Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

59730033 .. 59732961

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGCAAATCAGACAGAGGATCCGCCGATCCCAAGCGCAGAGATTGTGGGCACTGCTTTTGTGCGTCAGTATTACACAATACTTAATCAAAGCCCTCATGAGGTTTACAAGTTTTATTCCAAAGACAGTCTCTTGAGCCGACCCGAGGCAGATGGTACAATGACAACTGTTGAAACTGTACAAGCCATCAATGAGAAGATATTATCGTTGGACTGTCCTTCTATACATATTTTGACTGTAGATTCTCAGTTTTCATTGGCCAATGGAGTAATTGTTTTAGTGACCGGGAATATAGTTGGAAACGACAAAGTGAAAAGAAGATTTACTCAAACTTTCTTTTTAGCCACGCAAGAGACAGGAGGATATTTTGTCTTAAATGACATGTTTAAGTTTGTCATCGATGATAATACAAATAAGTACGCTCCTGGTTATGTTGCAGAAGAGACTCCAAATGTTCCTTTGAACCCAAATGATGAGTTATGTGCTGTTACTGACGAGCCTATTCCCACTCAAACAACTTATGTGGAGGTTGATAGTGCCAATGGAAATGAAGTTAATCATGTGTTGAAGAACTGTGAGGAGTCTGAGAAAAATGTTATTTCTGAAAAAAGTGTTGTTGCTGAGAAGAGTGTTGTTGTTGAAAAAGGAGTTGATGCAAGACAGAGTGTTGCTAACCATGTCAATGAAGCAGCTTCTTCAGCTTCTTCCAACATCCAGAAGGATGCTCCGAAAAAGACTTTTGCATCAGTTGTGAATGCCTTGAGTGTGAATAAAGCACCCTTCAATGTAAGGGCACCCCCACCTAAACCTGTTGAGCGGCCACGTGCAGCGGCCCCTGCACCTTTAGCACCCGAAGCTTTAACCCGAAACAACAGTACTGCTAGTTCTGTGGAAAAGAACAATGGTCCTGCAGTTAAAGCTCATGCCATTTTTGTTGCAAATTTGCCTATGAGTGCAACTGTCGAAGAATTGGATAAGCTTTTCAAGCAGTTTGGATCCATCAAGCACGATGGGATTCAAGTTAGAAGCAATAAGATACAGGGAACATGCTTTGGATTTGTGGAATTTGAATCTGCTAGTTCCATGCAGAGTGCAATAAAGGCATCTCCTATTGAATTTGGCTCTCGTTTGTTATCCATAGAAGAAAGACGAGGCAAGTTGGAATCAAACAATGATAGAGGAAAGTTTCCTTCTGGAAAAGGTGGGTATCGAAATGACAACTTTAGGGGCCGTGAGAACTATAGTGGAGGCGGAGGCCGTGGGAACTATGGTGGAGGCCGTGGTTATGGAAGAAACGATTTACGTGGTGAATCAAATCAATTTTCAGGCCAAGCTAGGGGCAATGGCGGGCGCTATGGAGAAAGGCCTTATCAGAATGGAGGAAAGGTACTTGTTCGTCAAACAGCAAAGCCGTTGGCCGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

475

Amino Acids

51.4

Weight (kDa)

7.63

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	16 - 131	9.6e-30	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	310 - 376	1.6e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	817
AciI	CCGC	6 cut(s)	23, 817, 830, 1251, 1347, 1419
AclWI	GGATC	5 cut(s)	14, 22, 27, 990, 1003
AcoI	YGGCCR	3 cut(s)	258, 818, 1416
AcsI	RAATTY	3 cut(s)	940, 1064, 1115
AcuI	CTGAAG	1 cut(s)	681
AcvI	CACGTG	1 cut(s)	824
AfaI	GTAC	5 cut(s)	157, 180, 419, 877, 1389
AfiI	CCNNNNNNNGG	3 cut(s)	100, 145, 1336
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	9 cut(s)	173, 463, 568, 641, 784, 985, 1019, 1070, 1115
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	6 cut(s)	692, 701, 857, 920, 979, 1334
AluI	AGCT	6 cut(s)	692, 701, 857, 920, 979, 1334
Alw26I	GTCTC	3 cut(s)	134, 347, 437
AlwI	GGATC	5 cut(s)	14, 22, 27, 990, 1003
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	9 cut(s)	258, 818, 831, 1228, 1255, 1276, 1327, 1364, 1416
ApeKI	GCWGC	3 cut(s)	689, 827, 1421
ApoI	RAATTY	3 cut(s)	940, 1064, 1115
AspLEI	GCGC	2 cut(s)	38, 1353
AspS9I	GGNCC	3 cut(s)	832, 905, 1228
AsuC2I	CCSGG	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	1319
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	905
BaeGI	GKGCMC	2 cut(s)	53, 796
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	2 cut(s)	19, 995
BanI	GGYRCC	1 cut(s)	793
BbrPI	CACGTG	1 cut(s)	824
BbvI	GCAGC	2 cut(s)	701, 839
BccI	CCATC	4 cut(s)	146, 194, 1004, 1007
BceAI	ACGGC	4 cut(s)	1215, 1242, 1263, 1396
BciT130I	CCWGG	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	134, 347, 437
BfaI	CTAG	3 cut(s)	882, 1077, 1335
BfmI	CTRYAG	3 cut(s)	237, 909, 1240
BfoI	RGCGCY	1 cut(s)	1354
BisI	GCNGC	6 cut(s)	690, 818, 828, 831, 1419, 1422
BlsI	GCNGC	6 cut(s)	691, 819, 829, 832, 1420, 1423
BmcAI	AGTACT	1 cut(s)	877
Bme1390I	CCNGG	2 cut(s)	286, 426
Bme18I	GGWCC	1 cut(s)	905
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	832, 905, 1228
BmiI	GGNNCC	5 cut(s)	21, 795, 834, 997, 1229
BmrFI	CCNGG	2 cut(s)	286, 426
BmsI	GCATC	4 cut(s)	643, 712, 752, 1112
BpuEI	CTTGAG	2 cut(s)	154, 781
BpuMI	CCSGG	1 cut(s)	286
Bsa29I	ATCGAT	1 cut(s)	399
BsaAI	YACGTR	2 cut(s)	824, 1304
BsaJI	CCNNGG	3 cut(s)	144, 1258, 1279
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 1371, 1401
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 145, 1336
Bse3DI	GCAATG	1 cut(s)	1348
BseBI	CCWGG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	3 cut(s)	144, 1258, 1279
BseGI	GGATG	2 cut(s)	711, 727
BseLI	CCNNNNNNNGG	3 cut(s)	100, 145, 1336
BseMI	GCAATG	1 cut(s)	1348
BseMII	CTCAG	3 cut(s)	260, 576, 612
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	2 cut(s)	53, 796
BseXI	GCAGC	2 cut(s)	701, 839
BsgI	GTGCAG	2 cut(s)	822, 846
BshFI	GGCC	9 cut(s)	260, 820, 833, 1230, 1257, 1278, 1329, 1366, 1418
BshNI	GGYRCC	1 cut(s)	793
BshVI	ATCGAT	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	3 cut(s)	100, 145, 1336
BsmAI	GTCTC	3 cut(s)	134, 347, 437
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	9 cut(s)	260, 820, 833, 1230, 1257, 1278, 1329, 1366, 1418
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	53, 796
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	19, 27, 995
BspACI	CCGC	6 cut(s)	23, 817, 830, 1251, 1347, 1419
BspANI	GGCC	9 cut(s)	260, 820, 833, 1230, 1257, 1278, 1329, 1366, 1418
BspCNI	CTCAG	3 cut(s)	259, 577, 613
BspDI	ATCGAT	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	5 cut(s)	21, 795, 834, 997, 1229
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	5 cut(s)	14, 22, 27, 990, 1003
BspT107I	GGYRCC	1 cut(s)	793
BsrBI	CCGCTC	1 cut(s)	817
BsrDI	GCAATG	1 cut(s)	1348
BsrGI	TGTACA	1 cut(s)	178
BssECI	CCNNGG	3 cut(s)	144, 1258, 1279
BssMI	GATC	3 cut(s)	19, 27, 995
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	8 cut(s)	128, 169, 178, 215, 238, 575, 875, 961
Bst6I	CTCTTC	2 cut(s)	435, 620
BstAUI	TGTACA	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	824, 1304
BstC8I	GCNNGC	1 cut(s)	1349
BstDEI	CTNAG	3 cut(s)	246, 585, 621
BstDSI	CCRYGG	2 cut(s)	1258, 1279
BstF5I	GGATG	2 cut(s)	711, 727
BstH2I	RGCGCY	1 cut(s)	1354
BstHHI	GCGC	2 cut(s)	38, 1353
BstKTI	GATC	3 cut(s)	22, 30, 998
BstMAI	GTCTC	3 cut(s)	134, 347, 437
BstMBI	GATC	3 cut(s)	19, 27, 995
BstMWI	GCNNNNNNNGC	7 cut(s)	698, 836, 845, 854, 917, 985, 1100
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	385, 1050
BstSCI	CCNGG	2 cut(s)	284, 424
BstSFI	CTRYAG	3 cut(s)	237, 909, 1240
BstSLI	GKGCMC	2 cut(s)	53, 796
BstV1I	GCAGC	2 cut(s)	701, 839
BstX2I	RGATCY	2 cut(s)	19, 995
BstYI	RGATCY	2 cut(s)	19, 995
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	9 cut(s)	260, 820, 833, 1230, 1257, 1278, 1329, 1366, 1418
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	2 cut(s)	1258, 1279
BtsCI	GGATG	2 cut(s)	711, 727
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	1349
CciI	TCATGA	1 cut(s)	97
CfoI	GCGC	2 cut(s)	38, 1353
Cfr13I	GGNCC	3 cut(s)	832, 905, 1228
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	5 cut(s)	156, 179, 418, 876, 1388
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	8 cut(s)	98, 382, 560, 677, 923, 1047, 1084, 1425
CviQI	GTAC	5 cut(s)	156, 179, 418, 876, 1388
DdeI	CTNAG	3 cut(s)	246, 585, 621
DpnI	GATC	3 cut(s)	21, 29, 997
DpnII	GATC	3 cut(s)	19, 27, 995
EaeI	YGGCCR	3 cut(s)	258, 818, 1416
Eam1104I	CTCTTC	2 cut(s)	435, 620
EarI	CTCTTC	2 cut(s)	435, 620
EciI	GGCGGA	2 cut(s)	12, 1266
Eco147I	AGGCCT	1 cut(s)	1366
Eco47I	GGWCC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	681
Eco72I	CACGTG	1 cut(s)	824
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	8 cut(s)	101, 385, 563, 680, 926, 1050, 1087, 1428
FatI	CATG	8 cut(s)	97, 381, 559, 676, 922, 1046, 1083, 1424
FauI	CCCGC	1 cut(s)	1340
Fnu4HI	GCNGC	6 cut(s)	690, 818, 828, 831, 1419, 1422
FokI	GGATG	2 cut(s)	698, 734
Fsp4HI	GCNGC	6 cut(s)	690, 818, 828, 831, 1419, 1422
FspBI	CTAG	3 cut(s)	882, 1077, 1335
GlaI	GCGC	2 cut(s)	37, 1352
GluI	GCNGC	6 cut(s)	690, 818, 828, 831, 1419, 1422
HaeII	RGCGCY	1 cut(s)	1354
HaeIII	GGCC	9 cut(s)	260, 820, 833, 1230, 1257, 1278, 1329, 1366, 1418
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	2 cut(s)	38, 1353
Hin1II	CATG	8 cut(s)	101, 385, 563, 680, 926, 1050, 1087, 1428
Hin6I	GCGC	2 cut(s)	36, 1351
HinP1I	GCGC	2 cut(s)	36, 1351
HindIII	AAGCTT	2 cut(s)	855, 977
HinfI	GANTC	7 cut(s)	242, 445, 581, 1015, 1070, 1163, 1310
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	1319
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	12, 586, 604, 729, 1374
Hpy188III	TCNNGA	4 cut(s)	98, 133, 715, 1194
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	228, 712, 790, 1200
HpyCH4III	ACNGT	8 cut(s)	128, 169, 178, 215, 238, 575, 875, 961
HpyCH4IV	ACGT	2 cut(s)	823, 1303
HpyF10VI	GCNNNNNNNGC	7 cut(s)	698, 836, 845, 854, 917, 985, 1100
HpyF3I	CTNAG	3 cut(s)	246, 585, 621
HpySE526I	ACGT	2 cut(s)	823, 1303
Hsp92II	CATG	8 cut(s)	101, 385, 563, 680, 926, 1050, 1087, 1428
HspAI	GCGC	2 cut(s)	36, 1351
Kzo9I	GATC	3 cut(s)	19, 27, 995
LmnI	GCTCC	2 cut(s)	427, 730
Lsp1109I	GCAGC	2 cut(s)	701, 839
LweI	GCATC	4 cut(s)	643, 712, 752, 1112
MaeI	CTAG	3 cut(s)	882, 1077, 1335
MaeII	ACGT	2 cut(s)	823, 1303
MaeIII	GTNAC	2 cut(s)	280, 487
MalI	GATC	3 cut(s)	21, 29, 997
MbiI	CCGCTC	1 cut(s)	817
MboI	GATC	3 cut(s)	19, 27, 995
MflI	RGATCY	2 cut(s)	19, 995
MhlI	GDGCHC	2 cut(s)	53, 796
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	6 cut(s)	270, 940, 968, 1064, 1115, 1319
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	439, 590
MmeI	TCCRAC	4 cut(s)	189, 277, 732, 1140
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	6 cut(s)	84, 374, 387, 555, 860, 915
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	286, 426
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	7 cut(s)	698, 836, 845, 854, 917, 985, 1100
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	19, 27, 995
NlaIII	CATG	8 cut(s)	101, 385, 563, 680, 926, 1050, 1087, 1428
NlaIV	GGNNCC	5 cut(s)	21, 795, 834, 997, 1229
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	385, 1050
PagI	TCATGA	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	1366
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	5 cut(s)	242, 1015, 1070, 1163, 1310
PkrI	GCNGC	6 cut(s)	691, 819, 829, 832, 1420, 1423
PleI	GAGTC	2 cut(s)	439, 589
PmaCI	CACGTG	1 cut(s)	824
PmlI	CACGTG	1 cut(s)	824
PpsI	GAGTC	2 cut(s)	439, 589
Ppu21I	YACGTR	2 cut(s)	824, 1304
PscI	ACATGT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	424
PspCI	CACGTG	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	5 cut(s)	21, 795, 834, 997, 1229
PspPI	GGNCC	3 cut(s)	832, 905, 1228
PsrI	GAACNNNNNNTAC	2 cut(s)	868, 900
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	2 cut(s)	19, 995
RsaI	GTAC	5 cut(s)	157, 180, 419, 877, 1389
RsaNI	GTAC	5 cut(s)	156, 179, 418, 876, 1388
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	6 cut(s)	84, 374, 387, 555, 860, 915
SatI	GCNGC	6 cut(s)	690, 818, 828, 831, 1419, 1422
Sau3AI	GATC	3 cut(s)	19, 27, 995
Sau96I	GGNCC	3 cut(s)	832, 905, 1228
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	2 cut(s)	439, 590
ScrFI	CCNGG	2 cut(s)	286, 426
SduI	GDGCHC	2 cut(s)	53, 796
SfaNI	GCATC	4 cut(s)	643, 712, 752, 1112
SfcI	CTRYAG	3 cut(s)	237, 909, 1240
SinI	GGWCC	1 cut(s)	905
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	2 cut(s)	133, 760
SmoI	CTYRAG	2 cut(s)	133, 760
Sse9I	AATT	6 cut(s)	270, 940, 968, 1064, 1115, 1319
SseBI	AGGCCT	1 cut(s)	1366
SsiI	CCGC	6 cut(s)	23, 817, 830, 1251, 1347, 1419
SspMI	CTAG	3 cut(s)	882, 1077, 1335
StuI	AGGCCT	1 cut(s)	1366
StyD4I	CCNGG	2 cut(s)	284, 424
TaaI	ACNGT	8 cut(s)	128, 169, 178, 215, 238, 575, 875, 961
TaiI	ACGT	2 cut(s)	826, 1306
TaqI	TCGA	3 cut(s)	399, 963, 1210
TasI	AATT	6 cut(s)	270, 940, 968, 1064, 1115, 1319
TatI	WGTACW	2 cut(s)	178, 875
TauI	GCSGC	3 cut(s)	820, 833, 1421
TfiI	GAWTC	5 cut(s)	242, 1015, 1070, 1163, 1310
Tru1I	TTAA	6 cut(s)	84, 374, 387, 555, 860, 915
Tru9I	TTAA	6 cut(s)	84, 374, 387, 555, 860, 915
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	689, 827, 1421
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	243, 564, 699
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	905
XapI	RAATTY	3 cut(s)	940, 1064, 1115
XceI	RCATGY	2 cut(s)	385, 1050
XspI	CTAG	3 cut(s)	882, 1077, 1335
ZrmI	AGTACT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.