Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

4327852 .. 4331255

Gene Structure 3404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1060300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAGTCAGTGACAGCTATGGAAGGCATTGAGAACATGCTACTGTCCTCGGGTTACCACAATTATCGTGACTTAAAAATATTGACTACCGATTCTCAGTTTTCACTCAATGGTGGAGTGATTGTTTTAGTGACTGGGTATTTAACTGGAGATGACAAAGTGCGAAGAAAATTTACTCAAACTTTCTTTCTAGCCCCACAACAGCACGGATACTTTGTCTTGAATGATATCCTTAAATACTTGGATGTTGTGCCAGATAATGTTGTCGAAAGTACACCAGAAGCTCCTGTTCCCTCGAACCATGTTGTTACAGAGCCCTCCGCTGTCGCTGATCAGCCCGTGGTCAGTCAAACTACCCCTTTGGAGGTTGAGATCACTAATGAAAAGAAAGCCAATAATGTGATGGAGACTGTTCCGGAACCTGTTACCAAATACAATGTGAGTGCTGATAATCCCATTGAATCAAGACAGAGTGTTACCCTGAAGGCAACGGAGGACGCAGCTCCTAAAGCCCAGAAGGATGCTCCAAAGAAGTCTTTTGCAGCAGTGGTGAGTGCTTTGAGCGAGAATAAAGCTCCATTTGTTGTGAGGACACCTGTACGCAAACCTGCACCCAAACCTGTTGAGCAGCCGCGTGCACCTGTAACGCCTGAAGCTTTACCTCCCCGAAACAACCGTGCTGTGGAAAAGAATAATGTCCCTGCAGTTAAGTCTCATGCCATTTTCGTTGCCAAGTTGCCCATGGATGCAACTCATGAAGAACTGGAGAAGATATTCAAGCCTTATGGACCCATCAAGCGCAATGGGATTCAAGTTCGAAGCCATTGGGATCAGGGAAACTGTTTTGGGTTTGTGGAATTTGAATCTGCTGACTCCATGCAACGTGCACTTCAGGCATCTCCTATCAAATATGGCAATTATGAGCTACAAATTGAAGAGAGACGAGCCAGCGACAAAGGAAGGTTCTCATCGGGAAGGGGTGGATACCAAAATGACAACTTTAGGGGCCGTGGGAACTACAATGGAGGCCGCGGAAACTACAATGGAGGCCGTGGTTATGGAAGAGACGATCATGAGAAGAGGGGTGAATACCGTGAATTCTCCGGTCCAGCTGCCGGGCGCAATGGAGAAGCTTATCAGCACCAGAGACCTTACCAGAATGGAGGAAAAGCTCCTCGTCAAACATCAAAATCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

401

Amino Acids

44.19

Weight (kDa)

9.16

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	4 - 80	6.6e-18	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	241 - 307	2.8e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
AccII	CGCG	2 cut(s)	634, 1032
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	4 cut(s)	321, 632, 1030, 1032
AclWI	GGATC	1 cut(s)	837
AcsI	RAATTY	3 cut(s)	170, 857, 1097
AcuI	CTGAAG	3 cut(s)	503, 672, 875
AfaI	GTAC	2 cut(s)	274, 600
AfiI	CCNNNNNNNGG	3 cut(s)	364, 682, 1115
AgsI	TTSAA	6 cut(s)	223, 461, 778, 812, 863, 935
Alw21I	GWGCWC	2 cut(s)	640, 889
Alw26I	GTCTC	5 cut(s)	401, 717, 934, 1059, 1141
Alw44I	GTGCAC	2 cut(s)	636, 885
AlwI	GGATC	1 cut(s)	837
Ama87I	CYCGRG	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	3 cut(s)	1006, 1027, 1048
ApaLI	GTGCAC	2 cut(s)	636, 885
ApeKI	GCWGC	5 cut(s)	500, 542, 628, 1112, 1196
ApoI	RAATTY	3 cut(s)	170, 857, 1097
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	2 cut(s)	801, 1122
AspS9I	GGNCC	3 cut(s)	788, 1006, 1106
AsuC2I	CCSGG	1 cut(s)	1117
AsuHPI	GGTGA	2 cut(s)	562, 1097
AsuII	TTCGAA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	788, 1106
BaeGI	GKGCMC	2 cut(s)	640, 889
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	2 cut(s)	640, 889
BbvI	GCAGC	4 cut(s)	512, 554, 640, 1099
BccI	CCATC	2 cut(s)	397, 800
BceAI	ACGGC	2 cut(s)	993, 1035
BciVI	GTATCC	2 cut(s)	203, 977
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	1117
BcoDI	GTCTC	5 cut(s)	401, 717, 934, 1059, 1141
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	702, 1194
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	2 cut(s)	203, 977
BisI	GCNGC	7 cut(s)	501, 543, 629, 632, 1030, 1113, 1197
BlsI	GCNGC	7 cut(s)	502, 544, 630, 633, 1031, 1114, 1198
Bme1390I	CCNGG	1 cut(s)	1117
Bme18I	GGWCC	2 cut(s)	788, 1106
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	788, 1006, 1106
BmiI	GGNNCC	3 cut(s)	420, 790, 1007
BmrFI	CCNGG	1 cut(s)	1117
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	511, 736, 905
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	168, 785
Bpu14I	TTCGAA	1 cut(s)	817
BpuMI	CCSGG	1 cut(s)	1117
BsaI	GGTCTC	1 cut(s)	1141
BsaJI	CCNNGG	6 cut(s)	48, 339, 741, 1009, 1030, 1051
BsaWI	WCCGGW	2 cut(s)	415, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 682, 1115
Bse1I	ACTGG	3 cut(s)	139, 151, 768
Bse3DI	GCAATG	2 cut(s)	808, 1129
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	6 cut(s)	48, 339, 741, 1009, 1030, 1051
BseGI	GGATG	3 cut(s)	250, 526, 751
BseLI	CCNNNNNNNGG	3 cut(s)	364, 682, 1115
BseMI	GCAATG	2 cut(s)	808, 1129
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	139, 151, 768
BseRI	GAGGAG	1 cut(s)	1164
BseSI	GKGCMC	2 cut(s)	640, 889
BseXI	GCAGC	4 cut(s)	512, 554, 640, 1099
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	2 cut(s)	634, 1032
BshFI	GGCC	3 cut(s)	1008, 1029, 1050
BsiHKAI	GWGCWC	2 cut(s)	640, 889
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	3 cut(s)	416, 1104, 1116
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	3 cut(s)	364, 682, 1115
BsmAI	GTCTC	5 cut(s)	401, 717, 934, 1059, 1141
BsmBI	CGTCTC	2 cut(s)	934, 1059
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	1008, 1029, 1050
Bso31I	GGTCTC	1 cut(s)	1141
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	3 cut(s)	318, 640, 889
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	331, 372, 829, 1069
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	4 cut(s)	321, 632, 1030, 1032
BspANI	GGCC	3 cut(s)	1008, 1029, 1050
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	2 cut(s)	634, 1032
BspHI	TCATGA	2 cut(s)	754, 1072
BspLI	GGNNCC	3 cut(s)	420, 790, 1007
BspMAI	CTGCAG	2 cut(s)	706, 1198
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	837
BspT104I	TTCGAA	1 cut(s)	817
BspTNI	GGTCTC	1 cut(s)	1141
BsrDI	GCAATG	2 cut(s)	808, 1129
BsrI	ACTGG	3 cut(s)	139, 151, 768
BssECI	CCNNGG	6 cut(s)	48, 339, 741, 1009, 1030, 1051
BssMI	GATC	4 cut(s)	331, 372, 829, 1069
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	5 cut(s)	45, 412, 677, 842, 1094
Bst6I	CTCTTC	3 cut(s)	930, 1057, 1073
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	636, 949
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	5 cut(s)	339, 741, 1009, 1030, 1051
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	250, 526, 751
BstFNI	CGCG	2 cut(s)	634, 1032
BstHHI	GCGC	2 cut(s)	801, 1122
BstKTI	GATC	4 cut(s)	334, 375, 832, 1072
BstMAI	GTCTC	5 cut(s)	401, 717, 934, 1059, 1141
BstMBI	GATC	4 cut(s)	331, 372, 829, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 893
BstNSI	RCATGY	1 cut(s)	40
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	1115
BstSFI	CTRYAG	2 cut(s)	702, 1194
BstSLI	GKGCMC	2 cut(s)	640, 889
BstUI	CGCG	2 cut(s)	634, 1032
BstV1I	GCAGC	4 cut(s)	512, 554, 640, 1099
BsuI	GTATCC	2 cut(s)	203, 977
BsuRI	GGCC	3 cut(s)	1008, 1029, 1050
BtgI	CCRYGG	5 cut(s)	339, 741, 1009, 1030, 1051
BtsCI	GGATG	3 cut(s)	250, 526, 751
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	15, 552
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	636, 949
CciI	TCATGA	2 cut(s)	754, 1072
CfoI	GCGC	2 cut(s)	801, 1122
Cfr13I	GGNCC	3 cut(s)	788, 1006, 1106
Cfr42I	CCGCGG	1 cut(s)	1033
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	273, 599
CviAII	CATG	7 cut(s)	37, 302, 716, 742, 755, 877, 1073
CviQI	GTAC	2 cut(s)	273, 599
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	4 cut(s)	333, 374, 831, 1071
DpnII	GATC	4 cut(s)	331, 372, 829, 1069
Eam1104I	CTCTTC	3 cut(s)	930, 1057, 1073
EarI	CTCTTC	3 cut(s)	930, 1057, 1073
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	1141
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	788, 1106
Eco57I	CTGAAG	3 cut(s)	503, 672, 875
Eco88I	CYCGRG	1 cut(s)	49
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	1097
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	2 cut(s)	934, 1059
FaeI	CATG	7 cut(s)	40, 305, 719, 745, 758, 880, 1076
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	7 cut(s)	36, 301, 715, 741, 754, 876, 1072
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	7 cut(s)	501, 543, 629, 632, 1030, 1113, 1197
FokI	GGATG	3 cut(s)	257, 533, 758
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	7 cut(s)	501, 543, 629, 632, 1030, 1113, 1197
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	2 cut(s)	800, 1121
GluI	GCNGC	7 cut(s)	501, 543, 629, 632, 1030, 1113, 1197
GsuI	CTGGAG	2 cut(s)	168, 785
HaeIII	GGCC	3 cut(s)	1008, 1029, 1050
HapII	CCGG	3 cut(s)	416, 1104, 1116
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	801, 1122
Hin1II	CATG	7 cut(s)	40, 305, 719, 745, 758, 880, 1076
Hin6I	GCGC	2 cut(s)	799, 1120
HinP1I	GCGC	2 cut(s)	799, 1120
HindIII	AAGCTT	2 cut(s)	654, 1131
HinfI	GANTC	5 cut(s)	92, 461, 808, 863, 872
HpaII	CCGG	3 cut(s)	416, 1104, 1116
HphI	GGTGA	2 cut(s)	562, 1097
Hpy166II	GTNNAC	3 cut(s)	275, 638, 887
Hpy188III	TCNNGA	7 cut(s)	68, 220, 416, 465, 755, 972, 1073
Hpy8I	GTNNAC	3 cut(s)	275, 638, 887
HpyAV	CCTTC	5 cut(s)	17, 478, 511, 954, 969
HpyCH4III	ACNGT	5 cut(s)	45, 412, 677, 842, 1094
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	8 cut(s)	542, 611, 638, 704, 749, 880, 887, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 893
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	883
Hsp92II	CATG	7 cut(s)	40, 305, 719, 745, 758, 880, 1076
HspAI	GCGC	2 cut(s)	799, 1120
Kpn2I	TCCGGA	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	1033
Kzo9I	GATC	4 cut(s)	331, 372, 829, 1069
LmnI	GCTCC	5 cut(s)	289, 508, 529, 580, 1177
Lsp1109I	GCAGC	4 cut(s)	512, 554, 640, 1099
LweI	GCATC	3 cut(s)	511, 736, 905
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	8 cut(s)	10, 53, 68, 130, 307, 424, 475, 643
MalI	GATC	4 cut(s)	333, 374, 831, 1071
MboI	GATC	4 cut(s)	331, 372, 829, 1069
MboII	GAAGA	6 cut(s)	177, 770, 781, 947, 1074, 1090
MhlI	GDGCHC	3 cut(s)	318, 640, 889
MluCI	AATT	6 cut(s)	61, 170, 857, 916, 930, 1097
MlyI	GAGTC	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	5 cut(s)	74, 143, 234, 708, 1201
MspA1I	CMGCKG	3 cut(s)	323, 1032, 1112
MspI	CCGG	3 cut(s)	416, 1104, 1116
MspR9I	CCNGG	1 cut(s)	1117
MvnI	CGCG	2 cut(s)	634, 1032
MwoI	GCNNNNNNNGC	2 cut(s)	509, 893
NciI	CCSGG	1 cut(s)	1117
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	331, 372, 829, 1069
NlaIII	CATG	7 cut(s)	40, 305, 719, 745, 758, 880, 1076
NlaIV	GGNNCC	3 cut(s)	420, 790, 1007
NmuCI	GTSAC	3 cut(s)	10, 68, 130
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	817
PagI	TCATGA	2 cut(s)	754, 1072
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	4 cut(s)	92, 461, 808, 863
PkrI	GCNGC	7 cut(s)	502, 544, 630, 633, 1031, 1114, 1198
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PspEI	GGTNACC	1 cut(s)	53
PspN4I	GGNNCC	3 cut(s)	420, 790, 1007
PspPI	GGNCC	3 cut(s)	788, 1006, 1106
PstI	CTGCAG	2 cut(s)	706, 1198
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	2 cut(s)	274, 600
RsaNI	GTAC	2 cut(s)	273, 599
SacII	CCGCGG	1 cut(s)	1033
SaqAI	TTAA	5 cut(s)	74, 143, 234, 708, 1201
SatI	GCNGC	7 cut(s)	501, 543, 629, 632, 1030, 1113, 1197
Sau3AI	GATC	4 cut(s)	331, 372, 829, 1069
Sau96I	GGNCC	3 cut(s)	788, 1006, 1106
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	1 cut(s)	1117
SduI	GDGCHC	3 cut(s)	318, 640, 889
SfaNI	GCATC	3 cut(s)	511, 736, 905
SfcI	CTRYAG	2 cut(s)	702, 1194
Sfr303I	CCGCGG	1 cut(s)	1033
SfuI	TTCGAA	1 cut(s)	817
SgrBI	CCGCGG	1 cut(s)	1033
SinI	GGWCC	2 cut(s)	788, 1106
Sse9I	AATT	6 cut(s)	61, 170, 857, 916, 930, 1097
SsiI	CCGC	4 cut(s)	321, 632, 1030, 1032
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	1115
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	5 cut(s)	45, 412, 677, 842, 1094
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	3 cut(s)	267, 296, 817
TasI	AATT	6 cut(s)	61, 170, 857, 916, 930, 1097
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	2 cut(s)	634, 1032
TfiI	GAWTC	4 cut(s)	92, 461, 808, 863
Tru1I	TTAA	5 cut(s)	74, 143, 234, 708, 1201
Tru9I	TTAA	5 cut(s)	74, 143, 234, 708, 1201
TscAI	CASTG	2 cut(s)	15, 552
TseFI	GTSAC	3 cut(s)	10, 68, 130
TseI	GCWGC	5 cut(s)	500, 542, 628, 1112, 1196
Tsp45I	GTSAC	3 cut(s)	10, 68, 130
TspDTI	ATGAA	3 cut(s)	17, 396, 771
TspGWI	ACGGA	2 cut(s)	222, 506
TspRI	CASTG	2 cut(s)	15, 552
VneI	GTGCAC	2 cut(s)	636, 885
VpaK11BI	GGWCC	2 cut(s)	788, 1106
XapI	RAATTY	3 cut(s)	170, 857, 1097
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 739
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.