FvH4_6g54180

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39566844 .. 39570589
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54180.t2

Sequence Viewer

Length: 1128 bp
ATGGCGAGCAGGTACTGGGTGGTGTCTCTGCCTGTTCAAAACTCGGCGTCGTCTTTATGGAACCGCCTCCAGGATCAAATCTCCAAGCATTCCTTCGACACTCCGCTCTACAGATTTCACATTCCCAATCTCCGCGTCGGAACCCTCGATTCTCTTCTCTCCCTCAGCGACGATCTCTTAAAGTCCAACAACTTCGTAGAGGGTGTTTCTCACAAGATCAGGCGTCAGATCGAGGAGCTTGAGAAGATTTCTGGAGTGGAGAGCAGCGCCCTCACTGTCGATGGAGTACCTGTGGATTCATATCTCACTAGATTCGTTTGGGATGAAGCGAAGTACCCGACAATGTCTCCTTTGAAGGAGATCATAGACAGCATTCATGGTCAAGTTGCAAAGATCGAGGATGATCTCAAGGTTCGGGTAGCTGAGTATAACAATGTCCGCAGTCAACTTAATGCGATCAACCGAAAGCAAAGCGGAAGCTTAGCAGTCCGTGATCTTTCCAATTTAGTCAAATCAGAGGACATTGTTGTCTCGGAACATCTGGTGACTCTCCTTGCAGTTGTTCTGAAGTACTCTCAGAAGGATTGGCTGTCAAGCTATGAGACCTTGACTAGTTATGTGGTCCCTAGGTCCTCTAAGAAGTTATTTGAAGATAATGAATATGCTCTTTACAGCGTAACACTGTTTGGTCGGGTTGCAGATAATTTTAGAACAAGCGCTCGTGAAAAGGGATTTCAAATTCGTGATTTCGAATATAGTTCTGAAGCACAAGAAAGTAGAAAGCAGGAGTTGGAAAAATTGGTACAAGACCAAGAAAATTTAAGAAGCTCGCTTCTGCAGTGGTGCTATACCAGTTACGGGGAGGTGTTCAGCTCCTGGATGCATTTTTGTGCTGTGCGTGTGTTTGCTGAGAGTATTCTGAGATATGGTTTACCACCATCTTTCTTGGCATGTGTTTTAGCTCCAGTTACAAAAAGTGAGAAGAAAGTACGATCGATCCTTGAAGGGCTGTGCGACAGTTCTAACAGTTTCTGGAAAACTGAAGATGAAGTGGGGGGAGCTATGGCTGGTCTAGCAGGTGATGCGGATGCGCATCCGTATGTTTCATTTAATATCAATCTTGTTTGA

Protein Analysis

376

Amino Acids

42.48

Weight (kDa)

5.63

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V-ATPase_C PF03223 5 - 339 8.1e-126 V-ATPase subunit C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1067
AasI GACNNNNNNGTC 1 cut(s) 527
Acc16I TGCGCA 1 cut(s) 1092
Acc36I ACCTGC 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 106
AccII CGCG 1 cut(s) 135
AciI CCGC 6 cut(s) 64, 104, 133, 439, 474, 1085
AclWI GGATC 2 cut(s) 81, 991
AcsI RAATTY 2 cut(s) 738, 817
AcuI CTGAAG 3 cut(s) 587, 783, 1062
AcyI GRCGYC 2 cut(s) 47, 223
AfaI GTAC 6 cut(s) 14, 288, 335, 572, 804, 990
AfeI AGCGCT 1 cut(s) 718
AfiI CCNNNNNNNGG 2 cut(s) 70, 858
AgsI TTSAA 5 cut(s) 38, 355, 650, 737, 1004
AhlI ACTAGT 1 cut(s) 611
AjnI CCWGG 2 cut(s) 69, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 8 cut(s) 238, 422, 480, 597, 828, 873, 962, 1061
AluI AGCT 8 cut(s) 238, 422, 480, 597, 828, 873, 962, 1061
Alw26I GTCTC 4 cut(s) 30, 351, 535, 596
AlwI GGATC 2 cut(s) 81, 991
AlwNI CAGNNNCTG 3 cut(s) 15, 876, 1032
Aor51HI AGCGCT 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 2 cut(s) 738, 817
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 3 cut(s) 269, 719, 1093
AspS9I GGNCC 2 cut(s) 622, 630
AsuHPI GGTGA 2 cut(s) 556, 1091
AsuII TTCGAA 1 cut(s) 750
AvaII GGWCC 2 cut(s) 622, 630
AvrII CCTAGG 1 cut(s) 626
BauI CACGAG 1 cut(s) 720
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 275, 946
BciT130I CCWGG 2 cut(s) 71, 877
BcoDI GTCTC 4 cut(s) 30, 351, 535, 596
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 4 cut(s) 309, 612, 627, 1073
BfmI CTRYAG 2 cut(s) 109, 836
BfoI RGCGCY 2 cut(s) 270, 720
BfuAI ACCTGC 1 cut(s) 1067
BisI GCNGC 1 cut(s) 265
BlnI CCTAGG 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 481
BlsI GCNGC 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 71, 877
Bme18I GGWCC 2 cut(s) 622, 630
BmgT120I GGNCC 2 cut(s) 622, 630
BmiI GGNNCC 3 cut(s) 62, 142, 624
BmrFI CCNGG 2 cut(s) 71, 877
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 4 cut(s) 870, 1072, 1078, 1102
BmuI ACTGGG 1 cut(s) 25
BpmI CTGGAG 3 cut(s) 53, 273, 948
Bpu10I CCTNAGC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 750
BpuEI CTTGAG 2 cut(s) 260, 392
Bsa29I ATCGAT 1 cut(s) 995
BsaBI GATNNNNATC 2 cut(s) 300, 1092
BsaHI GRCGYC 2 cut(s) 47, 223
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 626
BsaXI ACNNNNNCTCC 4 cut(s) 276, 306, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 858
Bse1I ACTGG 3 cut(s) 20, 852, 965
Bse8I GATNNNNATC 2 cut(s) 300, 1092
BseBI CCWGG 2 cut(s) 71, 877
BseCI ATCGAT 1 cut(s) 995
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 5 cut(s) 328, 406, 885, 1093, 1093
BseJI GATNNNNATC 2 cut(s) 300, 1092
BseLI CCNNNNNNNGG 2 cut(s) 70, 858
BseMII CTCAG 5 cut(s) 178, 414, 590, 900, 911
BseNI ACTGG 3 cut(s) 20, 852, 965
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 995
BshVI ATCGAT 1 cut(s) 995
BsiEI CGRYCG 1 cut(s) 995
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 70, 858
BsmAI GTCTC 4 cut(s) 30, 351, 535, 596
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 2 cut(s) 88, 372
Bso31I GGTCTC 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 750
Bsp1720I GCTNAGC 1 cut(s) 481
BspACI CCGC 6 cut(s) 64, 104, 133, 439, 474, 1085
BspCNI CTCAG 5 cut(s) 177, 415, 589, 901, 912
BspDI ATCGAT 1 cut(s) 995
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 3 cut(s) 62, 142, 624
BspMAI CTGCAG 1 cut(s) 840
BspMI ACCTGC 1 cut(s) 1067
BspPI GGATC 2 cut(s) 81, 991
BspT104I TTCGAA 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 596
BsrBI CCGCTC 1 cut(s) 106
BsrI ACTGG 3 cut(s) 20, 852, 965
BssECI CCNNGG 1 cut(s) 626
BssNI GRCGYC 2 cut(s) 47, 223
BssSI CACGAG 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 2 cut(s) 71, 877
Bst4CI ACNGT 4 cut(s) 277, 684, 1019, 1028
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 2 cut(s) 47, 223
BstAPI GCANNNNNTGC 1 cut(s) 1082
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 7, 830
BstDEI CTNAG 7 cut(s) 164, 423, 481, 576, 636, 909, 920
BstF5I GGATG 5 cut(s) 328, 406, 885, 1093, 1093
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 270, 720
BstHHI GCGC 3 cut(s) 269, 719, 1093
BstMAI GTCTC 4 cut(s) 30, 351, 535, 596
BstMCI CGRYCG 1 cut(s) 995
BstMWI GCNNNNNNNGC 2 cut(s) 1073, 1082
BstNI CCWGG 2 cut(s) 71, 877
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 2 cut(s) 69, 875
BstSFI CTRYAG 2 cut(s) 109, 836
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 995
BsuTUI ATCGAT 1 cut(s) 995
BtsCI GGATG 5 cut(s) 328, 406, 885, 1093, 1093
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 3 cut(s) 273, 680, 845
BveI ACCTGC 1 cut(s) 1067
Cac8I GCNNGC 2 cut(s) 7, 830
CaiI CAGNNNCTG 3 cut(s) 15, 876, 1032
CfoI GCGC 3 cut(s) 269, 719, 1093
Cfr13I GGNCC 2 cut(s) 622, 630
ClaI ATCGAT 1 cut(s) 995
CseI GACGC 3 cut(s) 36, 124, 212
Csp6I GTAC 6 cut(s) 13, 287, 334, 571, 803, 989
CviAII CATG 2 cut(s) 377, 951
CviQI GTAC 6 cut(s) 13, 287, 334, 571, 803, 989
DdeI CTNAG 7 cut(s) 164, 423, 481, 576, 636, 909, 920
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 2 cut(s) 622, 630
Eco47III AGCGCT 1 cut(s) 718
Eco57I CTGAAG 3 cut(s) 587, 783, 1062
EcoO109I RGGNCCY 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 69, 875
EcoT14I CCWWGG 1 cut(s) 626
EcoT22I ATGCAT 1 cut(s) 885
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 2 cut(s) 380, 954
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 1 cut(s) 608
FatI CATG 2 cut(s) 376, 950
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 5 cut(s) 335, 413, 892, 1080, 1100
Fsp4HI GCNGC 1 cut(s) 265
FspAI RTGCGCAY 1 cut(s) 1092
FspBI CTAG 4 cut(s) 309, 612, 627, 1073
FspI TGCGCA 1 cut(s) 1092
GlaI GCGC 3 cut(s) 268, 718, 1092
GluI GCNGC 1 cut(s) 265
GsuI CTGGAG 3 cut(s) 53, 273, 948
HaeII RGCGCY 2 cut(s) 270, 720
HgaI GACGC 3 cut(s) 36, 124, 212
HhaI GCGC 3 cut(s) 269, 719, 1093
Hin1I GRCGYC 2 cut(s) 47, 223
Hin1II CATG 2 cut(s) 380, 954
Hin6I GCGC 3 cut(s) 267, 717, 1091
HinP1I GCGC 3 cut(s) 267, 717, 1091
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 4 cut(s) 149, 296, 312, 547
HphI GGTGA 2 cut(s) 556, 1091
Hpy166II GTNNAC 2 cut(s) 446, 932
Hpy188I TCNGA 8 cut(s) 140, 228, 517, 535, 567, 579, 763, 921
Hpy188III TCNNGA 4 cut(s) 252, 722, 743, 1033
Hpy8I GTNNAC 2 cut(s) 446, 932
Hpy99I CGWCG 3 cut(s) 52, 140, 173
HpyAV CCTTC 4 cut(s) 103, 349, 574, 998
HpyCH4III ACNGT 4 cut(s) 277, 684, 1019, 1028
HpyCH4V TGCA 5 cut(s) 389, 557, 698, 838, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 1073, 1082
HpyF3I CTNAG 7 cut(s) 164, 423, 481, 576, 636, 909, 920
Hsp92I GRCGYC 2 cut(s) 47, 223
Hsp92II CATG 2 cut(s) 380, 954
HspAI GCGC 3 cut(s) 267, 717, 1091
LmnI GCTCC 4 cut(s) 235, 878, 967, 1058
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 4 cut(s) 870, 1072, 1078, 1102
MaeI CTAG 4 cut(s) 309, 612, 627, 1073
MaeIII GTNAC 4 cut(s) 544, 676, 854, 967
MbiI CCGCTC 1 cut(s) 106
MboII GAAGA 5 cut(s) 146, 256, 662, 994, 1055
MluCI AATT 5 cut(s) 502, 703, 738, 797, 817
MlyI GAGTC 1 cut(s) 541
MmeI TCCRAC 3 cut(s) 118, 210, 771
Mph1103I ATGCAT 1 cut(s) 885
MseI TTAA 4 cut(s) 179, 450, 821, 1110
MslI CAYNNNNRTG 2 cut(s) 888, 1098
MspR9I CCNGG 2 cut(s) 71, 877
Mva1269I GAATGC 2 cut(s) 88, 372
MvaI CCWGG 2 cut(s) 71, 877
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 1073, 1082
NlaIII CATG 2 cut(s) 380, 954
NlaIV GGNNCC 3 cut(s) 62, 142, 624
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 544
NsbI TGCGCA 1 cut(s) 1092
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 1 cut(s) 954
NspV TTCGAA 1 cut(s) 750
PaqCI CACCTGC 1 cut(s) 1067
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 2 cut(s) 88, 372
PfeI GAWTC 3 cut(s) 149, 296, 312
PflFI GACNNNGTC 1 cut(s) 343
PfoI TCCNGGA 2 cut(s) 69, 875
PkrI GCNGC 1 cut(s) 266
Ple19I CGATCG 1 cut(s) 995
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PpuMI RGGWCCY 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 2 cut(s) 69, 875
PspGI CCWGG 2 cut(s) 69, 875
PspN4I GGNNCC 3 cut(s) 62, 142, 624
PspPI GGNCC 2 cut(s) 622, 630
PspPPI RGGWCCY 1 cut(s) 630
PstI CTGCAG 1 cut(s) 840
PstNI CAGNNNCTG 3 cut(s) 15, 876, 1032
PsyI GACNNNGTC 1 cut(s) 343
PvuI CGATCG 1 cut(s) 995
RsaI GTAC 6 cut(s) 14, 288, 335, 572, 804, 990
RsaNI GTAC 6 cut(s) 13, 287, 334, 571, 803, 989
RseI CAYNNNNRTG 2 cut(s) 888, 1098
SaqAI TTAA 4 cut(s) 179, 450, 821, 1110
SatI GCNGC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 622, 630
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 71, 877
SfaNI GCATC 4 cut(s) 870, 1072, 1078, 1102
SfcI CTRYAG 2 cut(s) 109, 836
SfuI TTCGAA 1 cut(s) 750
SinI GGWCC 2 cut(s) 622, 630
SmiMI CAYNNNNRTG 2 cut(s) 888, 1098
SmlI CTYRAG 2 cut(s) 239, 407
SmoI CTYRAG 2 cut(s) 239, 407
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 5 cut(s) 502, 703, 738, 797, 817
SsiI CCGC 6 cut(s) 64, 104, 133, 439, 474, 1085
SspMI CTAG 4 cut(s) 309, 612, 627, 1073
StyD4I CCNGG 2 cut(s) 69, 875
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 4 cut(s) 277, 684, 1019, 1028
TaqI TCGA 7 cut(s) 96, 147, 231, 279, 396, 750, 995
TasI AATT 5 cut(s) 502, 703, 738, 797, 817
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 3 cut(s) 149, 296, 312
Tru1I TTAA 4 cut(s) 179, 450, 821, 1110
Tru9I TTAA 4 cut(s) 179, 450, 821, 1110
TscAI CASTG 3 cut(s) 280, 687, 845
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 6 cut(s) 288, 339, 365, 672, 1062, 1095
TspGWI ACGGA 2 cut(s) 479, 1086
TspRI CASTG 3 cut(s) 280, 687, 845
Tth111I GACNNNGTC 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 622, 630
XapI RAATTY 2 cut(s) 738, 817
XceI RCATGY 1 cut(s) 954
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 4 cut(s) 309, 612, 627, 1073
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.