Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035399.1

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2292

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

cgcctccaggatcaaatctccaagcattccttcgacactcccctctacagattcaatattcccaatctccgcgtcggaaccctcgattctcttctctccctcagcgacgatctcttaaagtccaacaacttcgtagagggtgtttctcacaagatccggcgccagatcgaggagctagagagggtttctggagtcgagagcagctctctcaccgtcgatggagttccagtggattcatacctcactaggttcgtttgggatgaagctaagttcccgacaatgtctcctttgaaggaggtcatcgacagcattcatggtcaagttgcaaagatcgaggatgatctcaaggttcgggtagctgagtatagcaatgttcgcagtcaacttaatgctatcaaccgaaagcagagcggaagcttagcagtccgtgatctttccaatttagtgaaatcagaggacatcgttgtctcggaacatctggtgaccctccttgcaattgttcccaagtactctcagaaggattggctgtcaagctatgagaccttgactagttatgtggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

187

Amino Acids

21.14

Weight (kDa)

5.6

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	411
AccII	CGCG	1 cut(s)	72
AciI	CCGC	2 cut(s)	70, 411
AclWI	GGATC	2 cut(s)	18, 148
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	55, 292
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	6
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	6 cut(s)	175, 204, 266, 359, 417, 534
AluI	AGCT	6 cut(s)	175, 204, 266, 359, 417, 534
Alw26I	GTCTC	3 cut(s)	288, 472, 533
AlwI	GGATC	2 cut(s)	18, 148
ApeKI	GCWGC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	202, 493
BanI	GGYRCC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	8
BcoDI	GTCTC	3 cut(s)	288, 472, 533
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	176, 246, 549
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	79, 161
BmrFI	CCNGG	1 cut(s)	8
BplI	GAGNNNNNCTC	4 cut(s)	188, 220, 190, 222
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	533
BsaXI	ACNNNNNCTCC	4 cut(s)	213, 243, 268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	265, 343
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	115, 351, 527
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	288, 472, 533
BsmI	GAATGC	2 cut(s)	25, 309
Bso31I	GGTCTC	1 cut(s)	533
Bsp143I	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
Bsp1720I	GCTNAGC	1 cut(s)	418
BspACI	CCGC	2 cut(s)	70, 411
BspCNI	CTCAG	3 cut(s)	114, 352, 526
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	79, 161
BspPI	GGATC	2 cut(s)	18, 148
BspT107I	GGYRCC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
BssNI	GRCGYC	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	101, 267, 360, 418, 513
BstEII	GGTNACC	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	265, 343
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	7 cut(s)	13, 112, 156, 168, 333, 343, 433
BstMAI	GTCTC	3 cut(s)	288, 472, 533
BstMBI	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	8
BstPI	GGTNACC	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	265, 343
BtsIMutI	CAGTG	1 cut(s)	234
CfoI	GCGC	1 cut(s)	162
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	7 cut(s)	175, 204, 266, 359, 417, 526, 534
CviKI_1	RGCY	7 cut(s)	175, 204, 266, 359, 417, 526, 534
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	5 cut(s)	101, 267, 360, 418, 513
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	7 cut(s)	12, 111, 155, 167, 332, 342, 432
DpnII	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
FaeI	CATG	1 cut(s)	317
FaiI	YATR	6 cut(s)	238, 315, 366, 537, 555, 562
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	2 cut(s)	272, 350
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	3 cut(s)	176, 246, 549
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	4 cut(s)	51, 86, 192, 233
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	202, 493
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	77, 454, 472, 516
Hpy188III	TCNNGA	3 cut(s)	189, 196, 274
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	3 cut(s)	77, 110, 218
HpyAV	CCTTC	3 cut(s)	40, 286, 511
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	326, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	5 cut(s)	101, 267, 360, 418, 513
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	160
KasI	GGCGCC	1 cut(s)	159
Kzo9I	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	20, 170, 174, 176, 240, 464
Lsp1109I	GCAGC	1 cut(s)	213
MaeI	CTAG	3 cut(s)	176, 246, 549
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	7 cut(s)	12, 111, 155, 167, 332, 342, 432
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	2 cut(s)	439, 495
Mly113I	GGCGCC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	201
MmeI	TCCRAC	2 cut(s)	55, 147
MseI	TTAA	2 cut(s)	116, 387
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	25, 309
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	375
NarI	GGCGCC	1 cut(s)	160
NdeII	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	79, 161
NmuCI	GTSAC	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	2 cut(s)	25, 309
PfeI	GAWTC	3 cut(s)	51, 86, 233
PflFI	GACNNNGTC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	6
PspEI	GGTNACC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	79, 161
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	280
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	2 cut(s)	116, 387
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	7 cut(s)	10, 109, 153, 165, 330, 340, 430
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	8
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	2 cut(s)	439, 495
SsiI	CCGC	2 cut(s)	70, 411
SspDI	GGCGCC	1 cut(s)	159
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	3 cut(s)	176, 246, 549
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	7 cut(s)	33, 84, 168, 195, 216, 303, 333
TasI	AATT	2 cut(s)	439, 495
TatI	WGTACW	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	51, 86, 233
Tru1I	TTAA	2 cut(s)	116, 387
Tru9I	TTAA	2 cut(s)	116, 387
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	225, 276, 302
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	234
Tth111I	GACNNNGTC	1 cut(s)	280
XspI	CTAG	3 cut(s)	176, 246, 549
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.