Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Forward (+)

27056743 .. 27061592

Gene Structure 4850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G312200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGAGCAGGTATTGGGTGGTGTCTCTGCCGGTCCAAAACTCGGCGTCGTCTCTATGGAACCGTCTCCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCCCTCTACAGATTCAATATTCCTAATCTCCGTGTTGGAACCCTGGATTCTCTTCTCTCCCTCAGCGACGATCTCTTGAAGTCAAACAACTTTGTAGAGGGTGTTTCTCACAAGATCAGGCGCCAGATCGAGGAACTGGAGAGGGTTTCAGGCGTGGAGAGCAGCGCACTCACTGTCGATGGTGTACCTGTTGATTCATACCTTACTAGGTTCGTTTGGGATGAAGCCAAGTACCCTACAATGTCGCCTTTGAAGGAGGTCGTAGACAGCATTCATGGTCAAGTCGCAAAGATTGAGGATGATCTCAAGGTTCGTGTAGCTGAGTATAACAACGTCCGCAGTCAACTTAATGCTATCAACAGAAAGCAGAGTGGAAGCTTAGCAGTCCGTGATCTTTCCAATTTAGTGAAACCAGAGGACATCGTTACCTCAGAACATCTAGTGACCCTCCTTGCAGTTGTTCCCAAGTATTCTCAGAAGGATTGGCTATCAAGCTATGAGACCTTGACTAACTATGTGGTCCCTAGGTCCTCTAAGAAGTTATTTGAAGATAATGAATATGCACTTTACACTGTAACACTGTTCAATCGGGTTGCAGATAATTTTAGAACAAGTGCTCGTGAAAAGGGGTTCCAAATTCGTGATTTCGAATACAGTTCTGAAGCACAAGAAAGTCGAAAGCAGGAGTTGGAAAAATTGGTGCAAGACCAAGAAAATTTAAGAAGCTCCCTTTTGCAGTGGTGCTATGCCAGTTACGGAGAGGTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATTCTGAGATATGGTTTACCACCATCTTTCTTGGCATGTGTCTTAGCTCCGACTACAAAAAGTGAGAAGAAAGTACGTTCAATCCTTGAAGGGTTGTGCGATAGTGGTAACAGTACCTTCTGGAAAACTGACGATGAAGTTGGGGGAGGGATGGCTGGTCTAGCAGGCGATGCAGATGCACATCCATATGTTTCATTCACAATCAATCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

377

Amino Acids

42.56

Weight (kDa)

5.55

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	738, 817
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	2 cut(s)	47, 223
AfaI	GTAC	5 cut(s)	288, 335, 897, 990, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	43, 70, 232
AflIII	ACRYGT	1 cut(s)	898
AgsI	TTSAA	7 cut(s)	118, 181, 355, 650, 688, 996, 1004
AjnI	CCWGG	3 cut(s)	69, 144, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	422, 480, 597, 828, 873, 962
AluI	AGCT	6 cut(s)	422, 480, 597, 828, 873, 962
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	4 cut(s)	30, 57, 71, 596
AlwNI	CAGNNNCTG	1 cut(s)	876
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	2 cut(s)	738, 817
AspA2I	CCTAGG	1 cut(s)	626
AspLEI	GCGC	2 cut(s)	225, 269
AspS9I	GGNCC	3 cut(s)	34, 622, 630
AsuII	TTCGAA	1 cut(s)	750
AvaII	GGWCC	3 cut(s)	34, 622, 630
AvrII	CCTAGG	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	721
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	3 cut(s)	275, 946, 1060
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciT130I	CCWGG	3 cut(s)	71, 146, 877
BcoDI	GTCTC	4 cut(s)	30, 57, 71, 596
BfaI	CTAG	4 cut(s)	309, 542, 627, 1076
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	1 cut(s)	265
BlnI	CCTAGG	1 cut(s)	626
BlpI	GCTNAGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	71, 146, 877
Bme18I	GGWCC	3 cut(s)	34, 622, 630
BmgT120I	GGNCC	3 cut(s)	34, 622, 630
BmiI	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
BmrFI	CCNGG	3 cut(s)	71, 146, 877
BmsI	GCATC	3 cut(s)	870, 1075, 1081
BpmI	CTGGAG	2 cut(s)	53, 260
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaHI	GRCGYC	2 cut(s)	47, 223
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	144, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 70, 232
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	243, 852
Bse8I	GATNNNNATC	1 cut(s)	1095
BseBI	CCWGG	3 cut(s)	71, 146, 877
BseDI	CCNNGG	2 cut(s)	144, 626
BseGI	GGATG	5 cut(s)	328, 406, 885, 1071, 1096
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	3 cut(s)	43, 70, 232
BseMII	CTCAG	5 cut(s)	178, 414, 546, 590, 911
BseNI	ACTGG	2 cut(s)	243, 852
BseXI	GCAGC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	43, 70, 232
BsmAI	GTCTC	4 cut(s)	30, 57, 71, 596
BsmBI	CGTCTC	2 cut(s)	57, 71
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	2 cut(s)	88, 372
Bso31I	GGTCTC	1 cut(s)	596
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	172, 216, 228, 403, 493
Bsp1720I	GCTNAGC	1 cut(s)	481
BspACI	CCGC	1 cut(s)	439
BspCNI	CTCAG	5 cut(s)	177, 415, 545, 589, 912
BspLI	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
BspT104I	TTCGAA	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	243, 852
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	144, 626
BssMI	GATC	5 cut(s)	172, 216, 228, 403, 493
BssNI	GRCGYC	2 cut(s)	47, 223
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	626
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	71, 146, 877
Bst4CI	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1028
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	47, 223
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstBAI	YACGTR	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	7, 1081
BstDEI	CTNAG	8 cut(s)	164, 423, 481, 532, 576, 636, 920, 958
BstF5I	GGATG	5 cut(s)	328, 406, 885, 1071, 1096
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	225, 269
BstKTI	GATC	5 cut(s)	175, 219, 231, 406, 496
BstMAI	GTCTC	4 cut(s)	30, 57, 71, 596
BstMBI	GATC	5 cut(s)	172, 216, 228, 403, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 1076, 1085
BstNI	CCWGG	3 cut(s)	71, 146, 877
BstNSI	RCATGY	1 cut(s)	954
BstSCI	CCNGG	3 cut(s)	69, 144, 875
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	1098
BtsCI	GGATG	5 cut(s)	328, 406, 885, 1071, 1096
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	4 cut(s)	273, 672, 680, 845
Cac8I	GCNNGC	2 cut(s)	7, 1081
CaiI	CAGNNNCTG	1 cut(s)	876
CfoI	GCGC	2 cut(s)	225, 269
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	34, 622, 630
CseI	GACGC	1 cut(s)	36
Csp6I	GTAC	5 cut(s)	287, 334, 896, 989, 1029
CviAII	CATG	2 cut(s)	377, 951
CviJI	RGCY	9 cut(s)	329, 422, 480, 589, 597, 828, 873, 962, 1070
CviKI_1	RGCY	9 cut(s)	329, 422, 480, 589, 597, 828, 873, 962, 1070
CviQI	GTAC	5 cut(s)	287, 334, 896, 989, 1029
DdeI	CTNAG	8 cut(s)	164, 423, 481, 532, 576, 636, 920, 958
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	5 cut(s)	174, 218, 230, 405, 495
DpnII	GATC	5 cut(s)	172, 216, 228, 403, 493
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	596
Eco47I	GGWCC	3 cut(s)	34, 622, 630
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	69, 144, 875
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	885
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	626
Esp3I	CGTCTC	2 cut(s)	57, 71
FaeI	CATG	2 cut(s)	380, 954
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	2 cut(s)	376, 950
FauNDI	CATATG	1 cut(s)	1102
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	5 cut(s)	335, 413, 892, 1078, 1083
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	4 cut(s)	309, 542, 627, 1076
GlaI	GCGC	2 cut(s)	224, 268
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	53, 260
HaeII	RGCGCY	1 cut(s)	226
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	225, 269
Hin1I	GRCGYC	2 cut(s)	47, 223
Hin1II	CATG	2 cut(s)	380, 954
Hin6I	GCGC	2 cut(s)	223, 267
HinP1I	GCGC	2 cut(s)	223, 267
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	3 cut(s)	114, 149, 296
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	4 cut(s)	287, 367, 446, 932
Hpy188I	TCNGA	5 cut(s)	535, 579, 763, 921, 966
Hpy188III	TCNNGA	4 cut(s)	178, 722, 743, 1036
Hpy8I	GTNNAC	4 cut(s)	287, 367, 446, 932
Hpy99I	CGWCG	2 cut(s)	52, 173
HpyAV	CCTTC	5 cut(s)	103, 349, 574, 998, 1042
HpyCH4III	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1028
HpyCH4IV	ACGT	3 cut(s)	435, 898, 991
HpyCH4V	TGCA	9 cut(s)	557, 665, 698, 805, 838, 883, 908, 1088, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 1076, 1085
HpyF3I	CTNAG	8 cut(s)	164, 423, 481, 532, 576, 636, 920, 958
HpySE526I	ACGT	3 cut(s)	435, 898, 991
Hsp92I	GRCGYC	2 cut(s)	47, 223
Hsp92II	CATG	2 cut(s)	380, 954
HspAI	GCGC	2 cut(s)	223, 267
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	172, 216, 228, 403, 493
LmnI	GCTCC	3 cut(s)	833, 878, 967
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	3 cut(s)	870, 1075, 1081
MaeI	CTAG	4 cut(s)	309, 542, 627, 1076
MaeII	ACGT	3 cut(s)	435, 898, 991
MaeIII	GTNAC	5 cut(s)	526, 544, 676, 854, 1022
MalI	GATC	5 cut(s)	174, 218, 230, 405, 495
MboI	GATC	5 cut(s)	172, 216, 228, 403, 493
MboII	GAAGA	3 cut(s)	146, 662, 994
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	5 cut(s)	502, 703, 738, 797, 817
Mly113I	GGCGCC	1 cut(s)	223
MmeI	TCCRAC	3 cut(s)	118, 771, 989
Mph1103I	ATGCAT	1 cut(s)	885
MseI	TTAA	2 cut(s)	450, 821
MslI	CAYNNNNRTG	2 cut(s)	888, 1101
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	71, 146, 877
Mva1269I	GAATGC	2 cut(s)	88, 372
MvaI	CCWGG	3 cut(s)	71, 146, 877
MwoI	GCNNNNNNNGC	3 cut(s)	261, 1076, 1085
NarI	GGCGCC	1 cut(s)	223
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	5 cut(s)	172, 216, 228, 403, 493
NlaIII	CATG	2 cut(s)	380, 954
NlaIV	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	544
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	1 cut(s)	954
NspV	TTCGAA	1 cut(s)	750
PctI	GAATGC	2 cut(s)	88, 372
PfeI	GAWTC	3 cut(s)	114, 149, 296
PfoI	TCCNGGA	2 cut(s)	69, 875
PkrI	GCNGC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	899
PpuMI	RGGWCCY	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	3 cut(s)	69, 144, 875
PspGI	CCWGG	3 cut(s)	69, 144, 875
PspN4I	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
PspPI	GGNCC	3 cut(s)	34, 622, 630
PspPPI	RGGWCCY	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	876
RsaI	GTAC	5 cut(s)	288, 335, 897, 990, 1030
RsaNI	GTAC	5 cut(s)	287, 334, 896, 989, 1029
RseI	CAYNNNNRTG	2 cut(s)	888, 1101
SaqAI	TTAA	2 cut(s)	450, 821
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	5 cut(s)	172, 216, 228, 403, 493
Sau96I	GGNCC	3 cut(s)	34, 622, 630
ScrFI	CCNGG	3 cut(s)	71, 146, 877
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	3 cut(s)	870, 1075, 1081
SfcI	CTRYAG	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	750
SinI	GGWCC	3 cut(s)	34, 622, 630
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1101
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	5 cut(s)	502, 703, 738, 797, 817
SsiI	CCGC	1 cut(s)	439
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	4 cut(s)	309, 542, 627, 1076
StyD4I	CCNGG	3 cut(s)	69, 144, 875
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	6 cut(s)	65, 277, 676, 684, 758, 1028
TaiI	ACGT	3 cut(s)	438, 901, 994
TaqI	TCGA	5 cut(s)	96, 231, 279, 750, 778
TasI	AATT	5 cut(s)	502, 703, 738, 797, 817
TfiI	GAWTC	3 cut(s)	114, 149, 296
Tru1I	TTAA	2 cut(s)	450, 821
Tru9I	TTAA	2 cut(s)	450, 821
TscAI	CASTG	4 cut(s)	280, 679, 687, 845
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	6 cut(s)	288, 339, 365, 672, 1065, 1098
TspGWI	ACGGA	3 cut(s)	122, 479, 873
TspRI	CASTG	4 cut(s)	280, 679, 687, 845
VpaK11BI	GGWCC	3 cut(s)	34, 622, 630
XapI	RAATTY	2 cut(s)	738, 817
XceI	RCATGY	1 cut(s)	954
XmaJI	CCTAGG	1 cut(s)	626
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	4 cut(s)	309, 542, 627, 1076
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.