RLG00000006383

Ras GTPase-activating protein-binding protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6655681 .. 6659031
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006383

Sequence Viewer

Length: 1407 bp
ATGGCAAATCAGACAGAGGATCCGCCGATCCCAAGCGCAGAGATTGTGGGCACTGCTTTTGTGCAACAGTATTACACAATACTTAATCAAAGCCCTCATGAGGTTTACAAGTTTTATTCCAAAGACAGTCTCTTGAGCCGACCTGAGGCAGATGGTACAATGACAACAGCTGAAACTGTACAAGCCATCAATGAGAAGATATTATCGTTGGACTGTCCGTCTATACATATTTTGACGGTAGATTCTCAGTTTTCATTGGCCAATGGAGTAATTGTTTTAGTGACCGGGAATATAGTTGGAAACGACGAAGTGAAAAGAAGATTTACTCAAACTTTCTTTTTAGCCACGCAAGAGACAGGAGGATATTTTGTCTTAAATGACATGTTTAAGTTTGTCATCGATGATAATACAAATAAGTACGCTCCTGGTTATGTTGCAGAAGAGACTCCAAATGTTCCTTTGAACCCAAATGATGAGTTATGTGCTGTTACTGACGAGCCTATTCCCGCTCAAACAACTTATGTGGAGGTTGATAGTGCCAACGGAAATGAAGTTAATCATGTGTTGAAGAACTGTGAGGAGTCTGAGAAAAATGTTATTTCTGAAAAAAGTGTTGTTGCTGAGAACAGTGTTGTTGTTGAAAAAGGTGTTGATGCAAGACAGAGTGTTGCTAACCATGTCAATGAAGCAGCTTCTTCAGCTTCTTCCAACATACAGAAGGATGCTCCGAAAAAGACTTTTGCATCAGTTGTGAATGCCTTGAGTGTGAATAAAGCTCCCTTCAATGTGAGGGCACCCCCACCTAAACCTATTGAGCGGCCACGTGCAACGGCCCCTGCACCTGTAGCACCTGAAGCTTTAACCCGAAACAACAGTACTGCTAGTTCTGTGGAAAAGAACAATGTTCCTGCAGTTAAAGCTCATGCCATTTTTGTTGCAAATTTGCCTATGAGTGCAACTGTCGAAGAATTGGATAAGCTTTTCAAGCAGTTTGGATCCATCAAGCGCGATGGGATTCAAGTTAGAAGCAATAAGATACAGGGAACATGCTTTGGATTTGTGGAATTTGAATCTGCTAGTTCCATGCAGAGTGCAATAAAGGCATCTCCTATTGAATTTGGCTCTCGTTTGTTATCCATAGAAGAAAGACGAGCAAACAATGATAGAGGAAAGTTTCCGTCTGGAAAAGGTGGGTATCGAAATGACAACTTTAGGGGCCGCGAGAACAATAGTGGAGGCGGAGGCCGTGGGAACTATGGCCGTGGTTATGGAAGAAACGATTTACGTGGTGAATCAAGTCAATTTTCAGGCCAAGCTAGGGGCAATGGCGGGCGCTATGGAGAAAGGCCTTATCAGAATGGAGGAAAGGTTGTTCGTCAAACAGCAAAGCCGTTGGCCGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

50.65

Weight (kDa)

6.3

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTF2 PF02136 16 - 131 1.6e-29 Nuclear transport factor 2 (NTF2) domain
RRM_1 PF00076 310 - 376 1.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 793
AccBSI CCGCTC 2 cut(s) 509, 817
AccII CGCG 2 cut(s) 1008, 1221
AciI CCGC 7 cut(s) 23, 507, 817, 1219, 1239, 1329, 1398
AclWI GGATC 5 cut(s) 14, 22, 27, 990, 1003
AcoI YGGCCR 4 cut(s) 258, 818, 1258, 1395
AcsI RAATTY 3 cut(s) 940, 1064, 1115
AcuI CTGAAG 2 cut(s) 681, 873
AcvI CACGTG 1 cut(s) 824
AfaI GTAC 4 cut(s) 157, 180, 419, 877
AfiI CCNNNNNNNGG 3 cut(s) 100, 145, 1318
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 8 cut(s) 463, 568, 641, 784, 985, 1019, 1070, 1115
AhdI GACNNNNNGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 424
AloI GAACNNNNNNTCC 2 cut(s) 1356, 1388
AluBI AGCT 8 cut(s) 170, 692, 701, 776, 857, 920, 979, 1316
AluI AGCT 8 cut(s) 170, 692, 701, 776, 857, 920, 979, 1316
Alw26I GTCTC 3 cut(s) 134, 347, 437
AlwI GGATC 5 cut(s) 14, 22, 27, 990, 1003
AoxI GGCC 9 cut(s) 258, 818, 831, 1216, 1243, 1258, 1309, 1346, 1395
ApeKI GCWGC 2 cut(s) 689, 1400
ApoI RAATTY 3 cut(s) 940, 1064, 1115
AspLEI GCGC 3 cut(s) 38, 1008, 1335
AspS9I GGNCC 2 cut(s) 832, 1216
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 1301
AxyI CCTNAGG 1 cut(s) 144
BaeGI GKGCMC 2 cut(s) 53, 796
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 2 cut(s) 19, 995
BanI GGYRCC 1 cut(s) 793
BbrPI CACGTG 1 cut(s) 824
BbvI GCAGC 1 cut(s) 701
BccI CCATC 4 cut(s) 146, 194, 1004, 1007
BceAI ACGGC 4 cut(s) 846, 1230, 1245, 1375
BciT130I CCWGG 1 cut(s) 426
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 134, 347, 437
BfaI CTAG 3 cut(s) 882, 1077, 1317
BfmI CTRYAG 2 cut(s) 843, 909
BfoI RGCGCY 1 cut(s) 1336
BisI GCNGC 5 cut(s) 690, 818, 1219, 1398, 1401
BlsI GCNGC 5 cut(s) 691, 819, 1220, 1399, 1402
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 2 cut(s) 286, 426
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgT120I GGNCC 2 cut(s) 832, 1216
BmiI GGNNCC 5 cut(s) 21, 795, 834, 997, 1217
BmrFI CCNGG 2 cut(s) 286, 426
BmsI GCATC 4 cut(s) 643, 712, 752, 1112
BpuEI CTTGAG 2 cut(s) 154, 781
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 399
BsaAI YACGTR 2 cut(s) 824, 1286
BsaJI CCNNGG 2 cut(s) 1246, 1261
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 1353, 1383
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 145, 1318
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 1330
BseBI CCWGG 1 cut(s) 426
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 1246, 1261
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 3 cut(s) 100, 145, 1318
BseMI GCAATG 1 cut(s) 1330
BseMII CTCAG 4 cut(s) 135, 260, 576, 612
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 2 cut(s) 53, 796
BseXI GCAGC 1 cut(s) 701
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 2 cut(s) 1008, 1221
BshFI GGCC 9 cut(s) 260, 820, 833, 1218, 1245, 1260, 1311, 1348, 1397
BshNI GGYRCC 1 cut(s) 793
BshVI ATCGAT 1 cut(s) 399
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 100, 145, 1318
BsmAI GTCTC 3 cut(s) 134, 347, 437
BsmI GAATGC 1 cut(s) 760
BsnI GGCC 9 cut(s) 260, 820, 833, 1218, 1245, 1260, 1311, 1348, 1397
Bsp1286I GDGCHC 2 cut(s) 53, 796
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 19, 27, 995
BspACI CCGC 7 cut(s) 23, 507, 817, 1219, 1239, 1329, 1398
BspANI GGCC 9 cut(s) 260, 820, 833, 1218, 1245, 1260, 1311, 1348, 1397
BspCNI CTCAG 4 cut(s) 136, 259, 577, 613
BspDI ATCGAT 1 cut(s) 399
BspFNI CGCG 2 cut(s) 1008, 1221
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 5 cut(s) 21, 795, 834, 997, 1217
BspMAI CTGCAG 1 cut(s) 913
BspPI GGATC 5 cut(s) 14, 22, 27, 990, 1003
BspT107I GGYRCC 1 cut(s) 793
BsrBI CCGCTC 2 cut(s) 509, 817
BsrDI GCAATG 1 cut(s) 1330
BsrGI TGTACA 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 1246, 1261
BssMI GATC 3 cut(s) 19, 27, 995
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 9 cut(s) 69, 128, 178, 215, 238, 575, 629, 875, 961
Bst6I CTCTTC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 178
BstBAI YACGTR 2 cut(s) 824, 1286
BstC8I GCNNGC 1 cut(s) 1331
BstDEI CTNAG 4 cut(s) 144, 246, 585, 621
BstDSI CCRYGG 2 cut(s) 1246, 1261
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 2 cut(s) 1008, 1221
BstH2I RGCGCY 1 cut(s) 1336
BstHHI GCGC 3 cut(s) 38, 1008, 1335
BstKTI GATC 3 cut(s) 22, 30, 998
BstMAI GTCTC 3 cut(s) 134, 347, 437
BstMBI GATC 3 cut(s) 19, 27, 995
BstMWI GCNNNNNNNGC 6 cut(s) 698, 845, 854, 917, 985, 1100
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 2 cut(s) 385, 1050
BstSCI CCNGG 2 cut(s) 284, 424
BstSFI CTRYAG 2 cut(s) 843, 909
BstSLI GKGCMC 2 cut(s) 53, 796
BstUI CGCG 2 cut(s) 1008, 1221
BstV1I GCAGC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 19, 995
BstYI RGATCY 2 cut(s) 19, 995
Bsu15I ATCGAT 1 cut(s) 399
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 9 cut(s) 260, 820, 833, 1218, 1245, 1260, 1311, 1348, 1397
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 2 cut(s) 1246, 1261
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 1 cut(s) 727
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 634
Cac8I GCNNGC 1 cut(s) 1331
CciI TCATGA 1 cut(s) 97
CfoI GCGC 3 cut(s) 38, 1008, 1335
Cfr13I GGNCC 2 cut(s) 832, 1216
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 4 cut(s) 156, 179, 418, 876
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 8 cut(s) 98, 382, 560, 677, 923, 1047, 1084, 1404
CviQI GTAC 4 cut(s) 156, 179, 418, 876
DdeI CTNAG 4 cut(s) 144, 246, 585, 621
DpnI GATC 3 cut(s) 21, 29, 997
DpnII GATC 3 cut(s) 19, 27, 995
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 4 cut(s) 258, 818, 1258, 1395
Eam1104I CTCTTC 1 cut(s) 435
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 2 cut(s) 12, 1254
Eco147I AGGCCT 1 cut(s) 1348
Eco57I CTGAAG 2 cut(s) 681, 873
Eco72I CACGTG 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 424
FaeI CATG 8 cut(s) 101, 385, 563, 680, 926, 1050, 1087, 1407
FatI CATG 8 cut(s) 97, 381, 559, 676, 922, 1046, 1083, 1403
FauI CCCGC 2 cut(s) 514, 1322
Fnu4HI GCNGC 5 cut(s) 690, 818, 1219, 1398, 1401
FokI GGATG 1 cut(s) 734
Fsp4HI GCNGC 5 cut(s) 690, 818, 1219, 1398, 1401
FspBI CTAG 3 cut(s) 882, 1077, 1317
GlaI GCGC 3 cut(s) 37, 1007, 1334
GluI GCNGC 5 cut(s) 690, 818, 1219, 1398, 1401
HaeII RGCGCY 1 cut(s) 1336
HaeIII GGCC 9 cut(s) 260, 820, 833, 1218, 1245, 1260, 1311, 1348, 1397
HapII CCGG 1 cut(s) 285
HhaI GCGC 3 cut(s) 38, 1008, 1335
Hin1II CATG 8 cut(s) 101, 385, 563, 680, 926, 1050, 1087, 1407
Hin6I GCGC 3 cut(s) 36, 1006, 1333
HinP1I GCGC 3 cut(s) 36, 1006, 1333
HindIII AAGCTT 2 cut(s) 855, 977
HinfI GANTC 6 cut(s) 242, 445, 581, 1015, 1070, 1292
HpaII CCGG 1 cut(s) 285
HphI GGTGA 1 cut(s) 1301
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 12, 586, 604, 729, 1356
Hpy188III TCNNGA 3 cut(s) 98, 133, 1182
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 712, 790
HpyCH4III ACNGT 9 cut(s) 69, 128, 178, 215, 238, 575, 629, 875, 961
HpyCH4IV ACGT 2 cut(s) 823, 1285
HpyF10VI GCNNNNNNNGC 6 cut(s) 698, 845, 854, 917, 985, 1100
HpyF3I CTNAG 4 cut(s) 144, 246, 585, 621
HpySE526I ACGT 2 cut(s) 823, 1285
Hsp92II CATG 8 cut(s) 101, 385, 563, 680, 926, 1050, 1087, 1407
HspAI GCGC 3 cut(s) 36, 1006, 1333
Kzo9I GATC 3 cut(s) 19, 27, 995
LmnI GCTCC 3 cut(s) 427, 730, 781
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 4 cut(s) 643, 712, 752, 1112
MaeI CTAG 3 cut(s) 882, 1077, 1317
MaeII ACGT 2 cut(s) 823, 1285
MaeIII GTNAC 2 cut(s) 280, 487
MalI GATC 3 cut(s) 21, 29, 997
MbiI CCGCTC 2 cut(s) 509, 817
MboI GATC 3 cut(s) 19, 27, 995
MboII GAAGA 9 cut(s) 208, 330, 452, 580, 687, 696, 977, 1154, 1284
MflI RGATCY 2 cut(s) 19, 995
MhlI GDGCHC 2 cut(s) 53, 796
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 6 cut(s) 270, 940, 968, 1064, 1115, 1301
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 2 cut(s) 439, 590
MmeI TCCRAC 3 cut(s) 189, 277, 732
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 6 cut(s) 84, 374, 387, 555, 860, 915
MslI CAYNNNNRTG 1 cut(s) 681
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 2 cut(s) 286, 426
Mva1269I GAATGC 1 cut(s) 760
MvaI CCWGG 1 cut(s) 426
MvnI CGCG 2 cut(s) 1008, 1221
MwoI GCNNNNNNNGC 6 cut(s) 698, 845, 854, 917, 985, 1100
NciI CCSGG 1 cut(s) 286
NdeII GATC 3 cut(s) 19, 27, 995
NlaIII CATG 8 cut(s) 101, 385, 563, 680, 926, 1050, 1087, 1407
NlaIV GGNNCC 5 cut(s) 21, 795, 834, 997, 1217
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 2 cut(s) 385, 1050
PagI TCATGA 1 cut(s) 97
PceI AGGCCT 1 cut(s) 1348
PciI ACATGT 1 cut(s) 381
PctI GAATGC 1 cut(s) 760
PfeI GAWTC 4 cut(s) 242, 1015, 1070, 1292
PkrI GCNGC 5 cut(s) 691, 819, 1220, 1399, 1402
PleI GAGTC 2 cut(s) 439, 589
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 2 cut(s) 439, 589
Ppu21I YACGTR 2 cut(s) 824, 1286
PscI ACATGT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 424
PspCI CACGTG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 5 cut(s) 21, 795, 834, 997, 1217
PspPI GGNCC 2 cut(s) 832, 1216
PsrI GAACNNNNNNTAC 2 cut(s) 868, 900
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 19, 995
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 4 cut(s) 157, 180, 419, 877
RsaNI GTAC 4 cut(s) 156, 179, 418, 876
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 6 cut(s) 84, 374, 387, 555, 860, 915
SatI GCNGC 5 cut(s) 690, 818, 1219, 1398, 1401
Sau3AI GATC 3 cut(s) 19, 27, 995
Sau96I GGNCC 2 cut(s) 832, 1216
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 2 cut(s) 439, 590
ScrFI CCNGG 2 cut(s) 286, 426
SduI GDGCHC 2 cut(s) 53, 796
SfaNI GCATC 4 cut(s) 643, 712, 752, 1112
SfcI CTRYAG 2 cut(s) 843, 909
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 133, 760
SmoI CTYRAG 2 cut(s) 133, 760
Sse9I AATT 6 cut(s) 270, 940, 968, 1064, 1115, 1301
SseBI AGGCCT 1 cut(s) 1348
SsiI CCGC 7 cut(s) 23, 507, 817, 1219, 1239, 1329, 1398
SspMI CTAG 3 cut(s) 882, 1077, 1317
StuI AGGCCT 1 cut(s) 1348
StyD4I CCNGG 2 cut(s) 284, 424
TaaI ACNGT 9 cut(s) 69, 128, 178, 215, 238, 575, 629, 875, 961
TaiI ACGT 2 cut(s) 826, 1288
TaqI TCGA 3 cut(s) 399, 963, 1198
TasI AATT 6 cut(s) 270, 940, 968, 1064, 1115, 1301
TatI WGTACW 2 cut(s) 178, 875
TauI GCSGC 3 cut(s) 820, 1221, 1400
TfiI GAWTC 4 cut(s) 242, 1015, 1070, 1292
Tru1I TTAA 6 cut(s) 84, 374, 387, 555, 860, 915
Tru9I TTAA 6 cut(s) 84, 374, 387, 555, 860, 915
TscAI CASTG 2 cut(s) 58, 634
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 689, 1400
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 243, 564, 699
TspGWI ACGGA 3 cut(s) 207, 558, 1167
TspRI CASTG 2 cut(s) 58, 634
XapI RAATTY 3 cut(s) 940, 1064, 1115
XceI RCATGY 2 cut(s) 385, 1050
XspI CTAG 3 cut(s) 882, 1077, 1317
ZrmI AGTACT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.