Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

3627319 .. 3628986

Gene Structure 1668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAAATCAATCAGAAAACCTACCTACAGCAACGGACGTGGGCAATATTTTCATAAACCAATATTATGATTTCTTTCAAAACGATTCTCAGGTGCTCCATAAATTTTACCAGGAGTCAAGTGTGCTATCTCGTCCTGGACCAGATGGTTCGACGACGACAGTGACAACTATGGAAGGCATTGAGAGCATGCTACTGTCCATGGGCTACCAGAATTATGGTGATTTAGAGATATCAACCACTGATTCTCAGTTTTCATTCAATGGTGGAGTGATTGTTTTAGTGACTGGGTATTTAACTGGGGATGACAACGTGCGAAGAAATTTTACTCAAACTTTCTTTCTAGCCCCGCAACACAACGGATACTTTGTCTTGAACGATATCTTTAAATATGTGGATGTTGTGCCAAGTAATGTCGATGAAAATACACCACAAGCGCCTGTGCCCTCCAACCATGGTATGTTATATTGTATAGGTGCTGGTTTGCTGCCCGCTGCCGTTGCTGATCAGCCCGTGGTCAGTCAAACTACATCTGTGGAGGTTGAAAATACTAATGGAAAGAGAGGGAATGATGTGATGGAAAATGTTCCGGAACCTGTTACTAAATATAGTGTTAGTGCTGATGATCCCATTGAATCAAGACGGAGTGTTGCCCAGAAAGAAACGGAAGCCACAGCCTCTATCACCCAGAATGATGCTCCGAAGAAGTCTTTTGCAGCAGTGGTGTTACATAACTTTCTCGCTGTTGGGAAAAAGTATTCATACTTTGTACCCTTCTTATTTACTGTTGCAGTTAAGTCTCATGCAATTTTCGTCGCCAAGTTGCCCATGGATGCGACTCGTGAAGAACTGGAGAAGATATTCAAGCCTTACGGACCCATCAAGCGCAACGGGATTCAAGTTAGAAGCAATTGGGTATGCATTACGTTTTGTGTGTACTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

316

Amino Acids

34.79

Weight (kDa)

4.98

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	2 cut(s)	350, 492
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	2 cut(s)	104, 322
AfaI	GTAC	2 cut(s)	771, 938
AgsI	TTSAA	7 cut(s)	80, 262, 376, 545, 635, 865, 899
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	2 cut(s)	111, 136
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	1 cut(s)	620
Aor13HI	TCCGGA	1 cut(s)	589
ApeKI	GCWGC	3 cut(s)	487, 494, 716
ApoI	RAATTY	2 cut(s)	104, 322
Asp700I	GAANNNNTTC	2 cut(s)	585, 860
AspLEI	GCGC	2 cut(s)	439, 888
AspS9I	GGNCC	2 cut(s)	140, 875
AsuHPI	GGTGA	2 cut(s)	233, 676
AvaII	GGWCC	2 cut(s)	140, 875
BaeGI	GKGCMC	1 cut(s)	447
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BauI	CACGAG	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	474, 481, 728
BccI	CCATC	3 cut(s)	140, 571, 887
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	113, 138
BciVI	GTATCC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	3 cut(s)	488, 495, 717
BlsI	GCNGC	3 cut(s)	489, 496, 718
Bme1390I	CCNGG	2 cut(s)	113, 138
Bme18I	GGWCC	2 cut(s)	140, 875
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	140, 875
BmiI	GGNNCC	2 cut(s)	594, 877
BmrFI	CCNGG	2 cut(s)	113, 138
BmrI	ACTGGG	2 cut(s)	297, 309
BmsI	GCATC	2 cut(s)	685, 823
BmuI	ACTGGG	2 cut(s)	297, 309
BpmI	CTGGAG	1 cut(s)	872
BsaJI	CCNNGG	4 cut(s)	201, 454, 513, 828
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	3 cut(s)	292, 304, 855
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	113, 138
BseDI	CCNNGG	4 cut(s)	201, 454, 513, 828
BseGI	GGATG	3 cut(s)	310, 403, 838
BseMII	CTCAG	2 cut(s)	104, 263
BseNI	ACTGG	3 cut(s)	292, 304, 855
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	474, 481, 728
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	99, 447
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	2 cut(s)	505, 625
Bsp19I	CCATGG	3 cut(s)	201, 454, 828
BspACI	CCGC	2 cut(s)	350, 492
BspCNI	CTCAG	2 cut(s)	103, 262
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	594, 877
BspPI	GGATC	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	292, 304, 855
BssECI	CCNNGG	4 cut(s)	201, 454, 513, 828
BssMI	GATC	2 cut(s)	505, 625
BssSI	CACGAG	1 cut(s)	840
BssT1I	CCWWGG	3 cut(s)	201, 454, 828
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	2 cut(s)	113, 138
Bst4CI	ACNGT	3 cut(s)	163, 198, 787
BstC8I	GCNNGC	2 cut(s)	191, 492
BstDEI	CTNAG	2 cut(s)	90, 249
BstDSI	CCRYGG	4 cut(s)	201, 454, 513, 828
BstF5I	GGATG	3 cut(s)	310, 403, 838
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	439, 888
BstKTI	GATC	2 cut(s)	508, 628
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	2 cut(s)	505, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 500
BstNI	CCWGG	2 cut(s)	113, 138
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	111, 136
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	474, 481, 728
BstXI	CCANNNNNNTGG	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	356
BtgI	CCRYGG	4 cut(s)	201, 454, 513, 828
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	310, 403, 838
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	168, 240, 726
Cac8I	GCNNGC	2 cut(s)	191, 492
CfoI	GCGC	2 cut(s)	439, 888
Cfr13I	GGNCC	2 cut(s)	140, 875
Csp6I	GTAC	2 cut(s)	770, 937
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	5 cut(s)	190, 202, 455, 803, 829
CviJI	RGCY	6 cut(s)	207, 347, 511, 671, 677, 868
CviKI_1	RGCY	6 cut(s)	207, 347, 511, 671, 677, 868
CviQI	GTAC	2 cut(s)	770, 937
DdeI	CTNAG	2 cut(s)	90, 249
DpnI	GATC	2 cut(s)	507, 627
DpnII	GATC	2 cut(s)	505, 625
DraI	TTTAAA	1 cut(s)	388
Eco130I	CCWWGG	3 cut(s)	201, 454, 828
Eco32I	GATATC	2 cut(s)	234, 382
Eco47I	GGWCC	2 cut(s)	140, 875
EcoRII	CCWGG	2 cut(s)	111, 136
EcoRV	GATATC	2 cut(s)	234, 382
EcoT14I	CCWWGG	3 cut(s)	201, 454, 828
EcoT22I	ATGCAT	1 cut(s)	923
ErhI	CCWWGG	3 cut(s)	201, 454, 828
FaeI	CATG	5 cut(s)	193, 205, 458, 806, 832
FatI	CATG	5 cut(s)	189, 201, 454, 802, 828
FauI	CCCGC	2 cut(s)	357, 499
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	488, 495, 717
FokI	GGATG	3 cut(s)	317, 410, 845
Fsp4HI	GCNGC	3 cut(s)	488, 495, 717
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	2 cut(s)	438, 887
GluI	GCNGC	3 cut(s)	488, 495, 717
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	440
HapII	CCGG	1 cut(s)	590
HhaI	GCGC	2 cut(s)	439, 888
Hin1II	CATG	5 cut(s)	193, 205, 458, 806, 832
Hin6I	GCGC	2 cut(s)	437, 886
HinP1I	GCGC	2 cut(s)	437, 886
HinfI	GANTC	6 cut(s)	86, 116, 245, 635, 838, 895
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	2 cut(s)	233, 676
Hpy166II	GTNNAC	1 cut(s)	937
Hpy188I	TCNGA	2 cut(s)	16, 702
Hpy188III	TCNNGA	5 cut(s)	373, 590, 639, 842, 945
Hpy8I	GTNNAC	1 cut(s)	937
Hpy99I	CGWCG	3 cut(s)	157, 160, 818
HpyAV	CCTTC	2 cut(s)	170, 784
HpyCH4III	ACNGT	3 cut(s)	163, 198, 787
HpyCH4IV	ACGT	3 cut(s)	39, 312, 926
HpyCH4V	TGCA	4 cut(s)	716, 791, 806, 921
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 500
HpyF3I	CTNAG	2 cut(s)	90, 249
HpySE526I	ACGT	3 cut(s)	39, 312, 926
Hsp92II	CATG	5 cut(s)	193, 205, 458, 806, 832
HspAI	GCGC	2 cut(s)	437, 886
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	505, 625
LmnI	GCTCC	2 cut(s)	102, 703
Lsp1109I	GCAGC	3 cut(s)	474, 481, 728
LweI	GCATC	2 cut(s)	685, 823
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	3 cut(s)	39, 312, 926
MaeIII	GTNAC	4 cut(s)	163, 283, 598, 726
MalI	GATC	2 cut(s)	507, 627
MboI	GATC	2 cut(s)	505, 625
MboII	GAAGA	5 cut(s)	330, 715, 857, 868, 933
MfeI	CAATTG	1 cut(s)	910
MhlI	GDGCHC	2 cut(s)	99, 447
MluCI	AATT	5 cut(s)	104, 214, 322, 807, 910
MlyI	GAGTC	2 cut(s)	125, 832
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	4 cut(s)	457, 532, 557, 688
Mph1103I	ATGCAT	1 cut(s)	923
MroI	TCCGGA	1 cut(s)	589
MroXI	GAANNNNTTC	2 cut(s)	585, 860
MseI	TTAA	3 cut(s)	296, 387, 795
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	113, 138
MunI	CAATTG	1 cut(s)	910
MvaI	CCWGG	2 cut(s)	113, 138
MwoI	GCNNNNNNNGC	2 cut(s)	186, 500
NcoI	CCATGG	3 cut(s)	201, 454, 828
NdeII	GATC	2 cut(s)	505, 625
NlaIII	CATG	5 cut(s)	193, 205, 458, 806, 832
NlaIV	GGNNCC	2 cut(s)	594, 877
NmuCI	GTSAC	2 cut(s)	163, 283
NsiI	ATGCAT	1 cut(s)	923
NspI	RCATGY	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	193
PdmI	GAANNNNTTC	2 cut(s)	585, 860
PfeI	GAWTC	4 cut(s)	86, 245, 635, 895
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	489, 496, 718
PleI	GAGTC	2 cut(s)	124, 832
PpsI	GAGTC	2 cut(s)	124, 832
Psp6I	CCWGG	2 cut(s)	111, 136
PspGI	CCWGG	2 cut(s)	111, 136
PspN4I	GGNNCC	2 cut(s)	594, 877
PspPI	GGNCC	2 cut(s)	140, 875
RsaI	GTAC	2 cut(s)	771, 938
RsaNI	GTAC	2 cut(s)	770, 937
SaqAI	TTAA	3 cut(s)	296, 387, 795
SatI	GCNGC	3 cut(s)	488, 495, 717
Sau3AI	GATC	2 cut(s)	505, 625
Sau96I	GGNCC	2 cut(s)	140, 875
SchI	GAGTC	2 cut(s)	125, 832
ScrFI	CCNGG	2 cut(s)	113, 138
SduI	GDGCHC	2 cut(s)	99, 447
SetI	ASST	9 cut(s)	24, 28, 42, 96, 315, 478, 543, 598, 929
SfaNI	GCATC	2 cut(s)	685, 823
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	140, 875
SphI	GCATGC	1 cut(s)	193
Sse9I	AATT	5 cut(s)	104, 214, 322, 807, 910
SsiI	CCGC	2 cut(s)	350, 492
SspI	AATATT	2 cut(s)	49, 65
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	111, 136
StyI	CCWWGG	3 cut(s)	201, 454, 828
TaaI	ACNGT	3 cut(s)	163, 198, 787
TaiI	ACGT	3 cut(s)	42, 315, 929
TaqI	TCGA	2 cut(s)	152, 417
TasI	AATT	5 cut(s)	104, 214, 322, 807, 910
TatI	WGTACW	1 cut(s)	936
TfiI	GAWTC	4 cut(s)	86, 245, 635, 895
Tru1I	TTAA	3 cut(s)	296, 387, 795
Tru9I	TTAA	3 cut(s)	296, 387, 795
TscAI	CASTG	3 cut(s)	168, 247, 726
TseFI	GTSAC	2 cut(s)	163, 283
TseI	GCWGC	3 cut(s)	487, 494, 716
Tsp45I	GTSAC	2 cut(s)	163, 283
TspDTI	ATGAA	4 cut(s)	43, 246, 435, 750
TspGWI	ACGGA	5 cut(s)	50, 375, 658, 680, 888
TspRI	CASTG	3 cut(s)	168, 247, 726
VpaK11BI	GGWCC	2 cut(s)	140, 875
XapI	RAATTY	2 cut(s)	104, 322
XceI	RCATGY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmnI	GAANNNNTTC	2 cut(s)	585, 860
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.