Rw7G015530

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013870
Physical Location & Seq
Forward (+)
15675919 .. 15677609
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015530.1

Sequence Viewer

Length: 861 bp
ATGGGTGCTGGGTTCTCGTTGTTTAAGGTGGACCCAGTTGGGTCTTTGCCTCTGCAATCAAGGCCGGGTCTTGGGGATTTGCCGGAGAGCTGTGCGGCGGAGATTATGAGGTACTTGGACCCGCCGGAGATTTGCAAGCTGGCCAAGATGAATCGGGCTTTTCGTGGGGCTTCCTGGGCCGATTTTATATGGGAGTCGAAATTGCCTAGTAATTATCAGATTATTGTGAACAAAGTGTTTGGTGATGGGTTGGGAAATTTGGGGAAAAGAGATGTGTATGAGAGGCTTTGTAGGCCTAACCCCTTTGATGGGGGAGCCAAGACGGTTTGGCTGGATAAGAGCACAGGATCTGCTTGCTTGTCCATTTCGTCCAAGGGATTAGCAATCACTGGAATCGATGATCGGAGATATTGGAATCATATTCCTACCGAAGAATCTAGATTCAGAACTGTTGCATATCTTCAGCAAATATGGTGGTTTGAGGTAGGGGAGGTCGAGTTCCCATTTCCAGCTGGTAAATACAGCTTGTATTTTAGGCTGCAACTGGGACGCTCTTCTCAGAAGAGGTTTGGTCGCCGTGTTTGCAACACTGAGCATGTCCATGGCTGGGACAGAAAACCAGTGAGGTTCCAACTATGGACTTCAGAAGGTCAGTCTGCCTCATCCGAGTGCTTTTTAACTGAACCTGGGAAATGGAATCACTACCATGCTGGGGACTTTGTCGTGGAAAACCCAAATGCAGCAACAAAGATTAAACTCTCGATGACCCAGATTGATTGTACACACACCAAAGGCGGTCTCTGTTTAGACTCTGTAGTTATATACCCTAGTGAATTTAGAGAAAGGTTGAAGCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

286

Amino Acids

32.47

Weight (kDa)

8.85

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 276 8.4e-37 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12710 AT1G12710 AT1G63090
fragaria_vesca FvH4_5g01540
malus_domestica MD04G1067200.v1.1 MD06G1073200.v1.1
prunus_persica Prupe.5G091600_v2.0.a1
pyrus_communis pycom04g06030
rosa_chinensis RchiOBHm_Chr7g0199151
rosa_laevigata RLG00000003810
rosa_multiflora Rmu_sc0006266.1_g000060
rosa_roxburghii Rroxscaffold_3G00257010
rosa_rugosa Rorug07G0053000
rosa_samantha Rh7BG180200 Rh7CG185800 Rh7DG179600
rosa_wichuraiana Rw7G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 95, 98, 122, 795
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 256, 833
AcuI CTGAAG 2 cut(s) 446, 627
AfaI GTAC 2 cut(s) 113, 781
AfiI CCNNNNNNNGG 5 cut(s) 71, 308, 309, 607, 712
AgsI TTSAA 1 cut(s) 850
AjnI CCWGG 2 cut(s) 173, 685
AloI GAACNNNNNNTCC 2 cut(s) 482, 514
AluBI AGCT 4 cut(s) 90, 139, 512, 525
AluI AGCT 4 cut(s) 90, 139, 512, 525
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 4 cut(s) 62, 141, 177, 293
ApeKI GCWGC 2 cut(s) 538, 740
ApoI RAATTY 2 cut(s) 256, 833
AspS9I GGNCC 3 cut(s) 31, 118, 177
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 2 cut(s) 31, 118
BalI TGGCCA 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 525, 752
BccI CCATC 2 cut(s) 239, 302
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 2 cut(s) 175, 687
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 3 cut(s) 207, 438, 828
BfmI CTRYAG 1 cut(s) 813
BisI GCNGC 3 cut(s) 96, 539, 741
BlsI GCNGC 3 cut(s) 97, 540, 742
Bme1390I CCNGG 3 cut(s) 66, 175, 687
Bme18I GGWCC 2 cut(s) 31, 118
BmgT120I GGNCC 3 cut(s) 31, 118, 177
BmiI GGNNCC 4 cut(s) 33, 120, 316, 629
BmrFI CCNGG 3 cut(s) 66, 175, 687
BmrI ACTGGG 2 cut(s) 29, 554
BmuI ACTGGG 2 cut(s) 29, 554
BpuMI CCSGG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 803
BsaJI CCNNGG 4 cut(s) 174, 372, 601, 686
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 308, 309, 607, 712
Bse1I ACTGG 4 cut(s) 35, 394, 549, 620
BseBI CCWGG 2 cut(s) 175, 687
BseCI ATCGAT 1 cut(s) 396
BseDI CCNNGG 4 cut(s) 174, 372, 601, 686
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 5 cut(s) 71, 308, 309, 607, 712
BseMII CTCAG 2 cut(s) 572, 582
BseNI ACTGG 4 cut(s) 35, 394, 549, 620
BseXI GCAGC 2 cut(s) 525, 752
BseYI CCCAGC 3 cut(s) 8, 606, 710
BshFI GGCC 4 cut(s) 64, 143, 179, 295
BshVI ATCGAT 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 3 cut(s) 65, 83, 125
BslFI GGGAC 3 cut(s) 561, 623, 728
BslI CCNNNNNNNGG 5 cut(s) 71, 308, 309, 607, 712
BsmAI GTCTC 1 cut(s) 803
BsmFI GGGAC 3 cut(s) 561, 623, 728
BsnI GGCC 4 cut(s) 64, 143, 179, 295
Bso31I GGTCTC 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 779
Bsp143I GATC 2 cut(s) 347, 400
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 4 cut(s) 95, 98, 122, 795
BspANI GGCC 4 cut(s) 64, 143, 179, 295
BspCNI CTCAG 2 cut(s) 571, 583
BspDI ATCGAT 1 cut(s) 396
BspLI GGNNCC 4 cut(s) 33, 120, 316, 629
BspPI GGATC 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 803
BsrGI TGTACA 1 cut(s) 779
BsrI ACTGG 4 cut(s) 35, 394, 549, 620
BssECI CCNNGG 4 cut(s) 174, 372, 601, 686
BssMI GATC 2 cut(s) 347, 400
BssT1I CCWWGG 2 cut(s) 372, 601
Bst2UI CCWGG 2 cut(s) 175, 687
Bst4CI ACNGT 2 cut(s) 325, 451
Bst6I CTCTTC 2 cut(s) 557, 559
BstAUI TGTACA 1 cut(s) 779
BstC8I GCNNGC 3 cut(s) 137, 141, 355
BstDEI CTNAG 2 cut(s) 558, 591
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 1 cut(s) 662
BstKTI GATC 2 cut(s) 350, 403
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 2 cut(s) 347, 400
BstMWI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 582
BstNI CCWGG 2 cut(s) 175, 687
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 3 cut(s) 64, 173, 685
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 2 cut(s) 525, 752
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 396
BsuRI GGCC 4 cut(s) 64, 143, 179, 295
BsuTUI ATCGAT 1 cut(s) 396
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 1 cut(s) 662
BtsIMutI CAGTG 3 cut(s) 387, 588, 627
Cac8I GCNNGC 3 cut(s) 137, 141, 355
CaiI CAGNNNCTG 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 31, 118, 177
ClaI ATCGAT 1 cut(s) 396
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 112, 780
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 3 cut(s) 596, 602, 707
CviQI GTAC 2 cut(s) 112, 780
DdeI CTNAG 2 cut(s) 558, 591
DpnI GATC 2 cut(s) 349, 402
DpnII GATC 2 cut(s) 347, 400
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 557, 559
EarI CTCTTC 2 cut(s) 557, 559
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 372, 601
Eco147I AGGCCT 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 803
Eco47I GGWCC 2 cut(s) 31, 118
Eco57I CTGAAG 2 cut(s) 446, 627
EcoRII CCWGG 2 cut(s) 173, 685
EcoT14I CCWWGG 2 cut(s) 372, 601
ErhI CCWWGG 2 cut(s) 372, 601
FaeI CATG 3 cut(s) 599, 605, 710
FaqI GGGAC 3 cut(s) 561, 623, 728
FatI CATG 3 cut(s) 595, 601, 706
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 96, 539, 741
FokI GGATG 1 cut(s) 649
Fsp4HI GCNGC 3 cut(s) 96, 539, 741
FspBI CTAG 3 cut(s) 207, 438, 828
GluI GCNGC 3 cut(s) 96, 539, 741
GsaI CCCAGC 3 cut(s) 12, 610, 714
HaeIII GGCC 4 cut(s) 64, 143, 179, 295
HapII CCGG 3 cut(s) 65, 83, 125
HgaI GACGC 1 cut(s) 558
Hin1II CATG 3 cut(s) 599, 605, 710
HinfI GANTC 8 cut(s) 151, 194, 393, 415, 434, 441, 697, 809
HpaII CCGG 3 cut(s) 65, 83, 125
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 3 cut(s) 31, 229, 782
Hpy188I TCNGA 6 cut(s) 219, 405, 446, 561, 646, 667
Hpy188III TCNNGA 2 cut(s) 438, 760
Hpy8I GTNNAC 3 cut(s) 31, 229, 782
HpyAV CCTTC 1 cut(s) 641
HpyCH4III ACNGT 2 cut(s) 325, 451
HpyCH4V TGCA 6 cut(s) 55, 135, 455, 541, 585, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 582
HpyF3I CTNAG 2 cut(s) 558, 591
Hsp92II CATG 3 cut(s) 599, 605, 710
Kzo9I GATC 2 cut(s) 347, 400
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 525, 752
MaeI CTAG 3 cut(s) 207, 438, 828
MalI GATC 2 cut(s) 349, 402
MboI GATC 2 cut(s) 347, 400
MboII GAAGA 4 cut(s) 443, 452, 546, 574
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 1 cut(s) 344
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 200, 211, 256, 833
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 2 cut(s) 203, 803
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 8 cut(s) 60, 102, 276, 475, 484, 558, 618, 670
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 3 cut(s) 24, 677, 753
MslI CAYNNNNRTG 3 cut(s) 600, 667, 705
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 3 cut(s) 65, 83, 125
MspR9I CCNGG 3 cut(s) 66, 175, 687
MvaI CCWGG 2 cut(s) 175, 687
MwoI GCNNNNNNNGC 4 cut(s) 61, 176, 292, 582
NciI CCSGG 1 cut(s) 66
NcoI CCATGG 1 cut(s) 601
NdeII GATC 2 cut(s) 347, 400
NlaIII CATG 3 cut(s) 599, 605, 710
NlaIV GGNNCC 4 cut(s) 33, 120, 316, 629
NspI RCATGY 1 cut(s) 599
PceI AGGCCT 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PfeI GAWTC 6 cut(s) 151, 393, 415, 434, 441, 697
PflFI GACNNNGTC 1 cut(s) 719
PkrI GCNGC 3 cut(s) 97, 540, 742
PleI GAGTC 2 cut(s) 202, 803
PpsI GAGTC 2 cut(s) 202, 803
Psp6I CCWGG 2 cut(s) 173, 685
PspFI CCCAGC 3 cut(s) 8, 606, 710
PspGI CCWGG 2 cut(s) 173, 685
PspN4I GGNNCC 4 cut(s) 33, 120, 316, 629
PspPI GGNCC 3 cut(s) 31, 118, 177
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 2 cut(s) 113, 781
RsaNI GTAC 2 cut(s) 112, 780
RseI CAYNNNNRTG 3 cut(s) 600, 667, 705
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 3 cut(s) 24, 677, 753
SatI GCNGC 3 cut(s) 96, 539, 741
Sau3AI GATC 2 cut(s) 347, 400
Sau96I GGNCC 3 cut(s) 31, 118, 177
SchI GAGTC 2 cut(s) 203, 803
ScrFI CCNGG 3 cut(s) 66, 175, 687
SduI GDGCHC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 813
SinI GGWCC 2 cut(s) 31, 118
SmiMI CAYNNNNRTG 3 cut(s) 600, 667, 705
Sse9I AATT 4 cut(s) 200, 211, 256, 833
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 4 cut(s) 95, 98, 122, 795
SspMI CTAG 3 cut(s) 207, 438, 828
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 3 cut(s) 64, 173, 685
StyI CCWWGG 2 cut(s) 372, 601
TaaI ACNGT 2 cut(s) 325, 451
TaqI TCGA 4 cut(s) 197, 396, 495, 761
TasI AATT 4 cut(s) 200, 211, 256, 833
TatI WGTACW 1 cut(s) 779
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 6 cut(s) 151, 393, 415, 434, 441, 697
Tru1I TTAA 3 cut(s) 24, 677, 753
Tru9I TTAA 3 cut(s) 24, 677, 753
TscAI CASTG 3 cut(s) 394, 595, 627
TseI GCWGC 2 cut(s) 538, 740
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 3 cut(s) 394, 595, 627
Tth111I GACNNNGTC 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 31, 118
XapI RAATTY 2 cut(s) 256, 833
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 1 cut(s) 599
XspI CTAG 3 cut(s) 207, 438, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.