Rmu_sc0009140.1_g000001

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009140.1
Physical Location & Seq
Forward (+)
1 .. 4082
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009140.1_g000001.1.cds

Sequence Viewer

Length: 1068 bp
cgcctccaggatcaaatctccaagcattccttcgacactcccctctacagattcaatattcccaatctccgcgtcggaaccctcgattctcttctctccctcagcgacgatctcttaaagtccaacaacttcgtagagggtgtttctcacaagatccggcgccagatcgaggagctagagagggtttctggagtcgagagcagctctctcaccgtcgatggagttccagtggattcatacctcactaggttcgtttgggatgaagctaagttcccgacaatgtctcctttgaaggaggtcatcgacagcattcatggtcaagttgcaaagatcgaggatgatctcaaggttcgggtagctgagtatagcaatgttcgcagtcaacttaatgctatcaaccgaaagcagagcggaagcttagcagtccgtgatctttccaatttagtgaaatcagaggacatcgttgtctcggaacatctggtgaccctccttgcaattgttcccaagtactctcagaaggattggctgtcaagctatgagacgttgactagttatgtggtccctaggtcctctaagaagttatttgaagataacgaatatgctctttacagtgtaacactgtttggtcgagttgcagataattttagaacaagcgctcgtgaaaagggattccaaattcgtgattttgaatatagttctgacgcacaagaaagtcgaaagcaggagttggaaaaattggtacaagaccaagaaaatttaagaagctcgcttttgcagtggtgctataccagttatggggaggtgttcagctcctggatgcatttttgtgctgtacgtgtgtttgctgagagtattctgagatatggcttaccaccatctttcttggcatgtgttttagctccagttacaaaaagtgagaagaaagtacgatcaatccttgaggggctgtgcgacagttctaacagtactttctggaaaactgaagatgaagtggagggagggatggctggtctagcaggtgatgctgatgcacatccgtatgtttcatttacaatcaatcttgtttga

Protein Analysis

355

Amino Acids

40.19

Weight (kDa)

5.35

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1007
AasI GACNNNNNNGTC 1 cut(s) 464
Acc36I ACCTGC 1 cut(s) 1007
AccB1I GGYRCC 1 cut(s) 159
AccBSI CCGCTC 1 cut(s) 411
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 70, 411
AclWI GGATC 2 cut(s) 18, 148
AcsI RAATTY 2 cut(s) 675, 754
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 5 cut(s) 509, 741, 834, 927, 967
AfeI AGCGCT 1 cut(s) 655
AfiI CCNNNNNNNGG 2 cut(s) 169, 795
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 4 cut(s) 55, 292, 587, 689
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 2 cut(s) 6, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 9 cut(s) 175, 204, 266, 359, 417, 534, 765, 810, 899
AluI AGCT 9 cut(s) 175, 204, 266, 359, 417, 534, 765, 810, 899
Alw26I GTCTC 3 cut(s) 288, 472, 533
AlwI GGATC 2 cut(s) 18, 148
AlwNI CAGNNNCTG 1 cut(s) 813
Aor51HI AGCGCT 1 cut(s) 655
ApeKI GCWGC 1 cut(s) 201
ApoI RAATTY 2 cut(s) 675, 754
AspA2I CCTAGG 1 cut(s) 563
AspLEI GCGC 2 cut(s) 162, 656
AspS9I GGNCC 2 cut(s) 559, 567
AsuHPI GGTGA 3 cut(s) 202, 493, 1031
AvaII GGWCC 2 cut(s) 559, 567
AvrII CCTAGG 1 cut(s) 563
BanI GGYRCC 1 cut(s) 159
BauI CACGAG 1 cut(s) 657
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 213
BccI CCATC 3 cut(s) 212, 883, 997
BciT130I CCWGG 2 cut(s) 8, 814
BcoDI GTCTC 3 cut(s) 288, 472, 533
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 5 cut(s) 176, 246, 549, 564, 1013
BfmI CTRYAG 1 cut(s) 46
BfoI RGCGCY 2 cut(s) 163, 657
BfuAI ACCTGC 1 cut(s) 1007
BisI GCNGC 1 cut(s) 202
BlnI CCTAGG 1 cut(s) 563
BlpI GCTNAGC 1 cut(s) 418
BlsI GCNGC 1 cut(s) 203
BmcAI AGTACT 2 cut(s) 509, 967
Bme1390I CCNGG 2 cut(s) 8, 814
Bme18I GGWCC 2 cut(s) 559, 567
BmgT120I GGNCC 2 cut(s) 559, 567
BmiI GGNNCC 3 cut(s) 79, 161, 561
BmrFI CCNGG 2 cut(s) 8, 814
BmsI GCATC 3 cut(s) 807, 1012, 1018
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 190, 222
BpmI CTGGAG 2 cut(s) 210, 885
Bpu10I CCTNAGC 1 cut(s) 101
Bpu1102I GCTNAGC 1 cut(s) 418
BpuEI CTTGAG 2 cut(s) 329, 959
BsaAI YACGTR 1 cut(s) 836
BsaBI GATNNNNATC 1 cut(s) 1032
BsaHI GRCGYC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 563
BsaXI ACNNNNNCTCC 4 cut(s) 213, 243, 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 795
Bse1I ACTGG 3 cut(s) 227, 789, 902
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 1032
BseBI CCWGG 2 cut(s) 8, 814
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 5 cut(s) 265, 343, 822, 1008, 1033
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 2 cut(s) 169, 795
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 5 cut(s) 115, 351, 527, 837, 848
BseNI ACTGG 3 cut(s) 227, 789, 902
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 169, 795
BsmAI GTCTC 3 cut(s) 288, 472, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 2 cut(s) 25, 309
Bsp143I GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
Bsp1720I GCTNAGC 1 cut(s) 418
BspACI CCGC 2 cut(s) 70, 411
BspCNI CTCAG 5 cut(s) 114, 352, 526, 838, 849
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 79, 161, 561
BspMI ACCTGC 1 cut(s) 1007
BspPI GGATC 2 cut(s) 18, 148
BspT107I GGYRCC 1 cut(s) 159
BsrBI CCGCTC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 3 cut(s) 227, 789, 902
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
BssNI GRCGYC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 657
BssT1I CCWWGG 1 cut(s) 563
Bst2BI CACGAG 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 8, 814
Bst4CI ACNGT 5 cut(s) 214, 611, 621, 956, 965
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstBAI YACGTR 1 cut(s) 836
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 8 cut(s) 101, 267, 360, 418, 513, 573, 846, 857
BstEII GGTNACC 1 cut(s) 481
BstF5I GGATG 5 cut(s) 265, 343, 822, 1008, 1033
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 2 cut(s) 163, 657
BstHHI GCGC 2 cut(s) 162, 656
BstKTI GATC 8 cut(s) 13, 112, 156, 168, 333, 343, 433, 932
BstMAI GTCTC 3 cut(s) 288, 472, 533
BstMBI GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
BstMWI GCNNNNNNNGC 3 cut(s) 375, 1013, 1022
BstNI CCWGG 2 cut(s) 8, 814
BstNSI RCATGY 1 cut(s) 891
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 6, 812
BstSFI CTRYAG 1 cut(s) 46
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsCI GGATG 5 cut(s) 265, 343, 822, 1008, 1033
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 4 cut(s) 234, 616, 617, 782
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 813
CfoI GCGC 2 cut(s) 162, 656
Cfr13I GGNCC 2 cut(s) 559, 567
CseI GACGC 2 cut(s) 61, 710
Csp6I GTAC 5 cut(s) 508, 740, 833, 926, 966
CviAII CATG 2 cut(s) 314, 888
CviQI GTAC 5 cut(s) 508, 740, 833, 926, 966
DdeI CTNAG 8 cut(s) 101, 267, 360, 418, 513, 573, 846, 857
DinI GGCGCC 1 cut(s) 161
DpnI GATC 8 cut(s) 12, 111, 155, 167, 332, 342, 432, 931
DpnII GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 563
Eco47I GGWCC 2 cut(s) 559, 567
Eco47III AGCGCT 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 1002
Eco91I GGTNACC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 567
EcoO65I GGTNACC 1 cut(s) 481
EcoRII CCWGG 2 cut(s) 6, 812
EcoT14I CCWWGG 1 cut(s) 563
EcoT22I ATGCAT 1 cut(s) 822
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 2 cut(s) 317, 891
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 545
FatI CATG 2 cut(s) 313, 887
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 5 cut(s) 272, 350, 829, 1015, 1020
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 5 cut(s) 176, 246, 549, 564, 1013
GlaI GCGC 2 cut(s) 161, 655
GluI GCNGC 1 cut(s) 202
GsuI CTGGAG 2 cut(s) 210, 885
HaeII RGCGCY 2 cut(s) 163, 657
HapII CCGG 1 cut(s) 157
HgaI GACGC 2 cut(s) 61, 710
HhaI GCGC 2 cut(s) 162, 656
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 2 cut(s) 317, 891
Hin6I GCGC 2 cut(s) 160, 654
HinP1I GCGC 2 cut(s) 160, 654
HincII GTYRAC 2 cut(s) 383, 546
HindII GTYRAC 2 cut(s) 383, 546
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 5 cut(s) 51, 86, 192, 233, 669
HpaII CCGG 1 cut(s) 157
HphI GGTGA 3 cut(s) 202, 493, 1031
Hpy166II GTNNAC 2 cut(s) 383, 546
Hpy188I TCNGA 6 cut(s) 77, 454, 472, 516, 700, 858
Hpy188III TCNNGA 6 cut(s) 189, 196, 274, 659, 680, 973
Hpy8I GTNNAC 2 cut(s) 383, 546
Hpy99I CGWCG 3 cut(s) 77, 110, 218
HpyAV CCTTC 3 cut(s) 40, 286, 511
HpyCH4III ACNGT 5 cut(s) 214, 611, 621, 956, 965
HpyCH4IV ACGT 2 cut(s) 542, 835
HpyCH4V TGCA 6 cut(s) 326, 494, 635, 775, 820, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 1013, 1022
HpyF3I CTNAG 8 cut(s) 101, 267, 360, 418, 513, 573, 846, 857
HpySE526I ACGT 2 cut(s) 542, 835
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 2 cut(s) 317, 891
HspAI GCGC 2 cut(s) 160, 654
KasI GGCGCC 1 cut(s) 159
Kzo9I GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
LmnI GCTCC 3 cut(s) 172, 815, 904
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 3 cut(s) 807, 1012, 1018
MaeI CTAG 5 cut(s) 176, 246, 549, 564, 1013
MaeII ACGT 2 cut(s) 542, 835
MaeIII GTNAC 3 cut(s) 481, 613, 904
MalI GATC 8 cut(s) 12, 111, 155, 167, 332, 342, 432, 931
MbiI CCGCTC 1 cut(s) 411
MboI GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
MboII GAAGA 4 cut(s) 83, 599, 931, 995
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 153
MluCI AATT 6 cut(s) 439, 495, 640, 675, 734, 754
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 3 cut(s) 55, 147, 708
Mph1103I ATGCAT 1 cut(s) 822
MseI TTAA 3 cut(s) 116, 387, 758
MslI CAYNNNNRTG 2 cut(s) 825, 1038
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 8, 814
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 2 cut(s) 25, 309
MvaI CCWGG 2 cut(s) 8, 814
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 375, 1013, 1022
NarI GGCGCC 1 cut(s) 160
NdeII GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
NlaIII CATG 2 cut(s) 317, 891
NlaIV GGNNCC 3 cut(s) 79, 161, 561
NmuCI GTSAC 1 cut(s) 481
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 1 cut(s) 891
PaqCI CACCTGC 1 cut(s) 1007
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 2 cut(s) 25, 309
PfeI GAWTC 4 cut(s) 51, 86, 233, 669
PflFI GACNNNGTC 1 cut(s) 280
PfoI TCCNGGA 2 cut(s) 6, 812
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 200
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 836
PpuMI RGGWCCY 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 567
Psp6I CCWGG 2 cut(s) 6, 812
PspEI GGTNACC 1 cut(s) 481
PspGI CCWGG 2 cut(s) 6, 812
PspN4I GGNNCC 3 cut(s) 79, 161, 561
PspPI GGNCC 2 cut(s) 559, 567
PspPPI RGGWCCY 1 cut(s) 567
PstNI CAGNNNCTG 1 cut(s) 813
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 280
RsaI GTAC 5 cut(s) 509, 741, 834, 927, 967
RsaNI GTAC 5 cut(s) 508, 740, 833, 926, 966
RseI CAYNNNNRTG 2 cut(s) 825, 1038
SaqAI TTAA 3 cut(s) 116, 387, 758
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 8 cut(s) 10, 109, 153, 165, 330, 340, 430, 929
Sau96I GGNCC 2 cut(s) 559, 567
ScaI AGTACT 2 cut(s) 509, 967
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 2 cut(s) 8, 814
SfaNI GCATC 3 cut(s) 807, 1012, 1018
SfcI CTRYAG 1 cut(s) 46
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 2 cut(s) 559, 567
SmiMI CAYNNNNRTG 2 cut(s) 825, 1038
SmlI CTYRAG 2 cut(s) 344, 938
SmoI CTYRAG 2 cut(s) 344, 938
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 6 cut(s) 439, 495, 640, 675, 734, 754
SsiI CCGC 2 cut(s) 70, 411
SspDI GGCGCC 1 cut(s) 159
SspI AATATT 1 cut(s) 58
SspMI CTAG 5 cut(s) 176, 246, 549, 564, 1013
StyD4I CCNGG 2 cut(s) 6, 812
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 5 cut(s) 214, 611, 621, 956, 965
TaiI ACGT 2 cut(s) 545, 838
TaqI TCGA 9 cut(s) 33, 84, 168, 195, 216, 303, 333, 628, 715
TasI AATT 6 cut(s) 439, 495, 640, 675, 734, 754
TatI WGTACW 2 cut(s) 507, 965
TfiI GAWTC 4 cut(s) 51, 86, 233, 669
Tru1I TTAA 3 cut(s) 116, 387, 758
Tru9I TTAA 3 cut(s) 116, 387, 758
TscAI CASTG 4 cut(s) 234, 616, 624, 782
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 225, 276, 302, 1002, 1035
TspGWI ACGGA 2 cut(s) 416, 1026
TspRI CASTG 4 cut(s) 234, 616, 624, 782
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 559, 567
XapI RAATTY 2 cut(s) 675, 754
XceI RCATGY 1 cut(s) 891
XmaJI CCTAGG 1 cut(s) 563
XspI CTAG 5 cut(s) 176, 246, 549, 564, 1013
ZrmI AGTACT 2 cut(s) 509, 967
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.