Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010255

Physical Location & Seq

Genomic Coordinates Reverse (-)

371980 .. 375530

Gene Structure 3551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1004500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGAGCAGGTATTGGGTGGTGTCTCTGCCGGTTCAAAACTCGGCGTCGTCTCTATGGAACCGTCTGCAGGAAAAAATCTCCAAGCATTCCTTCGACACTCCCCTCTACAGATTCAATATTCCTAATCTCCGTGTTGGAACCCTGGATTCTCTTCTCTCCCTCAGCGACGATCTCTTGAAGTCCAACAACTTTGTAGAGGGTGTTTCTCATAAGATCAGGCGCCAGATCGAGGAGCTTGAGAGGGTTTCAGGCGTGGAGAGTAGCGCTCTGACTGTCGATGGAGTGCCTGTCGATTCATACCTCACCAGGTTCGTTTGGGATGAAGCCAAGTATCCGACAATGTCGCCTTTGAAGGAAGTGATAGACAGCATACATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGTGTAGCCGAGTATAATAATGTCCGCAGTCAACTAAATGCTATCAATCGAAAGCAGAGTGGAAGCTTAGCAGTTCGTGATCTTTCCAGTTTAGTGAAATCAGAGGACATCATTGTTTCAGAACATCTAGTGACCCTCCTTGCAATTGTTCCCAAGTACTCTCAGAAGGATTGGCTATCAAGCTATGAGACCTTGACTAACTATGTGGTTCCCAGGTCCTCCAAGAAGTTATTTGAAGATAATGAATATGCTCTTTACAGTGTAACACTGTTTAATCGGGTCGCAGATAACTTTAGAACAAGTGCTCGTGAAAAGGGGTTCCAGATTCGTGATTTTGAATACAGTTCTGAAGCACAAGAAAGTCGAAAGCAGGAGTTAGAAAAATTGGTGCAAGACCAAGAAAATTTAAGAGCTTCCCTTTTGCAGTGGTGCTATACCAGTTACGGGGAGGTTTTTAGCTCCTGGATGCATTTTTGTGCTGTACGTGACTTTGCAGAGAGCATTTTGAGATATGGTTTACCACCAAATTTCTTGGCATGCGTGCTAGCCCCTACTACAAAAGCTGAGAAGAAAGTCCGTTCAATCCTTGAAGGATTATGCGACAGTGGCAACAGTACCTTCTGGAAAACTGACGATGAAGCCGGGGGAGGAGTGCCTGGTCTAGCAGGTGATGCGGATGCACATCCATATGTTTCATTCACGATCAATCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

377

Amino Acids

42.55

Weight (kDa)

5.55

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	5 - 369	1.7e-128	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12840
fragaria_vesca	FvH4_6g54180 FvH4_6g54180 FvH4_6g54180
malus_domestica	MD09G1004500.v1.1 MD17G1008500.v1.1
prunus_persica	Prupe.3G312200_v2.0.a1 Prupe.3G312200_v2.0.a1
pyrus_communis	pycom111g00330 pycom17g00350
rosa_chinensis	RchiOBHm_Chr2g0176361
rosa_laevigata	RLG00000022406
rosa_multiflora	Rmu_sc0009140.1_g000001 Rmu_sc0027060.1_g000004 Rmu_sc0035399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076540
rosa_rugosa	Rorug02G0593500
rosa_samantha	Rh2AG672000 Rh2BG683500 Rh2DG697000
rosa_wichuraiana	Rw2G055110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1070
Acc36I	ACCTGC	1 cut(s)	1070
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	2 cut(s)	439, 1088
AcsI	RAATTY	2 cut(s)	817, 940
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	2 cut(s)	47, 223
AfaI	GTAC	3 cut(s)	572, 897, 1030
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
AgsI	TTSAA	8 cut(s)	38, 118, 181, 355, 650, 752, 996, 1004
AjnI	CCWGG	5 cut(s)	144, 308, 626, 875, 1069
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	6 cut(s)	238, 480, 597, 827, 873, 977
AluI	AGCT	6 cut(s)	238, 480, 597, 827, 873, 977
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	3 cut(s)	30, 57, 596
Aor51HI	AGCGCT	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	817, 940
AspLEI	GCGC	2 cut(s)	225, 269
AspS9I	GGNCC	1 cut(s)	630
AsuC2I	CCSGG	1 cut(s)	1057
AsuHPI	GGTGA	2 cut(s)	298, 1094
AsuNHI	GCTAGC	1 cut(s)	958
AvaII	GGWCC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	721
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	5 cut(s)	146, 310, 628, 877, 1071
BciVI	GTATCC	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	1057
BcoDI	GTCTC	3 cut(s)	30, 57, 596
BfaI	CTAG	3 cut(s)	542, 959, 1076
BfmI	CTRYAG	2 cut(s)	68, 109
BfoI	RGCGCY	2 cut(s)	226, 270
BfuAI	ACCTGC	1 cut(s)	1070
BfuI	GTATCC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	481
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	6 cut(s)	146, 310, 628, 877, 1057, 1071
Bme18I	GGWCC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	630
BmiI	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
BmrFI	CCNGG	6 cut(s)	146, 310, 628, 877, 1057, 1071
BmsI	GCATC	3 cut(s)	870, 1075, 1081
BmtI	GCTAGC	1 cut(s)	962
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	2 cut(s)	260, 392
BpuMI	CCSGG	1 cut(s)	1057
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaHI	GRCGYC	2 cut(s)	47, 223
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	3 cut(s)	144, 626, 1056
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 232, 858
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	501, 852
Bse8I	GATNNNNATC	1 cut(s)	1095
BseBI	CCWGG	5 cut(s)	146, 310, 628, 877, 1071
BseDI	CCNNGG	3 cut(s)	144, 626, 1056
BseGI	GGATG	5 cut(s)	328, 406, 885, 1096, 1096
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
BseMII	CTCAG	3 cut(s)	178, 590, 969
BseNI	ACTGG	2 cut(s)	501, 852
BseRI	GAGGAG	2 cut(s)	248, 1077
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	2 cut(s)	32, 1056
BslI	CCNNNNNNNGG	3 cut(s)	70, 232, 858
BsmAI	GTCTC	3 cut(s)	30, 57, 596
BsmBI	CGTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
Bsp1720I	GCTNAGC	1 cut(s)	481
BspACI	CCGC	2 cut(s)	439, 1088
BspCNI	CTCAG	3 cut(s)	177, 589, 970
BspLI	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
BspMAI	CTGCAG	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	1070
BspOI	GCTAGC	1 cut(s)	962
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	596
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	501, 852
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	144, 626, 1056
BssMI	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
BssNI	GRCGYC	2 cut(s)	47, 223
BssSI	CACGAG	1 cut(s)	720
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	5 cut(s)	146, 310, 628, 877, 1071
Bst4CI	ACNGT	7 cut(s)	65, 277, 674, 684, 758, 1019, 1028
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	47, 223
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	4 cut(s)	7, 952, 956, 960
BstDEI	CTNAG	4 cut(s)	164, 481, 576, 978
BstF5I	GGATG	5 cut(s)	328, 406, 885, 1096, 1096
BstH2I	RGCGCY	2 cut(s)	226, 270
BstHHI	GCGC	2 cut(s)	225, 269
BstKTI	GATC	6 cut(s)	175, 219, 231, 406, 496, 1119
BstMAI	GTCTC	3 cut(s)	30, 57, 596
BstMBI	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
BstMWI	GCNNNNNNNGC	2 cut(s)	1020, 1085
BstNI	CCWGG	5 cut(s)	146, 310, 628, 877, 1071
BstNSI	RCATGY	1 cut(s)	954
BstSCI	CCNGG	6 cut(s)	144, 308, 626, 875, 1055, 1069
BstSFI	CTRYAG	2 cut(s)	68, 109
BsuI	GTATCC	1 cut(s)	345
BtsCI	GGATG	5 cut(s)	328, 406, 885, 1096, 1096
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	4 cut(s)	679, 680, 845, 1024
BveI	ACCTGC	1 cut(s)	1070
Cac8I	GCNNGC	4 cut(s)	7, 952, 956, 960
CfoI	GCGC	2 cut(s)	225, 269
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	630
CseI	GACGC	1 cut(s)	36
CsiI	ACCWGGT	1 cut(s)	308
Csp6I	GTAC	3 cut(s)	571, 896, 1029
CviAII	CATG	2 cut(s)	377, 951
CviQI	GTAC	3 cut(s)	571, 896, 1029
DdeI	CTNAG	4 cut(s)	164, 481, 576, 978
DinI	GGCGCC	1 cut(s)	224
DpnI	GATC	6 cut(s)	174, 218, 230, 405, 495, 1118
DpnII	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	630
Eco47III	AGCGCT	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	630
EcoRII	CCWGG	5 cut(s)	144, 308, 626, 875, 1069
EcoT22I	ATGCAT	1 cut(s)	885
EgeI	GGCGCC	1 cut(s)	224
EheI	GGCGCC	1 cut(s)	224
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	380, 954
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	2 cut(s)	376, 950
FauNDI	CATATG	1 cut(s)	1102
FokI	GGATG	5 cut(s)	335, 413, 892, 1083, 1103
FspBI	CTAG	3 cut(s)	542, 959, 1076
GlaI	GCGC	2 cut(s)	224, 268
HaeII	RGCGCY	2 cut(s)	226, 270
HapII	CCGG	2 cut(s)	32, 1056
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	225, 269
Hin1I	GRCGYC	2 cut(s)	47, 223
Hin1II	CATG	2 cut(s)	380, 954
Hin6I	GCGC	2 cut(s)	223, 267
HinP1I	GCGC	2 cut(s)	223, 267
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	4 cut(s)	114, 149, 296, 739
HpaII	CCGG	2 cut(s)	32, 1056
HphI	GGTGA	2 cut(s)	298, 1094
Hpy166II	GTNNAC	2 cut(s)	446, 932
Hpy188I	TCNGA	6 cut(s)	273, 339, 517, 535, 579, 763
Hpy188III	TCNNGA	7 cut(s)	178, 491, 722, 736, 743, 1036, 1114
Hpy8I	GTNNAC	2 cut(s)	446, 932
Hpy99I	CGWCG	2 cut(s)	52, 173
HpyAV	CCTTC	5 cut(s)	103, 349, 574, 998, 1042
HpyCH4III	ACNGT	7 cut(s)	65, 277, 674, 684, 758, 1019, 1028
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	8 cut(s)	70, 389, 557, 805, 838, 883, 908, 1094
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1020, 1085
HpyF3I	CTNAG	4 cut(s)	164, 481, 576, 978
HpySE526I	ACGT	1 cut(s)	898
Hsp92I	GRCGYC	2 cut(s)	47, 223
Hsp92II	CATG	2 cut(s)	380, 954
HspAI	GCGC	2 cut(s)	223, 267
KasI	GGCGCC	1 cut(s)	222
Kzo9I	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
LmnI	GCTCC	2 cut(s)	235, 878
LweI	GCATC	3 cut(s)	870, 1075, 1081
MabI	ACCWGGT	1 cut(s)	308
MaeI	CTAG	3 cut(s)	542, 959, 1076
MaeII	ACGT	1 cut(s)	898
MaeIII	GTNAC	4 cut(s)	544, 676, 854, 899
MalI	GATC	6 cut(s)	174, 218, 230, 405, 495, 1118
MboI	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
MboII	GAAGA	3 cut(s)	146, 662, 994
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	4 cut(s)	558, 797, 817, 940
Mly113I	GGCGCC	1 cut(s)	223
MmeI	TCCRAC	3 cut(s)	118, 210, 362
Mph1103I	ATGCAT	1 cut(s)	885
MseI	TTAA	2 cut(s)	687, 821
MslI	CAYNNNNRTG	2 cut(s)	888, 1101
MspI	CCGG	2 cut(s)	32, 1056
MspR9I	CCNGG	6 cut(s)	146, 310, 628, 877, 1057, 1071
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	5 cut(s)	146, 310, 628, 877, 1071
MwoI	GCNNNNNNNGC	2 cut(s)	1020, 1085
NarI	GGCGCC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	1057
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
NheI	GCTAGC	1 cut(s)	958
NlaIII	CATG	2 cut(s)	380, 954
NlaIV	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
NmeAIII	GCCGAG	2 cut(s)	23, 448
NmuCI	GTSAC	2 cut(s)	544, 899
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	1 cut(s)	954
PaeI	GCATGC	1 cut(s)	954
PaqCI	CACCTGC	1 cut(s)	1070
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	114, 149, 296, 739
PflFI	GACNNNGTC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	875
PluTI	GGCGCC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	899
PpuMI	RGGWCCY	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	630
Psp6I	CCWGG	5 cut(s)	144, 308, 626, 875, 1069
PspGI	CCWGG	5 cut(s)	144, 308, 626, 875, 1069
PspN4I	GGNNCC	5 cut(s)	62, 142, 224, 624, 734
PspPI	GGNCC	1 cut(s)	630
PspPPI	RGGWCCY	1 cut(s)	630
PstI	CTGCAG	1 cut(s)	72
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	3 cut(s)	572, 897, 1030
RsaNI	GTAC	3 cut(s)	571, 896, 1029
RseI	CAYNNNNRTG	2 cut(s)	888, 1101
SaqAI	TTAA	2 cut(s)	687, 821
Sau3AI	GATC	6 cut(s)	172, 216, 228, 403, 493, 1116
Sau96I	GGNCC	1 cut(s)	630
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	6 cut(s)	146, 310, 628, 877, 1057, 1071
SduI	GDGCHC	1 cut(s)	721
SexAI	ACCWGGT	1 cut(s)	308
SfaNI	GCATC	3 cut(s)	870, 1075, 1081
SfcI	CTRYAG	2 cut(s)	68, 109
SfoI	GGCGCC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1101
SmlI	CTYRAG	2 cut(s)	239, 407
SmoI	CTYRAG	2 cut(s)	239, 407
SphI	GCATGC	1 cut(s)	954
Sse9I	AATT	4 cut(s)	558, 797, 817, 940
SsiI	CCGC	2 cut(s)	439, 1088
SspDI	GGCGCC	1 cut(s)	222
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	3 cut(s)	542, 959, 1076
StyD4I	CCNGG	6 cut(s)	144, 308, 626, 875, 1055, 1069
TaaI	ACNGT	7 cut(s)	65, 277, 674, 684, 758, 1019, 1028
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	6 cut(s)	96, 231, 279, 294, 463, 778
TasI	AATT	4 cut(s)	558, 797, 817, 940
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	114, 149, 296, 739
Tru1I	TTAA	2 cut(s)	687, 821
Tru9I	TTAA	2 cut(s)	687, 821
TscAI	CASTG	4 cut(s)	679, 687, 845, 1024
TseFI	GTSAC	2 cut(s)	544, 899
Tsp45I	GTSAC	2 cut(s)	544, 899
TspDTI	ATGAA	5 cut(s)	288, 339, 672, 1065, 1098
TspGWI	ACGGA	2 cut(s)	122, 980
TspRI	CASTG	4 cut(s)	679, 687, 845, 1024
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	630
XapI	RAATTY	2 cut(s)	817, 940
XceI	RCATGY	1 cut(s)	954
XspI	CTAG	3 cut(s)	542, 959, 1076
ZrmI	AGTACT	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.