AT1G13730

nuclear transport factor 2 (NTF2) family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4709757 .. 4712672
2916 bp
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UTR
Exon/CDS
Intron
AT1G13730.1

Sequence Viewer

Length: 1287 bp
ATGGCACTTGAATCAAATGCTCCAGTGGTGGACCCAAACACTATTGGCAATTCTTTTGTTGAGAAATACTACAACCTCTTGTATAAGTCACCATCGCAAGTGCATCAGTTTTATCTCGACGATAGTGTTTTAGGCCGTCCTGGTTCTGATGGAGAGATGGTTTCTGTCAAATCCTTGAAAGCTATCAATGAGCAGATTATGTCCTTCGATTACGAAATCTCAAAGATTCAGATTTTGACTGCTGATTCCCAAGCATCTTACATGAATGGAGTTGTGACTCTAGTCACAGGTTTACTAACCGTGAAAGAGGGGCAAAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGCTGAATGGAAGCTATTTCGTTCTCAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCAGAAGCTAACAAGAAAGAAGTCGAGGAGGTTATTCCTCAAGTGGTCCAACCAACAGAGCAGGTAGATGAAGTTGCAGAGCCGGTTACTATCCCTACCCAACAACCCGAGGCGAAACAGACAACCGAAAATACAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGACATCCCAAAACACAGGAGGATAATGTTGTGAACGATAAAAGCAATGGTGTTGATGCTCCCAAGAAATCATTTGCACATATTGTCCAAGATTTGGCTCAAAACGGTGCTACATTCAATGCCAAAGCTTCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCGTGAATCCAAAGCTCCTGCTCCTGTTTCTGAACACTCTTCTGCTGCAACAATCGACCAACAAGCTGAGGGTTATACGATATTTGTTGCCAACTTGCTCATGGACGCTACACCAGAGCAACTAAATGAAACATTCAAAGGTTTTGGAGCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAGGCTCAAGGGAAACTGTTTTGGCTTTGTGACATTCGCATCTGCTGAAGCTGTGAAATTGGTCCTCCAGGCTCACAAAGAATCAGCCATCAGAATCGGAAACCGAAGAGTTTCAATAGAAGAGAAACGAGGCAACAACGATAATGGAAGACCCGCAATGCGAAACGGAGGTTATAGGAACGACAACGGTTACAGAAACGATGGGTATAGGCCTCGAGGCAACGGTTCCAATGGAGGTCGAGGCTATGGAAGAAATGGATCTGAGAGACGGGGTGAATCACGCAATGGTGAGGCTCACAATGGTGATGGCAAAGTTCATCAGAACGGTACGGTAGAAGCTAGCCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

46.8

Weight (kDa)

7.08

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 15 - 131 2.2e-33 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 279 - 337 1.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1152
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 673
AciI CCGC 2 cut(s) 350, 1092
AclWI GGATC 1 cut(s) 1204
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 1 cut(s) 1267
AfiI CCNNNNNNNGG 2 cut(s) 356, 673
AgsI TTSAA 6 cut(s) 11, 178, 413, 697, 892, 1053
AjnI CCWGG 2 cut(s) 139, 1005
AleI CACNNNNGTG 1 cut(s) 1239
Alw26I GTCTC 1 cut(s) 1198
AlwI GGATC 1 cut(s) 1204
Ama87I CYCGRG 2 cut(s) 521, 1152
AoxI GGCC 2 cut(s) 133, 1148
ApeKI GCWGC 2 cut(s) 752, 800
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
Asp700I GAANNNNTTC 1 cut(s) 1048
AspS9I GGNCC 3 cut(s) 31, 460, 1000
AsuHPI GGTGA 4 cut(s) 81, 1223, 1238, 1253
AsuNHI GCTAGC 1 cut(s) 1277
AvaI CYCGRG 2 cut(s) 521, 1152
AvaII GGWCC 3 cut(s) 31, 460, 1000
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 1093
BbvCI CCTCAGC 1 cut(s) 822
BbvI GCAGC 2 cut(s) 739, 787
BccI CCATC 7 cut(s) 100, 143, 151, 911, 1034, 1133, 1238
BceAI ACGGC 2 cut(s) 120, 1266
BciT130I CCWGG 2 cut(s) 141, 1007
BciVI GTATCC 1 cut(s) 932
BcoDI GTCTC 1 cut(s) 1198
BfaI CTAG 2 cut(s) 281, 1278
BfmI CTRYAG 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 932
BisI GCNGC 3 cut(s) 350, 753, 801
BlsI GCNGC 3 cut(s) 351, 754, 802
Bme1390I CCNGG 2 cut(s) 141, 1007
Bme18I GGWCC 3 cut(s) 31, 460, 1000
BmeT110I CYCGRG 2 cut(s) 521, 1152
BmgT120I GGNCC 3 cut(s) 31, 460, 1000
BmiI GGNNCC 2 cut(s) 33, 1165
BmrFI CCNGG 2 cut(s) 141, 1007
BmsI GCATC 4 cut(s) 112, 263, 625, 986
BmtI GCTAGC 1 cut(s) 1281
BoxI GACNNNNGTC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 1093
BplI GAGNNNNNCTC 4 cut(s) 313, 345, 739, 771
BpmI CTGGAG 2 cut(s) 6, 989
Bpu10I CCTNAGC 1 cut(s) 822
BpuEI CTTGAG 2 cut(s) 438, 929
BsaJI CCNNGG 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 673
Bse118I RCCGGY 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 3 cut(s) 631, 1101, 1228
BseBI CCWGG 2 cut(s) 141, 1007
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 2 cut(s) 356, 673
BseMI GCAATG 3 cut(s) 631, 1101, 1228
BseMII CTCAG 2 cut(s) 813, 1191
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 739, 787
BshFI GGCC 2 cut(s) 135, 1150
BsiHKCI CYCGRG 2 cut(s) 521, 1152
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 2 cut(s) 356, 673
BsmAI GTCTC 1 cut(s) 1198
BsmBI CGTCTC 1 cut(s) 1198
BsnI GGCC 2 cut(s) 135, 1150
BsoBI CYCGRG 2 cut(s) 521, 1152
Bsp143I GATC 1 cut(s) 1196
BspACI CCGC 2 cut(s) 350, 1092
BspANI GGCC 2 cut(s) 135, 1150
BspCNI CTCAG 2 cut(s) 814, 1192
BspLI GGNNCC 2 cut(s) 33, 1165
BspMI ACCTGC 1 cut(s) 466
BspOI GCTAGC 1 cut(s) 1281
BspPI GGATC 1 cut(s) 1204
BsrDI GCAATG 3 cut(s) 631, 1101, 1228
BsrFI RCCGGY 1 cut(s) 496
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 1 cut(s) 1196
BssSI CACGAG 1 cut(s) 756
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 141, 1007
Bst4CI ACNGT 8 cut(s) 301, 550, 686, 956, 1127, 1163, 1265, 1270
Bst6I CTCTTC 3 cut(s) 799, 1039, 1053
BstC8I GCNNGC 1 cut(s) 1279
BstDEI CTNAG 4 cut(s) 723, 729, 822, 1200
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 1 cut(s) 1199
BstMAI GTCTC 1 cut(s) 1198
BstMBI GATC 1 cut(s) 1196
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstNI CCWGG 2 cut(s) 141, 1007
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 139, 1005
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 2 cut(s) 739, 787
BstV2I GAAGAC 1 cut(s) 1093
BstX2I RGATCY 1 cut(s) 1196
BstYI RGATCY 1 cut(s) 1196
BsuI GTATCC 1 cut(s) 932
BsuRI GGCC 2 cut(s) 135, 1150
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 2 cut(s) 30, 555
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 1279
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 3 cut(s) 31, 460, 1000
CseI GACGC 1 cut(s) 869
Csp6I GTAC 1 cut(s) 1266
CviAII CATG 2 cut(s) 262, 856
CviQI GTAC 1 cut(s) 1266
DdeI CTNAG 4 cut(s) 723, 729, 822, 1200
DpnI GATC 1 cut(s) 1198
DpnII GATC 1 cut(s) 1196
Eam1104I CTCTTC 3 cut(s) 799, 1039, 1053
EarI CTCTTC 3 cut(s) 799, 1039, 1053
Eco147I AGGCCT 1 cut(s) 1150
Eco47I GGWCC 3 cut(s) 31, 460, 1000
Eco57I CTGAAG 1 cut(s) 1005
Eco88I CYCGRG 2 cut(s) 521, 1152
EcoRII CCWGG 2 cut(s) 139, 1005
Esp3I CGTCTC 1 cut(s) 1198
FaeI CATG 2 cut(s) 265, 859
FatI CATG 2 cut(s) 261, 855
FauI CCCGC 1 cut(s) 1099
Fnu4HI GCNGC 3 cut(s) 350, 753, 801
FokI GGATG 1 cut(s) 570
Fsp4HI GCNGC 3 cut(s) 350, 753, 801
FspBI CTAG 2 cut(s) 281, 1278
GluI GCNGC 3 cut(s) 350, 753, 801
GsuI CTGGAG 2 cut(s) 6, 989
HaeIII GGCC 2 cut(s) 135, 1150
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 869
Hin1II CATG 2 cut(s) 265, 859
HindIII AAGCTT 1 cut(s) 705
HinfI GANTC 8 cut(s) 11, 226, 245, 277, 761, 1019, 1032, 1214
HpaII CCGG 1 cut(s) 497
HphI GGTGA 4 cut(s) 81, 1223, 1238, 1253
Hpy166II GTNNAC 3 cut(s) 31, 293, 613
Hpy188I TCNGA 7 cut(s) 148, 231, 787, 1031, 1037, 1201, 1260
Hpy188III TCNNGA 2 cut(s) 116, 758
Hpy8I GTNNAC 3 cut(s) 31, 293, 613
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 8 cut(s) 301, 550, 686, 956, 1127, 1163, 1265, 1270
HpyCH4V TGCA 5 cut(s) 103, 491, 656, 716, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 4 cut(s) 723, 729, 822, 1200
Hsp92II CATG 2 cut(s) 265, 859
Kzo9I GATC 1 cut(s) 1196
LmnI GCTCC 5 cut(s) 25, 643, 775, 781, 902
Lsp1109I GCAGC 2 cut(s) 739, 787
LweI GCATC 4 cut(s) 112, 263, 625, 986
MaeI CTAG 2 cut(s) 281, 1278
MaeIII GTNAC 8 cut(s) 87, 274, 283, 499, 736, 935, 967, 1127
MalI GATC 1 cut(s) 1198
MboI GATC 1 cut(s) 1196
MboII GAAGA 6 cut(s) 565, 786, 1056, 1070, 1098, 1200
MflI RGATCY 1 cut(s) 1196
MluCI AATT 2 cut(s) 49, 995
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 1048
MseI TTAA 1 cut(s) 1285
MslI CAYNNNNRTG 1 cut(s) 1239
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 2 cut(s) 141, 1007
MvaI CCWGG 2 cut(s) 141, 1007
MwoI GCNNNNNNNGC 1 cut(s) 713
NdeII GATC 1 cut(s) 1196
NheI GCTAGC 1 cut(s) 1277
NlaIII CATG 2 cut(s) 265, 859
NlaIV GGNNCC 2 cut(s) 33, 1165
NmeAIII GCCGAG 1 cut(s) 771
NmuCI GTSAC 4 cut(s) 87, 274, 283, 967
OliI CACNNNNGTG 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 1152
PceI AGGCCT 1 cut(s) 1150
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 1048
PfeI GAWTC 7 cut(s) 11, 226, 245, 761, 1019, 1032, 1214
PflMI CCANNNNNTGG 1 cut(s) 673
PkrI GCNGC 3 cut(s) 351, 754, 802
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 139, 1005
PspGI CCWGG 2 cut(s) 139, 1005
PspN4I GGNNCC 2 cut(s) 33, 1165
PspPI GGNCC 3 cut(s) 31, 460, 1000
PspXI VCTCGAGB 1 cut(s) 1152
PsuI RGATCY 1 cut(s) 1196
RsaI GTAC 1 cut(s) 1267
RsaNI GTAC 1 cut(s) 1266
RseI CAYNNNNRTG 1 cut(s) 1239
SaqAI TTAA 1 cut(s) 1285
SatI GCNGC 3 cut(s) 350, 753, 801
Sau3AI GATC 1 cut(s) 1196
Sau96I GGNCC 3 cut(s) 31, 460, 1000
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 141, 1007
SfaNI GCATC 4 cut(s) 112, 263, 625, 986
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 1152
SinI GGWCC 3 cut(s) 31, 460, 1000
SlaI CTCGAG 1 cut(s) 1152
SmiMI CAYNNNNRTG 1 cut(s) 1239
SmlI CTYRAG 3 cut(s) 453, 944, 1152
SmoI CTYRAG 3 cut(s) 453, 944, 1152
Sse9I AATT 2 cut(s) 49, 995
SseBI AGGCCT 1 cut(s) 1150
SsiI CCGC 2 cut(s) 350, 1092
SspMI CTAG 2 cut(s) 281, 1278
StuI AGGCCT 1 cut(s) 1150
StyD4I CCNGG 2 cut(s) 139, 1005
TaaI ACNGT 8 cut(s) 301, 550, 686, 956, 1127, 1163, 1265, 1270
TaqI TCGA 6 cut(s) 117, 207, 438, 810, 1153, 1177
TasI AATT 2 cut(s) 49, 995
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 7 cut(s) 11, 226, 245, 761, 1019, 1032, 1214
Tru1I TTAA 1 cut(s) 1285
Tru9I TTAA 1 cut(s) 1285
TscAI CASTG 2 cut(s) 30, 555
TseFI GTSAC 4 cut(s) 87, 274, 283, 967
TseI GCWGC 2 cut(s) 752, 800
Tsp45I GTSAC 4 cut(s) 87, 274, 283, 967
TspDTI ATGAA 4 cut(s) 278, 498, 897, 1244
TspGWI ACGGA 1 cut(s) 1119
TspRI CASTG 2 cut(s) 30, 555
Van91I CCANNNNNTGG 1 cut(s) 673
VpaK11BI GGWCC 3 cut(s) 31, 460, 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 1152
XmnI GAANNNNTTC 1 cut(s) 1048
XspI CTAG 2 cut(s) 281, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.