Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Forward (+)

71531231 .. 71532178

Gene Structure 948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0593500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCCTAGTTCAGCGAAGATTCATATTTGGAGGGTTTGTCATAACATTTTCCCTTCAAGGGAAAGATTATTGTCTAGAAGAGTGCCTTTGGAAACACAGGTTTGTGTTCTTTGTGAAAGTGCAACTGAGACATCTTTGCACATTTGTCGTGATTGTCCTTTTACAAAACAAGTTTTACAGGGTAATGGTGTGTTGGTTCAAACTTGTTTCAGTCCACAAGCTTTGAATTGTGACTTGCTAGGGTGGTTGAGCATTTGTGTTCATGCTTTATCTTTAAAGGACTTGGGGGATCTTCTGTTTCTTTTGTGGAGTGTGTGGAAGGAAAGAAATAGTAGAGTATGGGATGATAGGAAAGGTCAACCTTGGGATGTTCTGCTTAAGGCTACTACAAGATTACAGGATTTCTGTTTTCATAATACTAGGCCGACCTTGAGGGAGACTGGCAGCTCAAGATTGGCTCGGTGGCGGGCTCCATCAGTGGGTCTCTATAAAATTAATGTGGATGGCAGTTTTGATCATGTCTCAAGAAAATGTAGCGCTGGTTTTGTGGTGCTTGATTGCAATGGCACAATGATAGCAGGAGGAGGGAAACCGCTGAGTGGTTTGCTTTCAGCTGAACATGCAGAAGCCTTGGCATGTAAACTAGCTTTTGACTTTGTCTTGGATCAGGTTTTGGTATCGGCCATCGTGGAGACTGACTCTCAGCTTGTGCAGCAGCAATTGTGCAGGTCTGAGGGGAATTTCTCACAGCTTGGGCGGCTTTATGATGATTTGGACTCCATTTTGAGAGCTCACTCTAATTTGAAGGTAGTTTATATCAGAATAGGTGCTAATAAAGCAGCGCATCTGATGGCTGCATTTGCTAGTTCGTTATCTCAAGAATGTTTTTATTTTTCTCCTCCTCCCTTTCTGCTTGCTGTTATTGCAGCTGAGCAAGACCATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

315

Amino Acids

35.12

Weight (kDa)

7.93

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	2 - 58	2.2e-08	zinc-binding in reverse transcriptase
RVT_3	PF13456	166 - 287	7.1e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	717
AciI	CCGC	3 cut(s)	466, 593, 757
AclWI	GGATC	2 cut(s)	297, 672
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	58, 479, 599
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	57, 200, 226, 805
AluBI	AGCT	8 cut(s)	221, 447, 614, 647, 706, 751, 791, 929
AluI	AGCT	8 cut(s)	221, 447, 614, 647, 706, 751, 791, 929
Alw21I	GWGCWC	1 cut(s)	793
Alw26I	GTCTC	5 cut(s)	122, 431, 488, 526, 686
AlwI	GGATC	2 cut(s)	297, 672
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	2 cut(s)	422, 681
ApeKI	GCWGC	6 cut(s)	444, 712, 715, 839, 854, 926
ApoI	RAATTY	1 cut(s)	739
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	2 cut(s)	539, 844
BanII	GRGCYC	2 cut(s)	472, 793
Bbv12I	GWGCWC	1 cut(s)	793
BbvI	GCAGC	6 cut(s)	456, 724, 727, 841, 851, 938
BccI	CCATC	4 cut(s)	481, 497, 692, 844
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	5 cut(s)	122, 431, 488, 526, 686
BfaI	CTAG	6 cut(s)	6, 75, 239, 420, 644, 864
BfoI	RGCGCY	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	717
BisI	GCNGC	7 cut(s)	445, 713, 716, 758, 840, 855, 927
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	7 cut(s)	446, 714, 717, 759, 841, 856, 928
BmiI	GGNNCC	1 cut(s)	471
BmsI	GCATC	1 cut(s)	853
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	4 cut(s)	433, 451, 508, 861
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	362, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 479, 599
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	362, 630
BseGI	GGATG	3 cut(s)	349, 373, 508
BseLI	CCNNNNNNNGG	3 cut(s)	58, 479, 599
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	5 cut(s)	117, 587, 716, 723, 921
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	3 cut(s)	597, 888, 891
BseXI	GCAGC	6 cut(s)	456, 724, 727, 841, 851, 938
BsgI	GTGCAG	2 cut(s)	731, 745
BshFI	GGCC	2 cut(s)	424, 683
BsiHKAI	GWGCWC	1 cut(s)	793
BslI	CCNNNNNNNGG	3 cut(s)	58, 479, 599
BsmAI	GTCTC	5 cut(s)	122, 431, 488, 526, 686
BsnI	GGCC	2 cut(s)	424, 683
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	472, 793
Bsp143I	GATC	3 cut(s)	289, 514, 664
Bsp1720I	GCTNAGC	1 cut(s)	930
BspACI	CCGC	3 cut(s)	466, 593, 757
BspANI	GGCC	2 cut(s)	424, 683
BspCNI	CTCAG	5 cut(s)	118, 588, 715, 724, 922
BspLI	GGNNCC	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	717
BspPI	GGATC	2 cut(s)	297, 672
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	362, 630
BssMI	GATC	3 cut(s)	289, 514, 664
BssT1I	CCWWGG	2 cut(s)	362, 630
Bst6I	CTCTTC	1 cut(s)	73
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	468, 915
BstDEI	CTNAG	5 cut(s)	126, 596, 702, 732, 930
BstF5I	GGATG	3 cut(s)	349, 373, 508
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	539, 844
BstKTI	GATC	3 cut(s)	292, 517, 667
BstMAI	GTCTC	5 cut(s)	122, 431, 488, 526, 686
BstMBI	GATC	3 cut(s)	289, 514, 664
BstMWI	GCNNNNNNNGC	6 cut(s)	620, 712, 757, 836, 860, 923
BstNSI	RCATGY	2 cut(s)	623, 639
BstV1I	GCAGC	6 cut(s)	456, 724, 727, 841, 851, 938
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	424, 683
BtsCI	GGATG	3 cut(s)	349, 373, 508
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	717
Cac8I	GCNNGC	2 cut(s)	468, 915
CfoI	GCGC	2 cut(s)	539, 844
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	4 cut(s)	263, 518, 620, 636
DdeI	CTNAG	5 cut(s)	126, 596, 702, 732, 930
DpnI	GATC	3 cut(s)	291, 516, 666
DpnII	GATC	3 cut(s)	289, 514, 664
DraI	TTTAAA	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	791
Eco130I	CCWWGG	2 cut(s)	362, 630
Eco24I	GRGCYC	2 cut(s)	472, 793
Eco31I	GGTCTC	1 cut(s)	488
Eco47III	AGCGCT	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	791
EcoT14I	CCWWGG	2 cut(s)	362, 630
EcoT38I	GRGCYC	2 cut(s)	472, 793
ErhI	CCWWGG	2 cut(s)	362, 630
FaeI	CATG	4 cut(s)	266, 521, 623, 639
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	4 cut(s)	262, 517, 619, 635
FauI	CCCGC	1 cut(s)	459
FauNDI	CATATG	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	7 cut(s)	445, 713, 716, 758, 840, 855, 927
FokI	GGATG	3 cut(s)	356, 380, 515
FriOI	GRGCYC	2 cut(s)	472, 793
Fsp4HI	GCNGC	7 cut(s)	445, 713, 716, 758, 840, 855, 927
FspBI	CTAG	6 cut(s)	6, 75, 239, 420, 644, 864
GlaI	GCGC	2 cut(s)	538, 843
GluI	GCNGC	7 cut(s)	445, 713, 716, 758, 840, 855, 927
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	2 cut(s)	424, 683
HhaI	GCGC	2 cut(s)	539, 844
Hin1II	CATG	4 cut(s)	266, 521, 623, 639
Hin6I	GCGC	2 cut(s)	537, 842
HinP1I	GCGC	2 cut(s)	537, 842
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	19, 698, 776
Hpy166II	GTNNAC	3 cut(s)	215, 359, 641
Hpy188I	TCNGA	3 cut(s)	733, 821, 849
Hpy188III	TCNNGA	5 cut(s)	75, 149, 450, 525, 878
Hpy8I	GTNNAC	3 cut(s)	215, 359, 641
HpyAV	CCTTC	3 cut(s)	63, 313, 799
HpyCH4V	TGCA	8 cut(s)	122, 139, 561, 623, 712, 726, 857, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	620, 712, 757, 836, 860, 923
HpyF3I	CTNAG	5 cut(s)	126, 596, 702, 732, 930
Hsp92II	CATG	4 cut(s)	266, 521, 623, 639
HspAI	GCGC	2 cut(s)	537, 842
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	289, 514, 664
LmnI	GCTCC	1 cut(s)	475
LpnPI	CCDG	8 cut(s)	83, 164, 383, 426, 525, 564, 653, 712
Lsp1109I	GCAGC	6 cut(s)	456, 724, 727, 841, 851, 938
LweI	GCATC	1 cut(s)	853
MaeI	CTAG	6 cut(s)	6, 75, 239, 420, 644, 864
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	3 cut(s)	291, 516, 666
MboI	GATC	3 cut(s)	289, 514, 664
MboII	GAAGA	3 cut(s)	28, 90, 284
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	472, 793
MluCI	AATT	5 cut(s)	226, 492, 719, 739, 799
MlyI	GAGTC	2 cut(s)	692, 770
MnlI	CCTC	7 cut(s)	24, 426, 575, 578, 727, 909, 912
MseI	TTAA	3 cut(s)	275, 378, 495
MspA1I	CMGCKG	3 cut(s)	595, 614, 929
MspCI	CTTAAG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	719
MwoI	GCNNNNNNNGC	6 cut(s)	620, 712, 757, 836, 860, 923
NdeI	CATATG	1 cut(s)	942
NdeII	GATC	3 cut(s)	289, 514, 664
NlaIII	CATG	4 cut(s)	266, 521, 623, 639
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	623, 639
PfeI	GAWTC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	7 cut(s)	446, 714, 717, 759, 841, 856, 928
PleI	GAGTC	2 cut(s)	692, 770
PpsI	GAGTC	2 cut(s)	692, 770
PshBI	ATTAAT	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	793
PspN4I	GGNNCC	1 cut(s)	471
PsuI	RGATCY	1 cut(s)	289
PsyI	GACNNNGTC	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	614, 929
SacI	GAGCTC	1 cut(s)	793
SaqAI	TTAA	3 cut(s)	275, 378, 495
SatI	GCNGC	7 cut(s)	445, 713, 716, 758, 840, 855, 927
Sau3AI	GATC	3 cut(s)	289, 514, 664
SchI	GAGTC	2 cut(s)	692, 770
SduI	GDGCHC	2 cut(s)	472, 793
SfaNI	GCATC	1 cut(s)	853
SmlI	CTYRAG	5 cut(s)	377, 430, 448, 523, 876
SmoI	CTYRAG	5 cut(s)	377, 430, 448, 523, 876
Sse9I	AATT	5 cut(s)	226, 492, 719, 739, 799
SsiI	CCGC	3 cut(s)	466, 593, 757
SspMI	CTAG	6 cut(s)	6, 75, 239, 420, 644, 864
SstI	GAGCTC	1 cut(s)	793
StyI	CCWWGG	2 cut(s)	362, 630
TasI	AATT	5 cut(s)	226, 492, 719, 739, 799
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	275, 378, 495
Tru9I	TTAA	3 cut(s)	275, 378, 495
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	6 cut(s)	444, 712, 715, 839, 854, 926
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	11, 251, 401
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	656
Vha464I	CTTAAG	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	1 cut(s)	739
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	2 cut(s)	623, 639
XspI	CTAG	6 cut(s)	6, 75, 239, 420, 644, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.