Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Forward (+)

4374205 .. 4378514

Gene Structure 4310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGACTTCGAGATATTGGGTGGTGTCTCTTCCAGTGAAAGACTCTGCTTCTTCGTTATGGAATCGATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAGTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAAGAATTGGAGAGGATTTCTGGTGTTGAGAGCAACGCTCTTACAGTTGATGGAGTTCCTGTTGATTCTTATCTCACCAGGTTTGTGTGGGATGAAGCTAAGTACCCAACAATGTCACCTCTGAAGGAGGTTGTGGACAATATTCAGTCTCAGGTTGCAAAAATTGAGGATGATCTCAAGGTTCGTGTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGAAGCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGAGTCCGAACATCTCGTAACTCTCCTTGCAGTTGTTCCGAAGTATTCCCAAAAAGACTGGCTAGCATGTTATGAGACTTTGACCGATTATGTGGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATTGCTGCTCGTGAGAAAGGATTCCAAGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGACTCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTTGCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTGGCATGTGTCTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGATTCTACCAACAGTTTATACTGGAAAAGCGAGGAGGATGCAGGAGCCATGGCTGGTTTAGCTGGTGACTCAGAGACACATCCTTATGTCTCCTTCACTATCAACCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

375

Amino Acids

42.62

Weight (kDa)

5.4

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	5 - 368	1.5e-127	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	816
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	335, 901, 990
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	752, 764, 1004
AjnI	CCWGG	2 cut(s)	308, 875
AluBI	AGCT	8 cut(s)	192, 329, 480, 485, 790, 828, 873, 1076
AluI	AGCT	8 cut(s)	192, 329, 480, 485, 790, 828, 873, 1076
Alw26I	GTCTC	7 cut(s)	30, 217, 384, 596, 767, 1082, 1108
AlwI	GGATC	1 cut(s)	816
AlwNI	CAGNNNCTG	1 cut(s)	876
ApeKI	GCWGC	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	731
AspA2I	CCTAGG	1 cut(s)	626
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	3 cut(s)	298, 339, 1091
AsuNHI	GCTAGC	2 cut(s)	589, 790
AvaII	GGWCC	1 cut(s)	630
AvrII	CCTAGG	1 cut(s)	626
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BauI	CACGAG	2 cut(s)	690, 720
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	1034, 1068
BciT130I	CCWGG	2 cut(s)	310, 877
BcoDI	GTCTC	7 cut(s)	30, 217, 384, 596, 767, 1082, 1108
BfaI	CTAG	3 cut(s)	590, 627, 791
BfrI	CTTAAG	1 cut(s)	179
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	1 cut(s)	717
BlnI	CCTAGG	1 cut(s)	626
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	2 cut(s)	310, 877
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	630
BmiI	GGNNCC	3 cut(s)	142, 624, 1060
BmrFI	CCNGG	2 cut(s)	310, 877
BmsI	GCATC	2 cut(s)	870, 1042
BmtI	GCTAGC	2 cut(s)	593, 794
BplI	GAGNNNNNCTC	6 cut(s)	65, 97, 253, 285, 814, 846
BpmI	CTGGAG	1 cut(s)	87
Bpu1102I	GCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	439, 626, 1062
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bse1I	ACTGG	5 cut(s)	32, 104, 590, 852, 1040
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	310, 877
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	3 cut(s)	439, 626, 1062
BseGI	GGATG	5 cut(s)	328, 406, 885, 1057, 1093
BseJI	GATNNNNATC	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	395, 900, 1098
BseNI	ACTGG	5 cut(s)	32, 104, 590, 852, 1040
BseRI	GAGGAG	1 cut(s)	1061
BseXI	GCAGC	1 cut(s)	703
BshVI	ATCGAT	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	938, 965
BsmAI	GTCTC	7 cut(s)	30, 217, 384, 596, 767, 1082, 1108
BsmI	GAATGC	1 cut(s)	88
Bsp143I	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
Bsp1720I	GCTNAGC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	1062
BspCNI	CTCAG	3 cut(s)	394, 901, 1097
BspDI	ATCGAT	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	142, 624, 1060
BspOI	GCTAGC	2 cut(s)	593, 794
BspPI	GGATC	1 cut(s)	816
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	5 cut(s)	32, 104, 590, 852, 1040
BssECI	CCNNGG	3 cut(s)	439, 626, 1062
BssMI	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
BssSI	CACGAG	2 cut(s)	690, 720
BssT1I	CCWWGG	2 cut(s)	626, 1062
Bst2BI	CACGAG	2 cut(s)	690, 720
Bst2UI	CCWGG	2 cut(s)	310, 877
Bst4CI	ACNGT	4 cut(s)	277, 676, 929, 1028
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	591, 792
BstDEI	CTNAG	7 cut(s)	84, 145, 330, 381, 481, 909, 1084
BstDSI	CCRYGG	2 cut(s)	439, 1062
BstF5I	GGATG	5 cut(s)	328, 406, 885, 1057, 1093
BstKTI	GATC	6 cut(s)	81, 175, 219, 231, 406, 811
BstMAI	GTCTC	7 cut(s)	30, 217, 384, 596, 767, 1082, 1108
BstMBI	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	947, 1073
BstNI	CCWGG	2 cut(s)	310, 877
BstNSI	RCATGY	2 cut(s)	597, 954
BstSCI	CCNGG	2 cut(s)	308, 875
BstV1I	GCAGC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	64
BtgI	CCRYGG	2 cut(s)	439, 1062
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	5 cut(s)	328, 406, 885, 1057, 1093
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	2 cut(s)	39, 845
Cac8I	GCNNGC	2 cut(s)	591, 792
CaiI	CAGNNNCTG	1 cut(s)	876
Cfr13I	GGNCC	1 cut(s)	630
ClaI	ATCGAT	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	334, 900, 989
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	3 cut(s)	594, 951, 1063
CviQI	GTAC	3 cut(s)	334, 900, 989
DdeI	CTNAG	7 cut(s)	84, 145, 330, 381, 481, 909, 1084
DpnI	GATC	6 cut(s)	80, 174, 218, 230, 405, 810
DpnII	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	626, 1062
Eco47I	GGWCC	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	308, 875
EcoT14I	CCWWGG	2 cut(s)	626, 1062
EcoT22I	ATGCAT	1 cut(s)	885
ErhI	CCWWGG	2 cut(s)	626, 1062
FaeI	CATG	3 cut(s)	597, 954, 1066
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	3 cut(s)	593, 950, 1062
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	5 cut(s)	335, 413, 892, 1064, 1080
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	3 cut(s)	590, 627, 791
GluI	GCNGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	87
HapII	CCGG	2 cut(s)	938, 965
Hin1II	CATG	3 cut(s)	597, 954, 1066
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	9 cut(s)	41, 61, 149, 296, 530, 732, 775, 1016, 1082
HpaII	CCGG	2 cut(s)	938, 965
HphI	GGTGA	3 cut(s)	298, 339, 1091
Hpy166II	GTNNAC	4 cut(s)	367, 446, 782, 932
Hpy188I	TCNGA	4 cut(s)	354, 535, 567, 1087
Hpy188III	TCNNGA	8 cut(s)	9, 220, 491, 709, 722, 806, 812, 1001
Hpy8I	GTNNAC	4 cut(s)	367, 446, 782, 932
HpyAV	CCTTC	3 cut(s)	194, 349, 1117
HpyCH4III	ACNGT	4 cut(s)	277, 676, 929, 1028
HpyCH4V	TGCA	5 cut(s)	389, 557, 838, 883, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	947, 1073
HpyF3I	CTNAG	7 cut(s)	84, 145, 330, 381, 481, 909, 1084
Hsp92II	CATG	3 cut(s)	597, 954, 1066
Kzo9I	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
LmnI	GCTCC	3 cut(s)	878, 998, 1058
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	2 cut(s)	870, 1042
MabI	ACCWGGT	1 cut(s)	308
MaeI	CTAG	3 cut(s)	590, 627, 791
MaeIII	GTNAC	5 cut(s)	345, 491, 544, 676, 1079
MalI	GATC	6 cut(s)	80, 174, 218, 230, 405, 810
MboI	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
MboII	GAAGA	6 cut(s)	20, 42, 122, 245, 530, 649
MflI	RGATCY	1 cut(s)	78
MluCI	AATT	4 cut(s)	236, 393, 641, 703
MlyI	GAGTC	4 cut(s)	35, 539, 769, 1076
MmeI	TCCRAC	1 cut(s)	118
Mph1103I	ATGCAT	1 cut(s)	885
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	5 cut(s)	117, 180, 459, 510, 1126
MslI	CAYNNNNRTG	2 cut(s)	888, 1098
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	2 cut(s)	938, 965
MspR9I	CCNGG	2 cut(s)	310, 877
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	310, 877
MwoI	GCNNNNNNNGC	2 cut(s)	947, 1073
NcoI	CCATGG	1 cut(s)	1062
NdeII	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
NheI	GCTAGC	2 cut(s)	589, 790
NlaIII	CATG	3 cut(s)	597, 954, 1066
NlaIV	GGNNCC	3 cut(s)	142, 624, 1060
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	4 cut(s)	345, 491, 676, 1079
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	2 cut(s)	597, 954
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	61, 149, 296, 732, 1016
PfoI	TCCNGGA	1 cut(s)	875
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	4 cut(s)	35, 538, 769, 1076
PpsI	GAGTC	4 cut(s)	35, 538, 769, 1076
PpuMI	RGGWCCY	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	308, 875
PspGI	CCWGG	2 cut(s)	308, 875
PspN4I	GGNNCC	3 cut(s)	142, 624, 1060
PspPI	GGNCC	1 cut(s)	630
PspPPI	RGGWCCY	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	3 cut(s)	335, 901, 990
RsaNI	GTAC	3 cut(s)	334, 900, 989
RseI	CAYNNNNRTG	2 cut(s)	888, 1098
SaqAI	TTAA	5 cut(s)	117, 180, 459, 510, 1126
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	6 cut(s)	78, 172, 216, 228, 403, 808
Sau96I	GGNCC	1 cut(s)	630
SchI	GAGTC	4 cut(s)	35, 539, 769, 1076
ScrFI	CCNGG	2 cut(s)	310, 877
SexAI	ACCWGGT	1 cut(s)	308
SfaNI	GCATC	2 cut(s)	870, 1042
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1098
SmlI	CTYRAG	2 cut(s)	179, 407
SmoI	CTYRAG	2 cut(s)	179, 407
Sse9I	AATT	4 cut(s)	236, 393, 641, 703
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	3 cut(s)	590, 627, 791
StyD4I	CCNGG	2 cut(s)	308, 875
StyI	CCWWGG	2 cut(s)	626, 1062
TaaI	ACNGT	4 cut(s)	277, 676, 929, 1028
TaqI	TCGA	6 cut(s)	8, 64, 185, 231, 528, 635
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	4 cut(s)	236, 393, 641, 703
TfiI	GAWTC	5 cut(s)	61, 149, 296, 732, 1016
Tru1I	TTAA	5 cut(s)	117, 180, 459, 510, 1126
Tru9I	TTAA	5 cut(s)	117, 180, 459, 510, 1126
TscAI	CASTG	2 cut(s)	39, 845
TseFI	GTSAC	4 cut(s)	345, 491, 676, 1079
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	4 cut(s)	345, 491, 676, 1079
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	2 cut(s)	428, 731
TspRI	CASTG	2 cut(s)	39, 845
Vha464I	CTTAAG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	630
XceI	RCATGY	2 cut(s)	597, 954
XmaJI	CCTAGG	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	3 cut(s)	590, 627, 791
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.