MD04G1067200.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013870
Physical Location & Seq
Forward (+)
9032080 .. 9032970
891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1067200.v1.1.491

Sequence Viewer

Length: 450 bp
ATGCCCCCAAGTCCCCTGGTTCTTGAATTTTGCTCAGTTGCATATCTTCAGCAAATATGGTGGTTTGAAGTTGATGGGGAAGTTGAGTTCCCGTTTCCTGTCGGGACATACAGCCTATTCTTCAGGTTGCAGCTGGGACGGTCTTCTCAGAAGAGGTTTGGTCGCCGAGTTTGCAACATTGAGCATGTCCACGGTTGGGACATAAAACCTGTGAGGTTCCAGCTTTGGACTTCAGAAGGTCACTATGCCTCGTCTCAATGCTTTTTAACCGAACCTGGAAAATGGAATTACTACCATGTTGGGGACTTTGTTGTGGAGAAGCCGAATGCATCAACGAAGATTAAACTCTGTATGACCCAGATTGATTGCACCCACACCAAAGGCGGTCTCTGTTTAGACTCTGTACTTATATACCCTAGCGAATTTAGAGAAAGGCTAAAGCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

150

Amino Acids

17.44

Weight (kDa)

7.65

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 9 - 139 2.3e-25 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 384
AcsI RAATTY 2 cut(s) 26, 422
AcuI CTGAAG 3 cut(s) 32, 106, 216
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 196, 301
AgsI TTSAA 2 cut(s) 26, 68
AjnI CCWGG 2 cut(s) 15, 274
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 133, 223
AluI AGCT 2 cut(s) 133, 223
Alw26I GTCTC 2 cut(s) 258, 392
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 2 cut(s) 26, 422
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 17, 276
BcoDI GTCTC 2 cut(s) 258, 392
BfaI CTAG 1 cut(s) 417
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 2 cut(s) 17, 276
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 17, 276
BmsI GCATC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 15, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 301
BseBI CCWGG 2 cut(s) 17, 276
BseDI CCNNGG 2 cut(s) 15, 190
BseLI CCNNNNNNNGG 2 cut(s) 196, 301
BseMII CTCAG 2 cut(s) 48, 161
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 133
BslFI GGGAC 4 cut(s) 118, 150, 212, 317
BslI CCNNNNNNNGG 2 cut(s) 196, 301
BsmAI GTCTC 2 cut(s) 258, 392
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 4 cut(s) 118, 150, 212, 317
BsmI GAATGC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 392
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 2 cut(s) 47, 160
BspLI GGNNCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 15, 190
Bst2UI CCWGG 2 cut(s) 17, 276
Bst4CI ACNGT 2 cut(s) 141, 194
Bst6I CTCTTC 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 34, 147
BstDSI CCRYGG 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 258, 392
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 2 cut(s) 17, 276
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 15, 274
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 190
Csp6I GTAC 1 cut(s) 404
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 2 cut(s) 185, 296
CviJI RGCY 5 cut(s) 114, 133, 223, 322, 436
CviKI_1 RGCY 5 cut(s) 114, 133, 223, 322, 436
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 2 cut(s) 34, 147
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 392
Eco57I CTGAAG 3 cut(s) 32, 106, 216
EcoRII CCWGG 2 cut(s) 15, 274
EcoT22I ATGCAT 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 2 cut(s) 188, 299
FaqI GGGAC 4 cut(s) 118, 150, 212, 317
FatI CATG 2 cut(s) 184, 295
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 417
GluI GCNGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 188, 299
HinfI GANTC 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 150, 235
Hpy188III TCNNGA 2 cut(s) 23, 103
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 141, 194
HpyCH4V TGCA 5 cut(s) 41, 130, 174, 329, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 2 cut(s) 34, 147
Hsp92II CATG 2 cut(s) 188, 299
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 338
MaeI CTAG 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 5 cut(s) 38, 112, 135, 163, 349
MluCI AATT 3 cut(s) 26, 286, 422
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 3 cut(s) 147, 207, 259
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 2 cut(s) 266, 342
MspA1I CMGCKG 1 cut(s) 133
MspR9I CCNGG 2 cut(s) 17, 276
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 2 cut(s) 17, 276
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 2 cut(s) 188, 299
NlaIV GGNNCC 1 cut(s) 218
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 239
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 188
PctI GAATGC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 15, 274
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 2 cut(s) 15, 274
PspN4I GGNNCC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 266, 342
SatI GCNGC 1 cut(s) 131
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 17, 276
SetI ASST 8 cut(s) 128, 135, 158, 211, 218, 225, 241, 277
SfaNI GCATC 1 cut(s) 338
Sse9I AATT 3 cut(s) 26, 286, 422
SsiI CCGC 1 cut(s) 384
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 15, 274
TaaI ACNGT 2 cut(s) 141, 194
TasI AATT 3 cut(s) 26, 286, 422
TatI WGTACW 1 cut(s) 403
Tru1I TTAA 2 cut(s) 266, 342
Tru9I TTAA 2 cut(s) 266, 342
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 1 cut(s) 239
XapI RAATTY 2 cut(s) 26, 422
XceI RCATGY 1 cut(s) 188
XspI CTAG 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.