Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Forward (+)

88493374 .. 88497177

Gene Structure 3804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG672000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCGAGCAGGTACTGGGTGGTGTCTCTGCCTGTCCAAAACTCGGCGTCGTCTTTATGGAACCGCCTCCAGGATCAAATCTCCAAGCATTCCTTCGACACTCCCCTCTACAGATTCAATATTCCCAATCTCCGCGTCGGAACCCTCGATTCTCTTCTCTCCCTCAGCGACGATCTCTTAAAGTCCAACAACTTCGTAGAGGGTGTTTCTCACAAGATCAGGCGCCAGATCGAGGACCTAGAGAAGGTTTCTGGAGTCGAGAGCAGCTCTCTCACCGTGGATGGAGTACCAGTCGATTCATACCTCACTAGGTTCGTTTGGGATGAAGCTAAGTTCCCGACAATGTCTCCTTTGAAGGAGGTCATCGACAGCATTCATGGTCAAGTTGCAAAGATCGAGGATGATCTCAAGGTTCGGGTAGCTGAGTATAACAATGTTCGCAGTCAACTTAATGCTATCAACCGAAAGCAGAGTGGAAGCTTAGCAGTCCGTGATCTTTCCAATTTAGTGAAATCAGAGGACATCGTTGTCTCGGAACATCTGGTGACCCTCCTTGCAATTGTTCCCAAGTACTCTCAGAAGGATTGGCTGTCAAGCTATGAGACCTTGACTAGTTATGTGGTCCCTAGGTCCTCTAAGAAGTTGTTTGAAGATAACGAATATGCTCTTTACAGTGTAACACTGTTTGGTCGAGTTGCAGATAATTTTAGAACAAGCGCTCGTGAAAAGGGATTCCAAGTGAGTTTTTTGTGCATCCTCTTTTGTTTTTCTATGAAAGATGGAAAACTGAATCTTCTCTTCTGCTTATGCTTTCTGAAATTTATTTACTGGCAGACTAGCATTGTCACAAGACATGTGTCCAGAATTGAGTTGCATGAAATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

295

Amino Acids

33.76

Weight (kDa)

7.67

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	5 - 247	1.5e-88	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	64, 133
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	818
AcyI	GRCGYC	2 cut(s)	47, 223
AfaI	GTAC	3 cut(s)	14, 288, 572
AfeI	AGCGCT	1 cut(s)	718
AfiI	CCNNNNNNNGG	4 cut(s)	43, 70, 232, 244
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	3 cut(s)	118, 355, 650
AhlI	ACTAGT	1 cut(s)	611
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	5 cut(s)	267, 329, 422, 480, 597
AluI	AGCT	5 cut(s)	267, 329, 422, 480, 597
Alw26I	GTCTC	4 cut(s)	30, 351, 535, 596
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	15
Aor51HI	AGCGCT	1 cut(s)	718
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	818
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	225, 719
AspS9I	GGNCC	3 cut(s)	235, 622, 630
AsuHPI	GGTGA	2 cut(s)	265, 556
AvaII	GGWCC	3 cut(s)	235, 622, 630
AvrII	CCTAGG	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	275, 773
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	4 cut(s)	30, 351, 535, 596
BcuI	ACTAGT	1 cut(s)	611
BfaI	CTAG	5 cut(s)	239, 309, 612, 627, 837
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	2 cut(s)	226, 720
BisI	GCNGC	1 cut(s)	265
BlnI	CCTAGG	1 cut(s)	626
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	3 cut(s)	235, 622, 630
BmgT120I	GGNCC	3 cut(s)	235, 622, 630
BmiI	GGNNCC	4 cut(s)	62, 142, 224, 624
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	25
BoxI	GACNNNNGTC	1 cut(s)	856
BplI	GAGNNNNNCTC	4 cut(s)	251, 283, 253, 285
BpmI	CTGGAG	2 cut(s)	53, 273
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	392
BsaHI	GRCGYC	2 cut(s)	47, 223
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	276, 626
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 331, 361
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 70, 232, 244
Bse1I	ACTGG	3 cut(s)	20, 290, 833
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	276, 626
BseGI	GGATG	4 cut(s)	286, 328, 406, 753
BseLI	CCNNNNNNNGG	4 cut(s)	43, 70, 232, 244
BseMII	CTCAG	3 cut(s)	178, 414, 590
BseNI	ACTGG	3 cut(s)	20, 290, 833
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	43, 70, 232, 244
BsmAI	GTCTC	4 cut(s)	30, 351, 535, 596
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	2 cut(s)	88, 372
Bso31I	GGTCTC	1 cut(s)	596
Bsp143I	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
Bsp1720I	GCTNAGC	1 cut(s)	481
BspACI	CCGC	2 cut(s)	64, 133
BspCNI	CTCAG	3 cut(s)	177, 415, 589
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	62, 142, 224, 624
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	596
BsrI	ACTGG	3 cut(s)	20, 290, 833
BssECI	CCNNGG	2 cut(s)	276, 626
BssMI	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
BssNI	GRCGYC	2 cut(s)	47, 223
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	277, 674, 684
Bst6I	CTCTTC	2 cut(s)	159, 803
BstACI	GRCGYC	2 cut(s)	47, 223
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	6 cut(s)	164, 330, 423, 481, 576, 636
BstDSI	CCRYGG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	4 cut(s)	286, 328, 406, 753
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	2 cut(s)	226, 720
BstHHI	GCGC	2 cut(s)	225, 719
BstKTI	GATC	7 cut(s)	76, 175, 219, 231, 396, 406, 496
BstMAI	GTCTC	4 cut(s)	30, 351, 535, 596
BstMBI	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	857
BstPAI	GACNNNNGTC	1 cut(s)	856
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	4 cut(s)	286, 328, 406, 753
BtsIMutI	CAGTG	2 cut(s)	679, 680
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	15
CfoI	GCGC	2 cut(s)	225, 719
Cfr13I	GGNCC	3 cut(s)	235, 622, 630
CseI	GACGC	2 cut(s)	36, 124
Csp6I	GTAC	3 cut(s)	13, 287, 571
CviAII	CATG	3 cut(s)	377, 854, 875
CviJI	RGCY	6 cut(s)	267, 329, 422, 480, 589, 597
CviKI_1	RGCY	6 cut(s)	267, 329, 422, 480, 589, 597
CviQI	GTAC	3 cut(s)	13, 287, 571
DdeI	CTNAG	6 cut(s)	164, 330, 423, 481, 576, 636
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	7 cut(s)	75, 174, 218, 230, 395, 405, 495
DpnII	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	159, 803
EarI	CTCTTC	2 cut(s)	159, 803
Eco130I	CCWWGG	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	596
Eco47I	GGWCC	3 cut(s)	235, 622, 630
Eco47III	AGCGCT	1 cut(s)	718
Eco91I	GGTNACC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	235, 630
EcoO65I	GGTNACC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	626
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	3 cut(s)	380, 857, 878
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	376, 853, 874
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	4 cut(s)	293, 335, 413, 740
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	5 cut(s)	239, 309, 612, 627, 837
GlaI	GCGC	2 cut(s)	224, 718
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	53, 273
HaeII	RGCGCY	2 cut(s)	226, 720
HgaI	GACGC	2 cut(s)	36, 124
HhaI	GCGC	2 cut(s)	225, 719
Hin1I	GRCGYC	2 cut(s)	47, 223
Hin1II	CATG	3 cut(s)	380, 857, 878
Hin6I	GCGC	2 cut(s)	223, 717
HinP1I	GCGC	2 cut(s)	223, 717
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	6 cut(s)	114, 149, 255, 296, 732, 790
HphI	GGTGA	2 cut(s)	265, 556
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	5 cut(s)	140, 517, 535, 579, 816
Hpy188III	TCNNGA	5 cut(s)	252, 259, 337, 722, 861
Hpy8I	GTNNAC	1 cut(s)	446
Hpy99I	CGWCG	3 cut(s)	52, 140, 173
HpyAV	CCTTC	4 cut(s)	103, 238, 349, 574
HpyCH4III	ACNGT	3 cut(s)	277, 674, 684
HpyCH4V	TGCA	5 cut(s)	389, 557, 698, 753, 874
HpyF3I	CTNAG	6 cut(s)	164, 330, 423, 481, 576, 636
Hsp92I	GRCGYC	2 cut(s)	47, 223
Hsp92II	CATG	3 cut(s)	380, 857, 878
HspAI	GCGC	2 cut(s)	223, 717
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	5 cut(s)	239, 309, 612, 627, 837
MaeIII	GTNAC	3 cut(s)	544, 676, 844
MalI	GATC	7 cut(s)	75, 174, 218, 230, 395, 405, 495
MboI	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
MboII	GAAGA	4 cut(s)	146, 662, 785, 790
MfeI	CAATTG	1 cut(s)	558
MluCI	AATT	5 cut(s)	502, 558, 703, 818, 864
Mly113I	GGCGCC	1 cut(s)	223
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	118, 210
MseI	TTAA	2 cut(s)	179, 450
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	2 cut(s)	88, 372
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	135
NarI	GGCGCC	1 cut(s)	223
NdeII	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
NlaIII	CATG	3 cut(s)	380, 857, 878
NlaIV	GGNNCC	4 cut(s)	62, 142, 224, 624
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	544, 844
NspI	RCATGY	1 cut(s)	857
PciI	ACATGT	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	2 cut(s)	88, 372
PfeI	GAWTC	5 cut(s)	114, 149, 296, 732, 790
PflFI	GACNNNGTC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	263
PpuMI	RGGWCCY	2 cut(s)	235, 630
PscI	ACATGT	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	856
Psp5II	RGGWCCY	2 cut(s)	235, 630
Psp6I	CCWGG	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	4 cut(s)	62, 142, 224, 624
PspPI	GGNCC	3 cut(s)	235, 622, 630
PspPPI	RGGWCCY	2 cut(s)	235, 630
PstNI	CAGNNNCTG	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	3 cut(s)	14, 288, 572
RsaNI	GTAC	3 cut(s)	13, 287, 571
SaqAI	TTAA	2 cut(s)	179, 450
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	7 cut(s)	73, 172, 216, 228, 393, 403, 493
Sau96I	GGNCC	3 cut(s)	235, 622, 630
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	762
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	3 cut(s)	235, 622, 630
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SpeI	ACTAGT	1 cut(s)	611
Sse9I	AATT	5 cut(s)	502, 558, 703, 818, 864
SsiI	CCGC	2 cut(s)	64, 133
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	5 cut(s)	239, 309, 612, 627, 837
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	3 cut(s)	277, 674, 684
TaqI	TCGA	8 cut(s)	96, 147, 231, 258, 294, 366, 396, 691
TasI	AATT	5 cut(s)	502, 558, 703, 818, 864
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	5 cut(s)	114, 149, 296, 732, 790
Tru1I	TTAA	2 cut(s)	179, 450
Tru9I	TTAA	2 cut(s)	179, 450
TscAI	CASTG	2 cut(s)	679, 687
TseFI	GTSAC	2 cut(s)	544, 844
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	2 cut(s)	544, 844
TspDTI	ATGAA	4 cut(s)	288, 339, 365, 788
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	679, 687
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	3 cut(s)	235, 622, 630
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	818
XceI	RCATGY	1 cut(s)	857
XmaJI	CCTAGG	1 cut(s)	626
XspI	CTAG	5 cut(s)	239, 309, 612, 627, 837
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.