pycom111g00330

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
246333 .. 249337
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00330.2

Sequence Viewer

Length: 1131 bp
ATGGCGAGCAGGTATTGGGTGGTGTCTCTGCCGGTTCAAAACTCAGCGTCGTCTCTATGGAACCGTCTGCAGGAACAAATCTCCAAGCATTCCTTCGACACTCCCCTCTACAGATTCAATATTCCTAATCTCCGTGTTGGAACCCTGGATTCTCTTCTCTCCCTCAGCGACGATCTCTTGAAGTCCAACAACTTTGTAGAGGGTGTTTCTCATAAGATCAGGCGCCAGATCGAGGAGCTTGAGAGGGTTTCTGGCGTGGAGAGTAGCGCTCTGACTGTCGATGGAGTGCCTGTCGATTCATACCTCACCAGGTTTGTTTGGGATGAAGCTAAGTATCCAACAATGTCGCCTTTGAAGGAGGTGATAGACAGCATACATGGTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTCGTGTAGCCGAGTATAATAATGTCCGCAGTCAACTGAATGCTATCAATAGAAAGCAGAGTGGAAGCTTAGCAGTTCGTGATCTTTCAAGTTTAGTGAAATCAGAGGACATCATTGTTTCAGAACATCTAGTGACCCTCCTTGCAATTGTTCCCAAGTACTCTCAGAAGGATTGGCTATCAAGCTATGAGACCTTGACTAACTATGTGGTCCCTAGGTCCTCCAAGAAGTTATTTGAAGATAATGAATATGCTCTTTACACTGTAACACTGTTTAATCGGGTTGCAGATAACTTTAGAACAAGTGCTCGTGAAAAGGGGTTCCAGATTCGTGATTTTGAATACAGTTCTGAAGCACAAGAAAGTCGAAAGCAGGAGTTAGAAAAATTGGTGCAAGACCAAGAAAATTTAAGAGCCTCCCTTTTGCAGTGGTGCTATACCAGTTACGGGGAGGTTTTTAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTTTGAGATATGGTTTACCACCAAATTTCTTGGCATGCGTGCTAGCCCCTACTACAAAAGCCGAGAAGAAAGTCCGTTCAATCCTTGAAGGATTGTGCGACAGTGGCAACAGTACCTTCTGGAAAACTGATGATGAAGCCGGGGGAGGAGTGCCTGGTCTAGCAGGTGATGCGGATGCACATCCATATGTTTCATTCACGATCGATCTTGTTTGA

Protein Analysis

377

Amino Acids

42.55

Weight (kDa)

5.44

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1070
Acc36I ACCTGC 1 cut(s) 1070
AccB1I GGYRCC 1 cut(s) 222
AciI CCGC 2 cut(s) 439, 1088
AcsI RAATTY 2 cut(s) 817, 940
AcuI CTGAAG 1 cut(s) 783
AcyI GRCGYC 1 cut(s) 223
AfaI GTAC 3 cut(s) 572, 897, 1030
AfeI AGCGCT 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 70, 232, 858
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 9 cut(s) 38, 118, 181, 355, 501, 650, 752, 996, 1004
AjnI CCWGG 4 cut(s) 144, 308, 875, 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 5 cut(s) 238, 329, 480, 597, 873
AluI AGCT 5 cut(s) 238, 329, 480, 597, 873
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 3 cut(s) 30, 57, 596
Aor51HI AGCGCT 1 cut(s) 268
ApoI RAATTY 2 cut(s) 817, 940
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 2 cut(s) 225, 269
AspS9I GGNCC 2 cut(s) 622, 630
AsuC2I CCSGG 1 cut(s) 1057
AsuHPI GGTGA 3 cut(s) 298, 373, 1094
AsuNHI GCTAGC 1 cut(s) 958
AvaII GGWCC 2 cut(s) 622, 630
AvrII CCTAGG 1 cut(s) 626
BanI GGYRCC 1 cut(s) 222
BauI CACGAG 1 cut(s) 720
Bbv12I GWGCWC 1 cut(s) 721
BbvCI CCTCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 4 cut(s) 146, 310, 877, 1071
BciVI GTATCC 1 cut(s) 345
BcnI CCSGG 1 cut(s) 1057
BcoDI GTCTC 3 cut(s) 30, 57, 596
BfaI CTAG 4 cut(s) 542, 627, 959, 1076
BfmI CTRYAG 2 cut(s) 68, 109
BfoI RGCGCY 2 cut(s) 226, 270
BfuAI ACCTGC 1 cut(s) 1070
BfuI GTATCC 1 cut(s) 345
BlnI CCTAGG 1 cut(s) 626
BlpI GCTNAGC 1 cut(s) 481
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 5 cut(s) 146, 310, 877, 1057, 1071
Bme18I GGWCC 2 cut(s) 622, 630
BmgT120I GGNCC 2 cut(s) 622, 630
BmiI GGNNCC 5 cut(s) 62, 142, 224, 624, 734
BmrFI CCNGG 5 cut(s) 146, 310, 877, 1057, 1071
BmsI GCATC 3 cut(s) 870, 1075, 1081
BmtI GCTAGC 1 cut(s) 962
BplI GAGNNNNNCTC 2 cut(s) 253, 285
Bpu10I CCTNAGC 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 260, 392
BpuMI CCSGG 1 cut(s) 1057
Bsa29I ATCGAT 1 cut(s) 1119
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 1095
BsaHI GRCGYC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 144, 626, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 232, 858
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 1095
BseBI CCWGG 4 cut(s) 146, 310, 877, 1071
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 3 cut(s) 144, 626, 1056
BseGI GGATG 5 cut(s) 328, 406, 885, 1096, 1096
BseJI GATNNNNATC 1 cut(s) 1095
BseLI CCNNNNNNNGG 3 cut(s) 70, 232, 858
BseMII CTCAG 3 cut(s) 57, 178, 590
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 2 cut(s) 248, 1077
Bsh1285I CGRYCG 1 cut(s) 1119
BshNI GGYRCC 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 1119
BsiEI CGRYCG 1 cut(s) 1119
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 2 cut(s) 32, 1056
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 3 cut(s) 70, 232, 858
BsmAI GTCTC 3 cut(s) 30, 57, 596
BsmBI CGTCTC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 608
BsmI GAATGC 2 cut(s) 88, 457
Bso31I GGTCTC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 721
Bsp143I GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
Bsp1720I GCTNAGC 1 cut(s) 481
BspACI CCGC 2 cut(s) 439, 1088
BspCNI CTCAG 3 cut(s) 56, 177, 589
BspDI ATCGAT 1 cut(s) 1119
BspLI GGNNCC 5 cut(s) 62, 142, 224, 624, 734
BspMAI CTGCAG 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 1070
BspOI GCTAGC 1 cut(s) 962
BspT107I GGYRCC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 1 cut(s) 852
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 144, 626, 1056
BssMI GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
BssNI GRCGYC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 4 cut(s) 146, 310, 877, 1071
Bst4CI ACNGT 7 cut(s) 65, 277, 676, 684, 758, 1019, 1028
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 1085
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 4 cut(s) 7, 952, 956, 960
BstDEI CTNAG 5 cut(s) 43, 164, 330, 481, 576
BstF5I GGATG 5 cut(s) 328, 406, 885, 1096, 1096
BstH2I RGCGCY 2 cut(s) 226, 270
BstHHI GCGC 2 cut(s) 225, 269
BstKTI GATC 7 cut(s) 175, 219, 231, 406, 496, 1119, 1123
BstMAI GTCTC 3 cut(s) 30, 57, 596
BstMBI GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
BstMCI CGRYCG 1 cut(s) 1119
BstMWI GCNNNNNNNGC 2 cut(s) 1020, 1085
BstNI CCWGG 4 cut(s) 146, 310, 877, 1071
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 5 cut(s) 144, 308, 875, 1055, 1069
BstSFI CTRYAG 2 cut(s) 68, 109
Bsu15I ATCGAT 1 cut(s) 1119
BsuI GTATCC 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 1119
BtsCI GGATG 5 cut(s) 328, 406, 885, 1096, 1096
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 4 cut(s) 672, 680, 845, 1024
BveI ACCTGC 1 cut(s) 1070
Cac8I GCNNGC 4 cut(s) 7, 952, 956, 960
CfoI GCGC 2 cut(s) 225, 269
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 622, 630
ClaI ATCGAT 1 cut(s) 1119
CseI GACGC 1 cut(s) 36
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 3 cut(s) 571, 896, 1029
CviAII CATG 2 cut(s) 377, 951
CviQI GTAC 3 cut(s) 571, 896, 1029
DdeI CTNAG 5 cut(s) 43, 164, 330, 481, 576
DinI GGCGCC 1 cut(s) 224
DpnI GATC 7 cut(s) 174, 218, 230, 405, 495, 1118, 1122
DpnII GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 2 cut(s) 622, 630
Eco47III AGCGCT 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 630
EcoRII CCWGG 4 cut(s) 144, 308, 875, 1069
EcoT14I CCWWGG 1 cut(s) 626
EcoT22I ATGCAT 1 cut(s) 885
EgeI GGCGCC 1 cut(s) 224
EheI GGCGCC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 626
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 2 cut(s) 380, 954
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FaqI GGGAC 1 cut(s) 608
FatI CATG 2 cut(s) 376, 950
FauNDI CATATG 1 cut(s) 1102
FokI GGATG 5 cut(s) 335, 413, 892, 1083, 1103
FspBI CTAG 4 cut(s) 542, 627, 959, 1076
GlaI GCGC 2 cut(s) 224, 268
HaeII RGCGCY 2 cut(s) 226, 270
HapII CCGG 2 cut(s) 32, 1056
HgaI GACGC 1 cut(s) 36
HhaI GCGC 2 cut(s) 225, 269
Hin1I GRCGYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 380, 954
Hin6I GCGC 2 cut(s) 223, 267
HinP1I GCGC 2 cut(s) 223, 267
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 4 cut(s) 114, 149, 296, 739
HpaII CCGG 2 cut(s) 32, 1056
HphI GGTGA 3 cut(s) 298, 373, 1094
Hpy166II GTNNAC 2 cut(s) 446, 932
Hpy188I TCNGA 5 cut(s) 273, 517, 535, 579, 763
Hpy188III TCNNGA 7 cut(s) 178, 491, 722, 736, 743, 1036, 1114
Hpy8I GTNNAC 2 cut(s) 446, 932
Hpy99I CGWCG 2 cut(s) 52, 173
HpyAV CCTTC 5 cut(s) 103, 349, 574, 998, 1042
HpyCH4III ACNGT 7 cut(s) 65, 277, 676, 684, 758, 1019, 1028
HpyCH4IV ACGT 1 cut(s) 898
HpyCH4V TGCA 9 cut(s) 70, 389, 557, 698, 805, 838, 883, 908, 1094
HpyF10VI GCNNNNNNNGC 2 cut(s) 1020, 1085
HpyF3I CTNAG 5 cut(s) 43, 164, 330, 481, 576
HpySE526I ACGT 1 cut(s) 898
Hsp92I GRCGYC 1 cut(s) 223
Hsp92II CATG 2 cut(s) 380, 954
HspAI GCGC 2 cut(s) 223, 267
KasI GGCGCC 1 cut(s) 222
Kzo9I GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
LmnI GCTCC 2 cut(s) 235, 878
LweI GCATC 3 cut(s) 870, 1075, 1081
MabI ACCWGGT 1 cut(s) 308
MaeI CTAG 4 cut(s) 542, 627, 959, 1076
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 3 cut(s) 544, 676, 854
MalI GATC 7 cut(s) 174, 218, 230, 405, 495, 1118, 1122
MboI GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
MboII GAAGA 3 cut(s) 146, 662, 994
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 4 cut(s) 558, 797, 817, 940
Mly113I GGCGCC 1 cut(s) 223
MmeI TCCRAC 3 cut(s) 118, 210, 362
Mph1103I ATGCAT 1 cut(s) 885
MseI TTAA 2 cut(s) 687, 821
MslI CAYNNNNRTG 2 cut(s) 888, 1101
MspI CCGG 2 cut(s) 32, 1056
MspR9I CCNGG 5 cut(s) 146, 310, 877, 1057, 1071
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 2 cut(s) 88, 457
MvaI CCWGG 4 cut(s) 146, 310, 877, 1071
MwoI GCNNNNNNNGC 2 cut(s) 1020, 1085
NarI GGCGCC 1 cut(s) 223
NciI CCSGG 1 cut(s) 1057
NdeI CATATG 1 cut(s) 1102
NdeII GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
NheI GCTAGC 1 cut(s) 958
NlaIII CATG 2 cut(s) 380, 954
NlaIV GGNNCC 5 cut(s) 62, 142, 224, 624, 734
NmeAIII GCCGAG 2 cut(s) 448, 1003
NmuCI GTSAC 1 cut(s) 544
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 1 cut(s) 954
PaeI GCATGC 1 cut(s) 954
PaqCI CACCTGC 1 cut(s) 1070
PctI GAATGC 2 cut(s) 88, 457
PfeI GAWTC 4 cut(s) 114, 149, 296, 739
PfoI TCCNGGA 1 cut(s) 875
Ple19I CGATCG 1 cut(s) 1119
PluTI GGCGCC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 899
PpuMI RGGWCCY 1 cut(s) 630
Psp5II RGGWCCY 1 cut(s) 630
Psp6I CCWGG 4 cut(s) 144, 308, 875, 1069
PspGI CCWGG 4 cut(s) 144, 308, 875, 1069
PspN4I GGNNCC 5 cut(s) 62, 142, 224, 624, 734
PspPI GGNCC 2 cut(s) 622, 630
PspPPI RGGWCCY 1 cut(s) 630
PstI CTGCAG 1 cut(s) 72
PvuI CGATCG 1 cut(s) 1119
RsaI GTAC 3 cut(s) 572, 897, 1030
RsaNI GTAC 3 cut(s) 571, 896, 1029
RseI CAYNNNNRTG 2 cut(s) 888, 1101
SaqAI TTAA 2 cut(s) 687, 821
Sau3AI GATC 7 cut(s) 172, 216, 228, 403, 493, 1116, 1120
Sau96I GGNCC 2 cut(s) 622, 630
ScaI AGTACT 1 cut(s) 572
ScrFI CCNGG 5 cut(s) 146, 310, 877, 1057, 1071
SduI GDGCHC 1 cut(s) 721
SexAI ACCWGGT 1 cut(s) 308
SfaNI GCATC 3 cut(s) 870, 1075, 1081
SfcI CTRYAG 2 cut(s) 68, 109
SfoI GGCGCC 1 cut(s) 224
SinI GGWCC 2 cut(s) 622, 630
SmiMI CAYNNNNRTG 2 cut(s) 888, 1101
SmlI CTYRAG 2 cut(s) 239, 407
SmoI CTYRAG 2 cut(s) 239, 407
SphI GCATGC 1 cut(s) 954
Sse9I AATT 4 cut(s) 558, 797, 817, 940
SsiI CCGC 2 cut(s) 439, 1088
SspDI GGCGCC 1 cut(s) 222
SspI AATATT 1 cut(s) 121
SspMI CTAG 4 cut(s) 542, 627, 959, 1076
StyD4I CCNGG 5 cut(s) 144, 308, 875, 1055, 1069
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 7 cut(s) 65, 277, 676, 684, 758, 1019, 1028
TaiI ACGT 1 cut(s) 901
TaqI TCGA 6 cut(s) 96, 231, 279, 294, 778, 1119
TasI AATT 4 cut(s) 558, 797, 817, 940
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 4 cut(s) 114, 149, 296, 739
Tru1I TTAA 2 cut(s) 687, 821
Tru9I TTAA 2 cut(s) 687, 821
TscAI CASTG 4 cut(s) 679, 687, 845, 1024
TseFI GTSAC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 5 cut(s) 288, 339, 672, 1065, 1098
TspGWI ACGGA 2 cut(s) 122, 980
TspRI CASTG 4 cut(s) 679, 687, 845, 1024
VpaK11BI GGWCC 2 cut(s) 622, 630
XapI RAATTY 2 cut(s) 817, 940
XceI RCATGY 1 cut(s) 954
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 4 cut(s) 542, 627, 959, 1076
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.