Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

3423450 .. 3425686

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAAGTCAGTGACAACTATGGAAGGTATTGAGAACATGCTACTGTCCTCGGATTACCAGAAATATCGTGACTTAGAAATATTGACTACCGATTCTCAGTTTTCACTCAATGGTGGAGTGATTGTTTTAGTGACTGGGTATTTAACTGGAGATGACAAAGTGCGAAGAAAATTTACTCAAACTTTCTTTCTAGCCCCACAACAGCACGGATACTTTGTCTTGAATGATATCTTTAAATACTTGGATGTTGTGCCAGATAATGTTGTCGAAAGTACACCAGAAGCTCCTGTTCCCTCGAACCATGTTGTTACAGAGCCCTCTGCTGTCGCTGATCAGCCTGTGGTCGGTCAAACTACCATTTTGGAGGTTAAGATCACTAATGAAAAGGAAGCCACTAATGTGATGGAGACTGTTCCGGAACCTATTGCTAAATACAGTGTGAGTGCTGATAATCCCATTGAATCAAGACAGAGCGTTACCCTGAAGGCAACGGAGCACGCAGCTCCTAAAGCCCAGAAGGATGCTCCAAAGAAGTCTTTTGCAGCAGTGGTGAGTGCCTTGAGTGAGAATAAAGCTCCATTTGTTGTGAGGACACCTGTGCGCAAACCTGCACCCAAACCTGTTGAGCAGCCGCGTGCACCTGTAACGCCTGAAGCTTTACCTCCCCGAAACAACCGTGCTGTGGACAAGAATAATGTCCCTGCAGTTAAGTCTCATGCCATTTTTGTTGCCAAGTTGCCCATGGATGCAACTCATGAAGAACTGGAGAAGATATTCAAGCCTTATGGACCCATCAAGCGCAATGGGATTCAAGTTCGAAGCCATTGGGATCAGGGAAACTGTTTTGGGTTTGTGGAATTTGAATCTGCTGACTCCATGCAACTTGCACTTCAGGCATCTCCTATCAAATATGGCAATTACGAGCTACAAATTGAAGAAAGACGAGGCAAGTTGAAATCCAGCGACAAAGGAAGGTTCTCATCAGGAAGGGGTGGATACCAAAATGACAACTTTAGGGGCCGCGGAAACTATAATGGAGGCCGTGGGAACTACAATGGAGGCCGCGGAAACTACAATGGAGGCCGTGGTTATGGAAGAGACGATCAGGAGAAAAGGGGTGAATACCGTGAATTCCCCGGTCCAGCTGCCGGGCGCAATGGAGAAGCTTATCAGCACCAGAGACCTTACCAGAATGGAGGAAAAGCTCCTCGTCAAACATCAAAATCTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

412

Amino Acids

45.38

Weight (kDa)

9.2

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	616
AccII	CGCG	3 cut(s)	634, 1023, 1065
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	5 cut(s)	632, 1021, 1023, 1063, 1065
AclWI	GGATC	1 cut(s)	837
AcsI	RAATTY	3 cut(s)	170, 857, 1130
AcuI	CTGAAG	3 cut(s)	503, 672, 875
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	344, 682, 1148
AgsI	TTSAA	7 cut(s)	223, 461, 778, 812, 863, 935, 955
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	9 cut(s)	284, 503, 575, 656, 925, 1145, 1166, 1205, 1232
AluI	AGCT	9 cut(s)	284, 503, 575, 656, 925, 1145, 1166, 1205, 1232
Alw21I	GWGCWC	2 cut(s)	498, 640
Alw26I	GTCTC	4 cut(s)	401, 717, 1092, 1174
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	1 cut(s)	837
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	4 cut(s)	1018, 1039, 1060, 1081
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	5 cut(s)	500, 542, 628, 1145, 1229
ApoI	RAATTY	3 cut(s)	170, 857, 1130
Asp700I	GAANNNNTTC	1 cut(s)	773
AspLEI	GCGC	3 cut(s)	603, 801, 1155
AspS9I	GGNCC	3 cut(s)	788, 1018, 1139
AsuC2I	CCSGG	2 cut(s)	1137, 1150
AsuHPI	GGTGA	2 cut(s)	562, 1130
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	788, 1139
BaeGI	GKGCMC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	157, 189
Bbv12I	GWGCWC	2 cut(s)	498, 640
BbvI	GCAGC	4 cut(s)	512, 554, 640, 1132
BccI	CCATC	2 cut(s)	397, 800
BceAI	ACGGC	2 cut(s)	1026, 1068
BciVI	GTATCC	2 cut(s)	203, 989
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	1137, 1150
BcoDI	GTCTC	4 cut(s)	401, 717, 1092, 1174
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	702, 1227
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	2 cut(s)	203, 989
BisI	GCNGC	8 cut(s)	501, 543, 629, 632, 1021, 1063, 1146, 1230
BlsI	GCNGC	8 cut(s)	502, 544, 630, 633, 1022, 1064, 1147, 1231
Bme1390I	CCNGG	2 cut(s)	1137, 1150
Bme18I	GGWCC	2 cut(s)	788, 1139
BmgT120I	GGNCC	3 cut(s)	788, 1018, 1139
BmiI	GGNNCC	3 cut(s)	420, 790, 1019
BmrFI	CCNGG	2 cut(s)	1137, 1150
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	511, 736, 905
BmuI	ACTGGG	1 cut(s)	144
BpmI	CTGGAG	2 cut(s)	168, 785
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	580
BpuMI	CCSGG	2 cut(s)	1137, 1150
BsaI	GGTCTC	1 cut(s)	1174
BsaJI	CCNNGG	7 cut(s)	48, 741, 1021, 1042, 1063, 1084, 1135
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 682, 1148
Bse1I	ACTGG	3 cut(s)	139, 151, 768
Bse3DI	GCAATG	2 cut(s)	808, 1162
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	7 cut(s)	48, 741, 1021, 1042, 1063, 1084, 1135
BseGI	GGATG	3 cut(s)	250, 526, 751
BseLI	CCNNNNNNNGG	3 cut(s)	344, 682, 1148
BseMI	GCAATG	2 cut(s)	808, 1162
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	3 cut(s)	139, 151, 768
BseRI	GAGGAG	1 cut(s)	1197
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	4 cut(s)	512, 554, 640, 1132
BsgI	GTGCAG	1 cut(s)	594
Bsh1236I	CGCG	3 cut(s)	634, 1023, 1065
BshFI	GGCC	4 cut(s)	1020, 1041, 1062, 1083
BsiHKAI	GWGCWC	2 cut(s)	498, 640
BsiSI	CCGG	3 cut(s)	416, 1137, 1149
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	3 cut(s)	344, 682, 1148
BsmAI	GTCTC	4 cut(s)	401, 717, 1092, 1174
BsmBI	CGTCTC	1 cut(s)	1092
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	4 cut(s)	1020, 1041, 1062, 1083
Bso31I	GGTCTC	1 cut(s)	1174
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	3 cut(s)	318, 498, 640
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	331, 372, 829, 1102
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	5 cut(s)	632, 1021, 1023, 1063, 1065
BspANI	GGCC	4 cut(s)	1020, 1041, 1062, 1083
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	3 cut(s)	634, 1023, 1065
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	3 cut(s)	420, 790, 1019
BspMAI	CTGCAG	2 cut(s)	706, 1231
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	1 cut(s)	837
BspT104I	TTCGAA	1 cut(s)	817
BspTNI	GGTCTC	1 cut(s)	1174
BsrDI	GCAATG	2 cut(s)	808, 1162
BsrI	ACTGG	3 cut(s)	139, 151, 768
BssECI	CCNNGG	7 cut(s)	48, 741, 1021, 1042, 1063, 1084, 1135
BssMI	GATC	4 cut(s)	331, 372, 829, 1102
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	6 cut(s)	45, 412, 437, 677, 842, 1127
Bst6I	CTCTTC	1 cut(s)	1090
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	498, 636
BstDEI	CTNAG	2 cut(s)	73, 96
BstDSI	CCRYGG	5 cut(s)	741, 1021, 1042, 1063, 1084
BstF5I	GGATG	3 cut(s)	250, 526, 751
BstFNI	CGCG	3 cut(s)	634, 1023, 1065
BstHHI	GCGC	3 cut(s)	603, 801, 1155
BstKTI	GATC	4 cut(s)	334, 375, 832, 1105
BstMAI	GTCTC	4 cut(s)	401, 717, 1092, 1174
BstMBI	GATC	4 cut(s)	331, 372, 829, 1102
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 893
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	1135, 1148
BstSFI	CTRYAG	2 cut(s)	702, 1227
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	3 cut(s)	634, 1023, 1065
BstV1I	GCAGC	4 cut(s)	512, 554, 640, 1132
BsuI	GTATCC	2 cut(s)	203, 989
BsuRI	GGCC	4 cut(s)	1020, 1041, 1062, 1083
BtgI	CCRYGG	5 cut(s)	741, 1021, 1042, 1063, 1084
BtsCI	GGATG	3 cut(s)	250, 526, 751
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	3 cut(s)	15, 442, 552
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	498, 636
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	3 cut(s)	603, 801, 1155
Cfr13I	GGNCC	3 cut(s)	788, 1018, 1139
Cfr42I	CCGCGG	2 cut(s)	1024, 1066
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	6 cut(s)	37, 302, 716, 742, 755, 877
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	73, 96
DpnI	GATC	4 cut(s)	333, 374, 831, 1104
DpnII	GATC	4 cut(s)	331, 372, 829, 1102
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	1090
EarI	CTCTTC	1 cut(s)	1090
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	1174
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	788, 1139
Eco57I	CTGAAG	3 cut(s)	503, 672, 875
EcoRI	GAATTC	1 cut(s)	1130
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	1092
FaeI	CATG	6 cut(s)	40, 305, 719, 745, 758, 880
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	6 cut(s)	36, 301, 715, 741, 754, 876
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	8 cut(s)	501, 543, 629, 632, 1021, 1063, 1146, 1230
FokI	GGATG	3 cut(s)	257, 533, 758
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	8 cut(s)	501, 543, 629, 632, 1021, 1063, 1146, 1230
FspBI	CTAG	1 cut(s)	191
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	3 cut(s)	602, 800, 1154
GluI	GCNGC	8 cut(s)	501, 543, 629, 632, 1021, 1063, 1146, 1230
GsuI	CTGGAG	2 cut(s)	168, 785
HaeIII	GGCC	4 cut(s)	1020, 1041, 1062, 1083
HapII	CCGG	3 cut(s)	416, 1137, 1149
HhaI	GCGC	3 cut(s)	603, 801, 1155
Hin1II	CATG	6 cut(s)	40, 305, 719, 745, 758, 880
Hin6I	GCGC	3 cut(s)	601, 799, 1153
HinP1I	GCGC	3 cut(s)	601, 799, 1153
HindIII	AAGCTT	2 cut(s)	654, 1164
HinfI	GANTC	5 cut(s)	92, 461, 808, 863, 872
HpaII	CCGG	3 cut(s)	416, 1137, 1149
HphI	GGTGA	2 cut(s)	562, 1130
Hpy166II	GTNNAC	3 cut(s)	275, 638, 685
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	7 cut(s)	68, 220, 416, 465, 755, 984, 1106
Hpy8I	GTNNAC	3 cut(s)	275, 638, 685
HpyAV	CCTTC	5 cut(s)	17, 478, 511, 966, 981
HpyCH4III	ACNGT	6 cut(s)	45, 412, 437, 677, 842, 1127
HpyCH4V	TGCA	8 cut(s)	542, 611, 638, 704, 749, 880, 887, 1229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 893
HpyF3I	CTNAG	2 cut(s)	73, 96
Hsp92II	CATG	6 cut(s)	40, 305, 719, 745, 758, 880
HspAI	GCGC	3 cut(s)	601, 799, 1153
Kpn2I	TCCGGA	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	331
KspI	CCGCGG	2 cut(s)	1024, 1066
Kzo9I	GATC	4 cut(s)	331, 372, 829, 1102
LmnI	GCTCC	6 cut(s)	289, 493, 508, 529, 580, 1210
Lsp1109I	GCAGC	4 cut(s)	512, 554, 640, 1132
LweI	GCATC	3 cut(s)	511, 736, 905
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	6 cut(s)	10, 68, 130, 307, 475, 643
MalI	GATC	4 cut(s)	333, 374, 831, 1104
MboI	GATC	4 cut(s)	331, 372, 829, 1102
MboII	GAAGA	5 cut(s)	177, 770, 781, 947, 1107
MhlI	GDGCHC	3 cut(s)	318, 498, 640
MluCI	AATT	5 cut(s)	170, 857, 916, 930, 1130
MlyI	GAGTC	1 cut(s)	866
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	773
MseI	TTAA	5 cut(s)	143, 234, 369, 708, 1234
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	3 cut(s)	1023, 1065, 1145
MspI	CCGG	3 cut(s)	416, 1137, 1149
MspR9I	CCNGG	2 cut(s)	1137, 1150
MvnI	CGCG	3 cut(s)	634, 1023, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	509, 893
NciI	CCSGG	2 cut(s)	1137, 1150
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	331, 372, 829, 1102
NlaIII	CATG	6 cut(s)	40, 305, 719, 745, 758, 880
NlaIV	GGNNCC	3 cut(s)	420, 790, 1019
NmuCI	GTSAC	3 cut(s)	10, 68, 130
NsbI	TGCGCA	1 cut(s)	602
NspI	RCATGY	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	817
OliI	CACNNNNGTG	1 cut(s)	398
PagI	TCATGA	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	773
PfeI	GAWTC	4 cut(s)	92, 461, 808, 863
PkrI	GCNGC	8 cut(s)	502, 544, 630, 633, 1022, 1064, 1147, 1231
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	420, 790, 1019
PspPI	GGNCC	3 cut(s)	788, 1018, 1139
PstI	CTGCAG	2 cut(s)	706, 1231
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	398
SacII	CCGCGG	2 cut(s)	1024, 1066
SaqAI	TTAA	5 cut(s)	143, 234, 369, 708, 1234
SatI	GCNGC	8 cut(s)	501, 543, 629, 632, 1021, 1063, 1146, 1230
Sau3AI	GATC	4 cut(s)	331, 372, 829, 1102
Sau96I	GGNCC	3 cut(s)	788, 1018, 1139
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	1137, 1150
SduI	GDGCHC	3 cut(s)	318, 498, 640
SfaNI	GCATC	3 cut(s)	511, 736, 905
SfcI	CTRYAG	2 cut(s)	702, 1227
Sfr303I	CCGCGG	2 cut(s)	1024, 1066
SfuI	TTCGAA	1 cut(s)	817
SgrBI	CCGCGG	2 cut(s)	1024, 1066
SinI	GGWCC	2 cut(s)	788, 1139
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	5 cut(s)	170, 857, 916, 930, 1130
SsiI	CCGC	5 cut(s)	632, 1021, 1023, 1063, 1065
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	1135, 1148
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	6 cut(s)	45, 412, 437, 677, 842, 1127
TaqI	TCGA	3 cut(s)	267, 296, 817
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	5 cut(s)	170, 857, 916, 930, 1130
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	3 cut(s)	634, 1023, 1065
TfiI	GAWTC	4 cut(s)	92, 461, 808, 863
Tru1I	TTAA	5 cut(s)	143, 234, 369, 708, 1234
Tru9I	TTAA	5 cut(s)	143, 234, 369, 708, 1234
TscAI	CASTG	3 cut(s)	15, 442, 552
TseFI	GTSAC	3 cut(s)	10, 68, 130
TseI	GCWGC	5 cut(s)	500, 542, 628, 1145, 1229
Tsp45I	GTSAC	3 cut(s)	10, 68, 130
TspDTI	ATGAA	3 cut(s)	17, 396, 771
TspGWI	ACGGA	2 cut(s)	222, 506
TspRI	CASTG	3 cut(s)	15, 442, 552
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	788, 1139
XapI	RAATTY	3 cut(s)	170, 857, 1130
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 739
XmnI	GAANNNNTTC	1 cut(s)	773
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.