FvH4_5g01540

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013870
Physical Location & Seq
Reverse (-)
939609 .. 942412
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01540.t1

Sequence Viewer

Length: 864 bp
ATGGGTTCCGGCTTCTCGTTCTTCAAGGCAGACCCAGTTGGGTGCTCGCCTCTGCCGGCGAAGCCCGGTCTTGGGGACTTGCCGGAGAGCTGCGCGGCGGAGATTATGGGGTACTTGGACCCGCCGGAGATTTGTAAACTGGCCAAAATGAATCGGGCTTTTCGTGGGGCGTCGTGGGCTGATTTCATTTGGGAGGCGAAGTTGCCTAGTAATTATCAGATTATTGTGAAGAAGGTTTTTGGTGATGGGTTGGGAGATTTGGGGAAGAGAGATGTGTATGAGAGGCTTTGTAGGCCTAACACTTTTGATGGGGGAGCCAAGACGGTTTGGCTGGATAAGAGCACAGGATCTGCTTGCTTGTCGATTTCGTCAAAGGGATTAGCAATCACCGGAATTGATGATCGGAGGTATTGGAATCATATTCCTACTGAAGAATCTAGATTTAGCACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAGGTAGATGGGGAGGTTGAGTTCCCATTTCCAGCTGGAAAATACAGCCTGTTTTTTAGGCTACAGCTGGGACGCTCTTCTCAGAAGAGGTTTGGCCGCCGTGTTTGCAACACTCAGCATGTACATGGCTGGGACAGAAAACCAGTGAGGTTCCAACTTTGGACTTCAGAAGGTCAGTATGCCTCATCCGAGTGCTTTTTAACTGAACCTGGGAAATGGAATCACTACCATGCTGGGGACTTTGTTGTGGAAAACCCAAACACAGCAACAAAGATTAAACTCTCGATGACCCAGATTGATTGTACACACACCAAAGGCGGTCTCTGTTTAGACTCTGTAGTTATATACCCTAGTGAATTTAGAGAAAGGTTGAAGCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

288

Amino Acids

32.45

Weight (kDa)

8.5

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 277 4.8e-39 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 5 cut(s) 95, 98, 122, 577, 798
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 2 cut(s) 141, 574
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 3 cut(s) 446, 450, 630
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 3 cut(s) 113, 603, 784
AfiI CCNNNNNNNGG 3 cut(s) 71, 72, 715
AgsI TTSAA 2 cut(s) 25, 853
AjnI CCWGG 1 cut(s) 688
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 3 cut(s) 90, 515, 547
AluI AGCT 3 cut(s) 90, 515, 547
Alw21I GWGCWC 2 cut(s) 47, 344
Alw26I GTCTC 1 cut(s) 806
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 3 cut(s) 141, 293, 574
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 836
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 254, 379
AvaII GGWCC 1 cut(s) 118
BalI TGGCCA 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 47, 344
BbvI GCAGC 1 cut(s) 77
BccI CCATC 3 cut(s) 239, 302, 482
BceAI ACGGC 1 cut(s) 564
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 806
BfaI CTAG 3 cut(s) 207, 438, 831
BfmI CTRYAG 2 cut(s) 542, 816
BisI GCNGC 3 cut(s) 91, 96, 577
BlsI GCNGC 3 cut(s) 92, 97, 578
Bme1390I CCNGG 2 cut(s) 66, 690
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 4 cut(s) 7, 120, 316, 632
BmrFI CCNGG 2 cut(s) 66, 690
BmrI ACTGGG 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 1 cut(s) 689
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 485, 515
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 72, 715
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 35, 144, 623
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 689
BseGI GGATG 1 cut(s) 665
BseLI CCNNNNNNNGG 3 cut(s) 71, 72, 715
BseMII CTCAG 2 cut(s) 575, 608
BseNI ACTGG 3 cut(s) 35, 144, 623
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 3 cut(s) 547, 609, 713
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 3 cut(s) 143, 295, 576
BsiHKAI GWGCWC 2 cut(s) 47, 344
BsiSI CCGG 6 cut(s) 9, 56, 66, 83, 125, 390
BslFI GGGAC 4 cut(s) 89, 564, 626, 731
BslI CCNNNNNNNGG 3 cut(s) 71, 72, 715
BsmAI GTCTC 1 cut(s) 806
BsmFI GGGAC 4 cut(s) 89, 564, 626, 731
BsnI GGCC 3 cut(s) 143, 295, 576
Bso31I GGTCTC 1 cut(s) 806
Bsp1286I GDGCHC 2 cut(s) 47, 344
Bsp1407I TGTACA 2 cut(s) 601, 782
Bsp143I GATC 2 cut(s) 347, 400
BspACI CCGC 5 cut(s) 95, 98, 122, 577, 798
BspANI GGCC 3 cut(s) 143, 295, 576
BspCNI CTCAG 2 cut(s) 574, 607
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 4 cut(s) 7, 120, 316, 632
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 806
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 2 cut(s) 601, 782
BsrI ACTGG 3 cut(s) 35, 144, 623
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 689
BssMI GATC 2 cut(s) 347, 400
BssNI GRCGYC 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 325, 451
Bst6I CTCTTC 3 cut(s) 260, 560, 562
BstACI GRCGYC 1 cut(s) 170
BstAUI TGTACA 2 cut(s) 601, 782
BstC8I GCNNGC 3 cut(s) 47, 57, 355
BstDEI CTNAG 2 cut(s) 561, 594
BstF5I GGATG 1 cut(s) 665
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 2 cut(s) 350, 403
BstMAI GTCTC 1 cut(s) 806
BstMBI GATC 2 cut(s) 347, 400
BstMWI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 585
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 64, 688
BstSFI CTRYAG 2 cut(s) 542, 816
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 143, 295, 576
BtsCI GGATG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 447, 630
Cac8I GCNNGC 3 cut(s) 47, 57, 355
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 2 cut(s) 159, 561
Csp6I GTAC 3 cut(s) 112, 602, 783
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 3 cut(s) 599, 605, 710
CviQI GTAC 3 cut(s) 112, 602, 783
DdeI CTNAG 2 cut(s) 561, 594
DpnI GATC 2 cut(s) 349, 402
DpnII GATC 2 cut(s) 347, 400
EaeI YGGCCR 2 cut(s) 141, 574
Eam1104I CTCTTC 3 cut(s) 260, 560, 562
EarI CTCTTC 3 cut(s) 260, 560, 562
EciI GGCGGA 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 3 cut(s) 446, 450, 630
EcoRII CCWGG 1 cut(s) 688
FaeI CATG 3 cut(s) 602, 608, 713
FaqI GGGAC 4 cut(s) 89, 564, 626, 731
FatI CATG 3 cut(s) 598, 604, 709
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 91, 96, 577
FokI GGATG 1 cut(s) 652
Fsp4HI GCNGC 3 cut(s) 91, 96, 577
FspBI CTAG 3 cut(s) 207, 438, 831
GlaI GCGC 1 cut(s) 94
GluI GCNGC 3 cut(s) 91, 96, 577
GsaI CCCAGC 3 cut(s) 551, 613, 717
HaeIII GGCC 3 cut(s) 143, 295, 576
HapII CCGG 6 cut(s) 9, 56, 66, 83, 125, 390
HgaI GACGC 2 cut(s) 159, 561
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 602, 608, 713
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HinfI GANTC 5 cut(s) 151, 415, 434, 700, 812
HpaII CCGG 6 cut(s) 9, 56, 66, 83, 125, 390
HphI GGTGA 2 cut(s) 254, 379
Hpy166II GTNNAC 2 cut(s) 137, 785
Hpy188I TCNGA 5 cut(s) 219, 405, 564, 649, 670
Hpy188III TCNNGA 2 cut(s) 438, 763
Hpy8I GTNNAC 2 cut(s) 137, 785
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 226, 644
HpyCH4III ACNGT 2 cut(s) 325, 451
HpyCH4V TGCA 2 cut(s) 455, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 585
HpyF3I CTNAG 2 cut(s) 561, 594
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 602, 608, 713
HspAI GCGC 1 cut(s) 93
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 347, 400
LguI GCTCTTC 1 cut(s) 562
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 3 cut(s) 207, 438, 831
MalI GATC 2 cut(s) 349, 402
MboI GATC 2 cut(s) 347, 400
MboII GAAGA 7 cut(s) 13, 241, 277, 443, 452, 549, 577
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 47, 344
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 211, 393, 836
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 9 cut(s) 60, 187, 276, 399, 475, 487, 561, 621, 673
Mox20I TGGCCA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 55
MscI TGGCCA 1 cut(s) 143
MseI TTAA 2 cut(s) 680, 756
MslI CAYNNNNRTG 3 cut(s) 603, 670, 708
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 515, 547
MspI CCGG 6 cut(s) 9, 56, 66, 83, 125, 390
MspR9I CCNGG 2 cut(s) 66, 690
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 585
NaeI GCCGGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 347, 400
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 3 cut(s) 602, 608, 713
NlaIV GGNNCC 4 cut(s) 7, 120, 316, 632
NspI RCATGY 1 cut(s) 602
PceI AGGCCT 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 151, 415, 434, 700
PkrI GCNGC 3 cut(s) 92, 97, 578
PleI GAGTC 1 cut(s) 806
PpsI GAGTC 1 cut(s) 806
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 3 cut(s) 547, 609, 713
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 4 cut(s) 7, 120, 316, 632
PspPI GGNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 515, 547
RsaI GTAC 3 cut(s) 113, 603, 784
RsaNI GTAC 3 cut(s) 112, 602, 783
RseI CAYNNNNRTG 3 cut(s) 603, 670, 708
SapI GCTCTTC 1 cut(s) 562
SaqAI TTAA 2 cut(s) 680, 756
SatI GCNGC 3 cut(s) 91, 96, 577
Sau3AI GATC 2 cut(s) 347, 400
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 2 cut(s) 66, 690
SduI GDGCHC 2 cut(s) 47, 344
SfcI CTRYAG 2 cut(s) 542, 816
SinI GGWCC 1 cut(s) 118
SmiMI CAYNNNNRTG 3 cut(s) 603, 670, 708
Sse9I AATT 3 cut(s) 211, 393, 836
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 5 cut(s) 95, 98, 122, 577, 798
SspMI CTAG 3 cut(s) 207, 438, 831
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 64, 688
TaaI ACNGT 2 cut(s) 325, 451
TaqI TCGA 2 cut(s) 362, 764
TasI AATT 3 cut(s) 211, 393, 836
TatI WGTACW 2 cut(s) 601, 782
TauI GCSGC 2 cut(s) 98, 579
TfiI GAWTC 4 cut(s) 151, 415, 434, 700
Tru1I TTAA 2 cut(s) 680, 756
Tru9I TTAA 2 cut(s) 680, 756
TscAI CASTG 2 cut(s) 454, 630
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 164, 175
TspRI CASTG 2 cut(s) 454, 630
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 836
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 1 cut(s) 602
XspI CTAG 3 cut(s) 207, 438, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.