AT1G13635

Methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007725
Physical Location & Seq
Forward (+)
4674152 .. 4676484
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13635.2

Sequence Viewer

Length: 936 bp
ATGTATAAGGCAAGTCCTAAAAGAAAAGAGATTGTAGAGAAAAGCAAGAGTGTAAGAGAGAAGGAGATTAAACAAAACTCAAATTTCTTTGCCAAACACTTAAAGAGGATTTACCCAATCACGCTTCAACGAAGCACTTCTTCTTCATTTTCACTCTCTTCTATATCTCTATCACTCTCTCAGAACTCGACCGATTCTGTTTCCACGGATTCAAATTCGACGTTGGAACAAAAGATCTCTCTGGCACTCGGTTTAATCTCATCTCCCCACAGAAGAGAAATATTTGTTCCAAAAAGTATCCCACAACAACTATGTCAGGATTTCAATAGTAGTGATGAACCAAAGAGGTGCAACTGGATCACCAAGAAAAGTGACGAAGTCTACGTAATGTTTCATGACCAGCAATGGGGAGTCCCTGTCTATGATGATAACCTGCTTTTTGAGTTCCTTGCCATGTCGGGGATGTTAATGGACTATAACTGGACCGAGATTCTAAAACGCAAAGAACACTTTAGAGAGGCATTTTGTGAGTTTGACCCAAATCGGGTGGCCAAAATGGGAGAGAAAGAGATCGCAGAGATTGCATCAAATAAAGCAATAATGTTACAAGAGAGTAGAGTCAGGTGTATAGTCGACAATGCCAAATGCATAACCAAGGTGGTCAATGAATTTGGATCATTCAGCAGCTTCGTTTGGGGGTTTATGGATTACAAACCTATCATTAACAAATTCAAGTATTCAAGAAATGTACCATTGAGATCTCCTAAGGCTGAGATAATTAGCAAAGATATGATCAAACGAGGGTTTCGATTTGTCGGTCCAGTGATCGTACATTCGTTCATGCAGGCTGCAGGGTTAACAATTGATCACCTCGTCGATTGTTTTAGACATGGTGATTGTGTGAGCCTCGCTGAGAGGCCATGGAGGCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
Adenine_glyco

Protein Analysis

311

Amino Acids

35.95

Weight (kDa)

9.2

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Adenine_glyco PF03352 122 - 297 1.1e-65 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccI GTMKAC 2 cut(s) 381, 633
AclWI GGATC 2 cut(s) 365, 682
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 4 cut(s) 82, 214, 668, 728
AfaI GTAC 2 cut(s) 750, 831
AfiI CCNNNNNNNGG 3 cut(s) 406, 459, 544
AgsI TTSAA 5 cut(s) 128, 213, 325, 733, 741
AluBI AGCT 1 cut(s) 687
AluI AGCT 1 cut(s) 687
AlwI GGATC 2 cut(s) 365, 682
AoxI GGCC 2 cut(s) 549, 917
ApeKI GCWGC 2 cut(s) 684, 848
ApoI RAATTY 4 cut(s) 82, 214, 668, 728
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 483, 818
AsuHPI GGTGA 3 cut(s) 352, 860, 905
AvaII GGWCC 2 cut(s) 483, 818
AxyI CCTNAGG 1 cut(s) 765
BalI TGGCCA 1 cut(s) 551
BbvI GCAGC 2 cut(s) 696, 835
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 2 cut(s) 792, 865
BfmI CTRYAG 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 925
BglII AGATCT 2 cut(s) 234, 758
BisI GCNGC 2 cut(s) 685, 849
BlsI GCNGC 2 cut(s) 686, 850
Bme18I GGWCC 2 cut(s) 483, 818
BmgT120I GGNCC 2 cut(s) 483, 818
BmsI GCATC 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 204, 654, 920
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 459, 544
Bse1I ACTGG 3 cut(s) 359, 485, 821
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 204, 654, 920
BseGI GGATG 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 406, 459, 544
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 3 cut(s) 194, 762, 903
BseNI ACTGG 3 cut(s) 359, 485, 821
BseXI GCAGC 2 cut(s) 696, 835
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 2 cut(s) 551, 919
BsiEI CGRYCG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 406, 459, 544
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 551, 919
Bsp143I GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
Bsp19I CCATGG 1 cut(s) 920
BspANI GGCC 2 cut(s) 551, 919
BspCNI CTCAG 3 cut(s) 193, 763, 904
BspHI TCATGA 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 853
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 365, 682
BsrDI GCAATG 1 cut(s) 410
BsrI ACTGG 3 cut(s) 359, 485, 821
BssECI CCNNGG 3 cut(s) 204, 654, 920
BssMI GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
BssT1I CCWWGG 2 cut(s) 654, 920
Bst6I CTCTTC 2 cut(s) 163, 268
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 180, 765, 771, 912
BstDSI CCRYGG 2 cut(s) 204, 920
BstF5I GGATG 1 cut(s) 468
BstKTI GATC 8 cut(s) 237, 360, 573, 677, 761, 795, 828, 868
BstMBI GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 581, 925
BstSFI CTRYAG 1 cut(s) 849
BstSNI TACGTA 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 696, 835
BstX2I RGATCY 2 cut(s) 234, 758
BstYI RGATCY 2 cut(s) 234, 758
Bsu36I CCTNAGG 1 cut(s) 765
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 2 cut(s) 551, 919
BtgI CCRYGG 2 cut(s) 204, 920
BtsCI GGATG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 828
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 846
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 483, 818
Csp6I GTAC 2 cut(s) 749, 830
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 5 cut(s) 395, 454, 841, 890, 921
CviJI RGCY 6 cut(s) 551, 687, 770, 848, 906, 919
CviKI_1 RGCY 6 cut(s) 551, 687, 770, 848, 906, 919
CviQI GTAC 2 cut(s) 749, 830
DdeI CTNAG 4 cut(s) 180, 765, 771, 912
DpnI GATC 8 cut(s) 236, 359, 572, 676, 760, 794, 827, 867
DpnII GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 163, 268
EarI CTCTTC 2 cut(s) 163, 268
Eco105I TACGTA 1 cut(s) 385
Eco130I CCWWGG 2 cut(s) 654, 920
Eco47I GGWCC 2 cut(s) 483, 818
Eco81I CCTNAGG 1 cut(s) 765
EcoT14I CCWWGG 2 cut(s) 654, 920
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 2 cut(s) 654, 920
FaeI CATG 5 cut(s) 398, 457, 844, 893, 924
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FaqI GGGAC 1 cut(s) 398
FatI CATG 5 cut(s) 394, 453, 840, 889, 920
FbaI TGATCA 2 cut(s) 792, 865
FblI GTMKAC 2 cut(s) 381, 633
Fnu4HI GCNGC 2 cut(s) 685, 849
FokI GGATG 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 685, 849
GluI GCNGC 2 cut(s) 685, 849
HaeIII GGCC 2 cut(s) 551, 919
Hin1II CATG 5 cut(s) 398, 457, 844, 893, 924
HincII GTYRAC 2 cut(s) 634, 858
HindII GTYRAC 2 cut(s) 634, 858
HinfI GANTC 5 cut(s) 194, 209, 411, 490, 618
HpaI GTTAAC 1 cut(s) 858
HphI GGTGA 3 cut(s) 352, 860, 905
Hpy166II GTNNAC 3 cut(s) 382, 634, 858
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 317, 395, 741
Hpy8I GTNNAC 3 cut(s) 382, 634, 858
Hpy99I CGWCG 2 cut(s) 223, 878
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 2 cut(s) 221, 384
HpyCH4V TGCA 5 cut(s) 351, 584, 648, 844, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 925
HpyF3I CTNAG 4 cut(s) 180, 765, 771, 912
HpySE526I ACGT 2 cut(s) 221, 384
Hsp92II CATG 5 cut(s) 398, 457, 844, 893, 924
Ksp22I TGATCA 2 cut(s) 792, 865
KspAI GTTAAC 1 cut(s) 858
Kzo9I GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
Lsp1109I GCAGC 2 cut(s) 696, 835
LweI GCATC 1 cut(s) 593
MaeII ACGT 2 cut(s) 221, 384
MaeIII GTNAC 2 cut(s) 371, 603
MalI GATC 8 cut(s) 236, 359, 572, 676, 760, 794, 827, 867
MboI GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
MboII GAAGA 4 cut(s) 132, 135, 150, 285
MfeI CAATTG 1 cut(s) 861
MflI RGATCY 2 cut(s) 234, 758
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 6 cut(s) 82, 214, 668, 728, 777, 861
MluNI TGGCCA 1 cut(s) 551
MlyI GAGTC 2 cut(s) 420, 627
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 8 cut(s) 99, 339, 511, 794, 881, 909, 917, 918
Mox20I TGGCCA 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 136
MscI TGGCCA 1 cut(s) 551
MseI TTAA 6 cut(s) 69, 101, 254, 467, 723, 857
Msp20I TGGCCA 1 cut(s) 551
MunI CAATTG 1 cut(s) 861
MwoI GCNNNNNNNGC 2 cut(s) 581, 925
NcoI CCATGG 1 cut(s) 920
NdeII GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
NlaIII CATG 5 cut(s) 398, 457, 844, 893, 924
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 650
PagI TCATGA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 805
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 194, 209, 490
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 686, 850
PleI GAGTC 2 cut(s) 419, 626
PpsI GAGTC 2 cut(s) 419, 626
Ppu21I YACGTR 1 cut(s) 385
PspPI GGNCC 2 cut(s) 483, 818
PstI CTGCAG 1 cut(s) 853
PsuI RGATCY 2 cut(s) 234, 758
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 2 cut(s) 750, 831
RsaNI GTAC 2 cut(s) 749, 830
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 6 cut(s) 69, 101, 254, 467, 723, 857
SatI GCNGC 2 cut(s) 685, 849
Sau3AI GATC 8 cut(s) 234, 357, 570, 674, 758, 792, 825, 865
Sau96I GGNCC 2 cut(s) 483, 818
SchI GAGTC 2 cut(s) 420, 627
SetI ASST 9 cut(s) 224, 350, 387, 435, 626, 660, 689, 718, 873
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 1 cut(s) 849
SinI GGWCC 2 cut(s) 483, 818
SnaBI TACGTA 1 cut(s) 385
Sse9I AATT 6 cut(s) 82, 214, 668, 728, 777, 861
SspI AATATT 1 cut(s) 282
StyI CCWWGG 2 cut(s) 654, 920
TaiI ACGT 2 cut(s) 224, 387
TaqI TCGA 5 cut(s) 188, 218, 633, 808, 876
TaqII GACCGA 3 cut(s) 206, 500, 806
TasI AATT 6 cut(s) 82, 214, 668, 728, 777, 861
TfiI GAWTC 3 cut(s) 194, 209, 490
Tru1I TTAA 6 cut(s) 69, 101, 254, 467, 723, 857
Tru9I TTAA 6 cut(s) 69, 101, 254, 467, 723, 857
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 684, 848
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 5 cut(s) 135, 351, 383, 681, 829
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 828
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 483, 818
XapI RAATTY 4 cut(s) 82, 214, 668, 728
XmiI GTMKAC 2 cut(s) 381, 633
XmnI GAANNNNTTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.