Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

29807339 .. 29810409

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g29890.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCAAATCAGACAGAGGATCCGCCGATCCCAAGCGCAGAGATCGTCGGCACTGCGTTTGTGCATCAGTATTACACAATACTTAATCAAAGCCCGCATGAGGTTTACAAATTTTACTCCAAAGACAGTCTCTTGAGCCGGCCTGAGGCCGACGGTACAATGGCAACAGTTGATACTGTACAAGCCATCAATGAGAAGATATTATCGCTGGACTGTCAGTCTATTCATATACTGACGGTAGATTCTCAGTTTTCTTTGGCCAATGGAGTGATTGTTTTAGTGACTGGCAATATAGTTGGAAATGACAAAGTGAAGAGAAGGTTTACTCAAACGTTCTTTTTAGCCACGCAAGAGACAGGAGGATATTTTGTCTTGAACGACATGTTTAAGTTTGTCATTGATGATAATACAAATAATTACAGTGCTGGTTATGTTGCAGAAGAAACTCCAAAAGTTCCTTTGAACCCAAATGATGAGTTATGCGCTGTTTCTGACGAGCCTATTCCCAGTCAAACAACTTATGTGGAGGTTGATACTGCCAATGGAGATGAAGTTAATCATGTGTTGAAGAATTATGAGGAGTCTGAGAAAAATGTTATTTCTGAAAAAAGTGTTGTTGCTGAGAAAAATGTTGTTGTTGAGAAAAGTGTTGATGCAAGACAGAGTGCTACTAACCATGTCAATGAAGCAGCTTCTTCGGCTTCTTCCAGCATCCAGACGGATGCTCCAAAGAAGAGTTTTGCATCAATTGTGAATGCGTTGAGTGTGAATAAAGCTCCCTTCAAAGCACCCCCGCCTAAACCTGTTGAGCGGCTACGTGTGACTGCCCCTGCATCTGTAGCACCTGAAGCTTTAACCCGAACTAATAGTACTGCTAGTTCTGTGGAAAAGAACAGTGCTCCTGCAGTTAAAGCTCATGCCATTTTTGTTGCAAATTTGCCTATGAGTGCAACTGTGGAAGAATTGGATAAGCTTTTCAAGCAGTTTGGATCCATCAAGCGCGATGGGATTCAAGTCAGAAGCAATAAGGTACAGGGTACATGCTTTGGATTTGTGGAATTTGAATCTGCTAGCTCAATGCAAAGTGCAATAAAGGCATCTCCTATTGATTTTGCCTCTCGTTTGTTATCTATCGAAGAAAGACGAGCAAACAATGATAGAGGAAAGTTTGCTGGAAAAGGTGGATATCGAAATGACAACTTTAGGAGTCGAGAGAACTATGGCCGCGAGAACTATAGTGGAGGAGGAGGCCGTGGGAACTATGGTGGAGGCCGTGGTAATGCGAGAAACGATTTGCGTGGTGAATCAGGTCAATATTCAGGCCAAGCTAGGGGCAATGGCGGACGCTACGCAGAAAGGCCTTATCAGAATGGAGGAAAGGTTGTTCGTCAAACAGCAAAGCCGTTAGCCGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

473

Amino Acids

51.18

Weight (kDa)

6.38

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	16 - 131	1.2e-29	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	308 - 366	7.4e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	811
AccII	CGCG	2 cut(s)	1002, 1227
AciI	CCGC	6 cut(s)	23, 95, 794, 811, 1225, 1341
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	5 cut(s)	14, 22, 27, 984, 997
AcoI	YGGCCR	2 cut(s)	258, 1222
AcsI	RAATTY	3 cut(s)	110, 934, 1058
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	5 cut(s)	157, 180, 871, 1032, 1039
AfiI	CCNNNNNNNGG	3 cut(s)	100, 145, 1330
AflIII	ACRYGT	2 cut(s)	381, 817
AgsI	TTSAA	7 cut(s)	376, 463, 568, 784, 979, 1013, 1064
AhdI	GACNNNNNGTC	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	1368, 1400
AluBI	AGCT	7 cut(s)	692, 776, 851, 914, 973, 1074, 1328
AluI	AGCT	7 cut(s)	692, 776, 851, 914, 973, 1074, 1328
Alw21I	GWGCWC	1 cut(s)	901
Alw26I	GTCTC	2 cut(s)	134, 347
AlwI	GGATC	5 cut(s)	14, 22, 27, 984, 997
AoxI	GGCC	8 cut(s)	140, 147, 258, 1222, 1249, 1270, 1321, 1358
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	3 cut(s)	110, 934, 1058
AspLEI	GCGC	3 cut(s)	38, 485, 1002
AsuHPI	GGTGA	1 cut(s)	1313
AsuNHI	GCTAGC	1 cut(s)	1070
AxyI	CCTNAGG	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	2 cut(s)	19, 989
Bbv12I	GWGCWC	1 cut(s)	901
BbvI	GCAGC	1 cut(s)	701
BccI	CCATC	3 cut(s)	194, 998, 1001
BceAI	ACGGC	3 cut(s)	1236, 1257, 1387
BcgI	CGANNNNNNTGC	2 cut(s)	678, 712
BcoDI	GTCTC	2 cut(s)	134, 347
BfaI	CTAG	3 cut(s)	876, 1071, 1329
BfmI	CTRYAG	3 cut(s)	837, 903, 1234
BisI	GCNGC	3 cut(s)	690, 812, 1225
BlsI	GCNGC	3 cut(s)	691, 813, 1226
BmcAI	AGTACT	1 cut(s)	871
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	21, 991
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	7 cut(s)	73, 643, 712, 720, 752, 842, 1106
BmtI	GCTAGC	1 cut(s)	1074
BmuI	ACTGGG	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	818
BsaJI	CCNNGG	3 cut(s)	1252, 1273, 1410
BsaXI	ACNNNNNCTCC	8 cut(s)	258, 288, 537, 567, 709, 739, 1365, 1395
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 145, 1330
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	289, 507
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	1342
BseDI	CCNNGG	3 cut(s)	1252, 1273, 1410
BseGI	GGATG	2 cut(s)	711, 727
BseLI	CCNNNNNNNGG	3 cut(s)	100, 145, 1330
BseMI	GCAATG	1 cut(s)	1342
BseMII	CTCAG	4 cut(s)	135, 260, 576, 612
BseNI	ACTGG	2 cut(s)	289, 507
BseRI	GAGGAG	3 cut(s)	593, 1257, 1260
BseXI	GCAGC	1 cut(s)	701
Bsh1236I	CGCG	2 cut(s)	1002, 1227
BshFI	GGCC	8 cut(s)	142, 149, 260, 1224, 1251, 1272, 1323, 1360
BsiHKAI	GWGCWC	1 cut(s)	901
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	100, 145, 1330
BsmAI	GTCTC	2 cut(s)	134, 347
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	8 cut(s)	142, 149, 260, 1224, 1251, 1272, 1323, 1360
Bsp1286I	GDGCHC	1 cut(s)	901
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	19, 27, 42, 989
BspACI	CCGC	6 cut(s)	23, 95, 794, 811, 1225, 1341
BspANI	GGCC	8 cut(s)	142, 149, 260, 1224, 1251, 1272, 1323, 1360
BspCNI	CTCAG	4 cut(s)	136, 259, 577, 613
BspFNI	CGCG	2 cut(s)	1002, 1227
BspLI	GGNNCC	2 cut(s)	21, 991
BspMAI	CTGCAG	1 cut(s)	907
BspOI	GCTAGC	1 cut(s)	1074
BspPI	GGATC	5 cut(s)	14, 22, 27, 984, 997
BsrBI	CCGCTC	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	1342
BsrFI	RCCGGY	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	289, 507
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	3 cut(s)	1252, 1273, 1410
BssMI	GATC	4 cut(s)	19, 27, 42, 989
Bst4CI	ACNGT	9 cut(s)	128, 155, 169, 178, 215, 238, 422, 896, 955
Bst6I	CTCTTC	2 cut(s)	308, 728
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	3 cut(s)	95, 140, 1072
BstDEI	CTNAG	4 cut(s)	144, 246, 585, 621
BstDSI	CCRYGG	2 cut(s)	1252, 1273
BstF5I	GGATG	2 cut(s)	711, 727
BstFNI	CGCG	2 cut(s)	1002, 1227
BstHHI	GCGC	3 cut(s)	38, 485, 1002
BstKTI	GATC	4 cut(s)	22, 30, 45, 992
BstMAI	GTCTC	2 cut(s)	134, 347
BstMBI	GATC	4 cut(s)	19, 27, 42, 989
BstMWI	GCNNNNNNNGC	6 cut(s)	698, 839, 848, 911, 979, 1094
BstNSI	RCATGY	2 cut(s)	385, 1044
BstSFI	CTRYAG	3 cut(s)	837, 903, 1234
BstUI	CGCG	2 cut(s)	1002, 1227
BstV1I	GCAGC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	19, 989
BstYI	RGATCY	2 cut(s)	19, 989
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	8 cut(s)	142, 149, 260, 1224, 1251, 1272, 1323, 1360
BtgI	CCRYGG	2 cut(s)	1252, 1273
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	2 cut(s)	711, 727
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	51, 427, 901
Cac8I	GCNNGC	3 cut(s)	95, 140, 1072
CfoI	GCGC	3 cut(s)	38, 485, 1002
Cfr10I	RCCGGY	1 cut(s)	138
CseI	GACGC	1 cut(s)	1353
Csp6I	GTAC	5 cut(s)	156, 179, 870, 1031, 1038
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	7 cut(s)	98, 382, 560, 677, 917, 1041, 1416
CviQI	GTAC	5 cut(s)	156, 179, 870, 1031, 1038
DdeI	CTNAG	4 cut(s)	144, 246, 585, 621
DpnI	GATC	4 cut(s)	21, 29, 44, 991
DpnII	GATC	4 cut(s)	19, 27, 42, 989
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	258, 1222
Eam1104I	CTCTTC	2 cut(s)	308, 728
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	2 cut(s)	308, 728
EciI	GGCGGA	2 cut(s)	12, 1356
Eco147I	AGGCCT	1 cut(s)	1360
Eco32I	GATATC	1 cut(s)	1187
Eco57I	CTGAAG	1 cut(s)	867
Eco81I	CCTNAGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	1187
FaeI	CATG	7 cut(s)	101, 385, 563, 680, 920, 1044, 1419
FatI	CATG	7 cut(s)	97, 381, 559, 676, 916, 1040, 1415
FauI	CCCGC	2 cut(s)	102, 801
Fnu4HI	GCNGC	3 cut(s)	690, 812, 1225
FokI	GGATG	2 cut(s)	698, 734
Fsp4HI	GCNGC	3 cut(s)	690, 812, 1225
FspBI	CTAG	3 cut(s)	876, 1071, 1329
GlaI	GCGC	3 cut(s)	37, 484, 1001
GluI	GCNGC	3 cut(s)	690, 812, 1225
HaeIII	GGCC	8 cut(s)	142, 149, 260, 1224, 1251, 1272, 1323, 1360
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	1353
HhaI	GCGC	3 cut(s)	38, 485, 1002
Hin1II	CATG	7 cut(s)	101, 385, 563, 680, 920, 1044, 1419
Hin6I	GCGC	3 cut(s)	36, 483, 1000
HinP1I	GCGC	3 cut(s)	36, 483, 1000
HindIII	AAGCTT	2 cut(s)	849, 971
HinfI	GANTC	6 cut(s)	242, 581, 1009, 1064, 1207, 1304
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	1313
Hpy166II	GTNNAC	2 cut(s)	106, 324
Hpy188I	TCNGA	6 cut(s)	12, 493, 586, 604, 1019, 1368
Hpy188III	TCNNGA	4 cut(s)	133, 373, 715, 1211
Hpy8I	GTNNAC	2 cut(s)	106, 324
Hpy99I	CGWCG	2 cut(s)	50, 155
HpyAV	CCTTC	2 cut(s)	312, 790
HpyCH4III	ACNGT	9 cut(s)	128, 155, 169, 178, 215, 238, 422, 896, 955
HpyCH4IV	ACGT	2 cut(s)	332, 817
HpyF10VI	GCNNNNNNNGC	6 cut(s)	698, 839, 848, 911, 979, 1094
HpyF3I	CTNAG	4 cut(s)	144, 246, 585, 621
HpySE526I	ACGT	2 cut(s)	332, 817
Hsp92II	CATG	7 cut(s)	101, 385, 563, 680, 920, 1044, 1419
HspAI	GCGC	3 cut(s)	36, 483, 1000
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	19, 27, 42, 989
LmnI	GCTCC	3 cut(s)	730, 781, 904
Lsp1109I	GCAGC	1 cut(s)	701
LweI	GCATC	7 cut(s)	73, 643, 712, 720, 752, 842, 1106
MaeI	CTAG	3 cut(s)	876, 1071, 1329
MaeII	ACGT	2 cut(s)	332, 817
MaeIII	GTNAC	2 cut(s)	280, 820
MalI	GATC	4 cut(s)	21, 29, 44, 991
MbiI	CCGCTC	1 cut(s)	811
MboI	GATC	4 cut(s)	19, 27, 42, 989
MboII	GAAGA	9 cut(s)	208, 325, 452, 580, 687, 696, 745, 971, 1148
MfeI	CAATTG	1 cut(s)	747
MflI	RGATCY	2 cut(s)	19, 989
MhlI	GDGCHC	1 cut(s)	901
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	7 cut(s)	110, 415, 571, 747, 934, 962, 1058
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	590, 1216
MmeI	TCCRAC	1 cut(s)	277
Mox20I	TGGCCA	1 cut(s)	260
MroNI	GCCGGC	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	5 cut(s)	84, 387, 555, 854, 909
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	760
MvnI	CGCG	2 cut(s)	1002, 1227
MwoI	GCNNNNNNNGC	6 cut(s)	698, 839, 848, 911, 979, 1094
NaeI	GCCGGC	1 cut(s)	140
NdeII	GATC	4 cut(s)	19, 27, 42, 989
NgoMIV	GCCGGC	1 cut(s)	138
NheI	GCTAGC	1 cut(s)	1070
NlaIII	CATG	7 cut(s)	101, 385, 563, 680, 920, 1044, 1419
NlaIV	GGNNCC	2 cut(s)	21, 991
NmuCI	GTSAC	2 cut(s)	280, 820
NspI	RCATGY	2 cut(s)	385, 1044
PceI	AGGCCT	1 cut(s)	1360
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	760
PdiI	GCCGGC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	242, 1009, 1064, 1304
PkrI	GCNGC	3 cut(s)	691, 813, 1226
PleI	GAGTC	2 cut(s)	589, 1215
PpsI	GAGTC	2 cut(s)	589, 1215
Ppu21I	YACGTR	1 cut(s)	818
PscI	ACATGT	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	21, 991
PsrI	GAACNNNNNNTAC	4 cut(s)	853, 862, 885, 894
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	19, 989
RsaI	GTAC	5 cut(s)	157, 180, 871, 1032, 1039
RsaNI	GTAC	5 cut(s)	156, 179, 870, 1031, 1038
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	84, 387, 555, 854, 909
SatI	GCNGC	3 cut(s)	690, 812, 1225
Sau3AI	GATC	4 cut(s)	19, 27, 42, 989
ScaI	AGTACT	1 cut(s)	871
SchI	GAGTC	2 cut(s)	590, 1216
SduI	GDGCHC	1 cut(s)	901
SfaNI	GCATC	7 cut(s)	73, 643, 712, 720, 752, 842, 1106
SfcI	CTRYAG	3 cut(s)	837, 903, 1234
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	7 cut(s)	110, 415, 571, 747, 934, 962, 1058
SseBI	AGGCCT	1 cut(s)	1360
SsiI	CCGC	6 cut(s)	23, 95, 794, 811, 1225, 1341
SspI	AATATT	1 cut(s)	1316
SspMI	CTAG	3 cut(s)	876, 1071, 1329
StuI	AGGCCT	1 cut(s)	1360
TaaI	ACNGT	9 cut(s)	128, 155, 169, 178, 215, 238, 422, 896, 955
TaiI	ACGT	2 cut(s)	335, 820
TaqI	TCGA	3 cut(s)	1134, 1189, 1210
TasI	AATT	7 cut(s)	110, 415, 571, 747, 934, 962, 1058
TatI	WGTACW	2 cut(s)	178, 869
TauI	GCSGC	2 cut(s)	814, 1227
TfiI	GAWTC	4 cut(s)	242, 1009, 1064, 1304
Tru1I	TTAA	5 cut(s)	84, 387, 555, 854, 909
Tru9I	TTAA	5 cut(s)	84, 387, 555, 854, 909
TscAI	CASTG	3 cut(s)	58, 427, 901
TseFI	GTSAC	2 cut(s)	280, 820
TseI	GCWGC	1 cut(s)	689
Tsp45I	GTSAC	2 cut(s)	280, 820
TspDTI	ATGAA	3 cut(s)	215, 564, 699
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	3 cut(s)	58, 427, 901
XapI	RAATTY	3 cut(s)	110, 934, 1058
XceI	RCATGY	2 cut(s)	385, 1044
XspI	CTAG	3 cut(s)	876, 1071, 1329
ZrmI	AGTACT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.