786
BfmI CTRYAG 2 cut(s) 497, 771
BisI GCNGC 4 cut(s) 96, 497, 500, 699
BlsI GCNGC 4 cut(s) 97, 498, 501, 700
Bme1390I CCNGG 4 cut(s) 66, 175, 472, 645
Bme18I GGWCC 2 cut(s) 31, 118
BmgT120I GGNCC 3 cut(s) 31, 118, 177
BmiI GGNNCC 4 cut(s) 33, 120, 316, 587
BmrFI CCNGG 4 cut(s) 66, 175, 472, 645
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 66, 472
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 2 cut(s) 174, 644
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 308, 670
Bse1I ACTGG 2 cut(s) 35, 578
BseBI CCWGG 2 cut(s) 175, 645
BseDI CCNNGG 2 cut(s) 174, 644
BseGI GGATG 1 cut(s) 620
BseLI CCNNNNNNNGG 3 cut(s) 71, 308, 670
BseMII CTCAG 3 cut(s) 90, 530, 540
BseNI ACTGG 2 cut(s) 35, 578
BseRI GAGGAG 1 cut(s) 502
BseXI GCAGC 3 cut(s) 483, 511, 710
BseYI CCCAGC 4 cut(s) 8, 502, 564, 668
BshFI GGCC 3 cut(s) 143, 179, 295
BsiSI CCGG 4 cut(s) 65, 83, 125, 471
BslFI GGGAC 3 cut(s) 519, 581, 686
BslI CCNNNNNNNGG 3 cut(s) 71, 308, 670
BsmAI GTCTC 1 cut(s) 761
BsmFI GGGAC 3 cut(s) 519, 581, 686
BsnI GGCC 3 cut(s) 143, 179, 295
Bso31I GGTCTC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 737
BspACI CCGC 3 cut(s) 95, 122, 753
BspANI GGCC 3 cut(s) 143, 179, 295
BspCNI CTCAG 3 cut(s) 91, 529, 541
BspLI GGNNCC 4 cut(s) 33, 120, 316, 587
BspMAI CTGCAG 1 cut(s) 501
BspTNI GGTCTC 1 cut(s) 761
BsrGI TGTACA 1 cut(s) 737
BsrI ACTGG 2 cut(s) 35, 578
BssECI CCNNGG 2 cut(s) 174, 644
Bst2UI CCWGG 2 cut(s) 175, 645
Bst4CI ACNGT 2 cut(s) 377, 406
Bst6I CTCTTC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 737
BstC8I GCNNGC 3 cut(s) 137, 141, 360
BstDEI CTNAG 3 cut(s) 99, 516, 549
BstF5I GGATG 1 cut(s) 620
BstMAI GTCTC 1 cut(s) 761
BstMWI GCNNNNNNNGC 5 cut(s) 61, 176, 292, 323, 540
BstNI CCWGG 2 cut(s) 175, 645
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 4 cut(s) 64, 173, 470, 643
BstSFI CTRYAG 2 cut(s) 497, 771
BstV1I GCAGC 3 cut(s) 483, 511, 710
BsuRI GGCC 3 cut(s) 143, 179, 295
BtsCI GGATG 1 cut(s) 620
BtsIMutI CAGTG 3 cut(s) 402, 546, 585
Cac8I GCNNGC 3 cut(s) 137, 141, 360
Cfr13I GGNCC 3 cut(s) 31, 118, 177
CseI GACGC 2 cut(s) 336, 516
Csp6I GTAC 2 cut(s) 112, 738
CspCI CAANNNNNGTGG 2 cut(s) 410, 445
CviAII CATG 3 cut(s) 554, 560, 665
CviQI GTAC 2 cut(s) 112, 738
DdeI CTNAG 3 cut(s) 99, 516, 549
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco147I AGGCCT 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 761
Eco47I GGWCC 2 cut(s) 31, 118
Eco57I CTGAAG 2 cut(s) 401, 585
EcoRII CCWGG 2 cut(s) 173, 643
FaeI CATG 3 cut(s) 557, 563, 668
FaqI GGGAC 3 cut(s) 519, 581, 686
FatI CATG 3 cut(s) 553, 559, 664
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 96, 497, 500, 699
FokI GGATG 1 cut(s) 607
Fsp4HI GCNGC 4 cut(s) 96, 497, 500, 699
FspBI CTAG 2 cut(s) 207, 786
GluI GCNGC 4 cut(s) 96, 497, 500, 699
GsaI CCCAGC 4 cut(s) 12, 506, 568, 672
HaeIII GGCC 3 cut(s) 143, 179, 295
HapII CCGG 4 cut(s) 65, 83, 125, 471
HgaI GACGC 2 cut(s) 336, 516
Hin1II CATG 3 cut(s) 557, 563, 668
HinfI GANTC 4 cut(s) 151, 194, 655, 767
HpaII CCGG 4 cut(s) 65, 83, 125, 471
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 31, 229, 740
Hpy188I TCNGA 5 cut(s) 219, 352, 519, 604, 625
Hpy188III TCNNGA 1 cut(s) 718
Hpy8I GTNNAC 3 cut(s) 31, 229, 740
HpyAV CCTTC 1 cut(s) 599
HpyCH4III ACNGT 2 cut(s) 377, 406
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 7 cut(s) 55, 135, 410, 499, 543, 559, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 176, 292, 323, 540
HpyF3I CTNAG 3 cut(s) 99, 516, 549
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 3 cut(s) 557, 563, 668
LmnI GCTCC 2 cut(s) 314, 515
Lsp1109I GCAGC 3 cut(s) 483, 511, 710
LweI GCATC 1 cut(s) 334
MaeI CTAG 2 cut(s) 207, 786
MaeII ACGT 1 cut(s) 334
MboII GAAGA 2 cut(s) 407, 532
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 5 cut(s) 200, 211, 256, 366, 791
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 203, 761
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 60, 102, 276, 430, 442, 516, 523, 576, 628
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 3 cut(s) 24, 635, 711
MslI CAYNNNNRTG 3 cut(s) 558, 625, 663
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 4 cut(s) 65, 83, 125, 471
MspR9I CCNGG 4 cut(s) 66, 175, 472, 645
MvaI CCWGG 2 cut(s) 175, 645
MwoI GCNNNNNNNGC 5 cut(s) 61, 176, 292, 323, 540
NciI CCSGG 2 cut(s) 66, 472
NlaIII CATG 3 cut(s) 557, 563, 668
NlaIV GGNNCC 4 cut(s) 33, 120, 316, 587
NspI RCATGY 1 cut(s) 557
PceI AGGCCT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 2 cut(s) 151, 655
PkrI GCNGC 4 cut(s) 97, 498, 501, 700
PleI GAGTC 2 cut(s) 202, 761
PpsI GAGTC 2 cut(s) 202, 761
Psp6I CCWGG 2 cut(s) 173, 643
PspFI CCCAGC 4 cut(s) 8, 502, 564, 668
PspGI CCWGG 2 cut(s) 173, 643
PspN4I GGNNCC 4 cut(s) 33, 120, 316, 587
PspPI GGNCC 3 cut(s) 31, 118, 177
PstI CTGCAG 1 cut(s) 501
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 113, 739
RsaNI GTAC 2 cut(s) 112, 738
RseI CAYNNNNRTG 3 cut(s) 558, 625, 663
SaqAI TTAA 3 cut(s) 24, 635, 711
SatI GCNGC 4 cut(s) 96, 497, 500, 699
Sau96I GGNCC 3 cut(s) 31, 118, 177
SchI GAGTC 2 cut(s) 203, 761
ScrFI CCNGG 4 cut(s) 66, 175, 472, 645
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 2 cut(s) 497, 771
SinI GGWCC 2 cut(s) 31, 118
SmiMI CAYNNNNRTG 3 cut(s) 558, 625, 663
Sse9I AATT 5 cut(s) 200, 211, 256, 366, 791
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 3 cut(s) 95, 122, 753
SspMI CTAG 2 cut(s) 207, 786
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 4 cut(s) 64, 173, 470, 643
TaaI ACNGT 2 cut(s) 377, 406
TaiI ACGT 1 cut(s) 337
TaqI TCGA 4 cut(s) 197, 364, 453, 719
TasI AATT 5 cut(s) 200, 211, 256, 366, 791
TatI WGTACW 1 cut(s) 737
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 151, 655
Tru1I TTAA 3 cut(s) 24, 635, 711
Tru9I TTAA 3 cut(s) 24, 635, 711
TscAI CASTG 3 cut(s) 409, 553, 585
TseI GCWGC 3 cut(s) 496, 499, 698
TspDTI ATGAA 2 cut(s) 164, 345
TspRI CASTG 3 cut(s) 409, 553, 585
VpaK11BI GGWCC 2 cut(s) 31, 118
XapI RAATTY 3 cut(s) 256, 366, 791
XceI RCATGY 1 cut(s) 557
XspI CTAG 2 cut(s) 207, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.