Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Reverse (-)

1104307 .. 1106905

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGACACCTGAATCAAACGCTCCCTCAGTAGATCCACAATTTGTAGGCAATGGGTTTGTTCAAGAATACTATAACCACCTTTATGATTCAACCTCGGAAGTACACAAATTCTATCTCGAGGATAGTATGATTTCACGGCCTGGTCTCGATGGTGAGATAGTTACTATCAAATCCTTGAAAGGGATTAATGATCAGATAATGTCCATTGACTACAAAAGCTCAAGGATCGAGATTCTAACTGCTGATTCTCAATCAACTTTAAAGAATGGTGTTGTAACTCTAGTCACGGGTTTAGTGATCGGGAACGATGGAGGAAGGAGGAAATTTTCTCAGAGTTTCTTTCTTGTGTCGCGGAATGGAAGCTACTTTGTGCTGAATGATACCTTTAGGTATGTGTCTGATGAGTTTGTTGAACCAGAAGCTACCAAGGAGGTTGAGGAGAGTCAGTCAACAAATGCTATCACTGAGCCTGCAAATGAAAGTGTAGAGGCGGTTATTGTCCCTACTGAAGCTAAAACTACGGTGACGAAGCCAGCAAGTGCCATACCAAACGGACATGCGAAAGTCCCTGAGGAGAAAGTTGTGAATGAAAACAGTAGCTTACCTAAAGCTGCTGAAGCAAAACTTCAAGAGGAGGTTCCCAAGAAATCGTTTGCATTAATTGTTCAATCTCTGGCTCAAAGCGCTGGTACTTTACAGGTTAAAGCCTCGCCGGTCAAGCGTAAACCTGTCGAAAAACCGGTTGCTGCTCCGGAGCGCAAAGCTCCTTCCCCAATTCGTAAACAGGCTTCTGCTGAAAGCATTAAACCACAAGCTCAGGGTAGTTCCATATTTGTTGCAAACTTGCCTATGGATGCGACTATTGAGCAACTTTATGAAACATTTAAAAGTTTTGGAGCTATTAGAAAGGATGGTATCCAAGTCAGAAGTTACCCGGAAAAAAAGAACTGTATTGGGTTTGTGGCATTCGAAAATGGTGAAGCAGTAAAAAATGTCTTTCAGGCTCACAGGGAATCACCAATCAGAATCGGAAACCGAAGAGCATCTATAGAAGAAAAGCGAGGAGGTAACAATCAAAATGGCAACAGAGTCTCTACAAGAAACAACAGTGGTTATAAAAATGAGGATGGTTTCAGACGTGATGGATACAAACCTAGGGGCAGTGGCGTCAATGGAGGACGAGGCTATGGGAGACGGAACAGTGAGTCTAATGGGGATGGTAAAGCATACCAGAACAATGGCCATGGCAATACTGAGGCCAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

422

Amino Acids

46.13

Weight (kDa)

8.93

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	15 - 131	1.7e-30	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	277 - 334	2.8e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1116
AccII	CGCG	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	2 cut(s)	352, 491
AclWI	GGATC	2 cut(s)	26, 233
AcoI	YGGCCR	1 cut(s)	1240
AcsI	RAATTY	2 cut(s)	107, 323
AcuI	CTGAAG	2 cut(s)	528, 636
AcyI	GRCGYC	1 cut(s)	1167
AfaI	GTAC	2 cut(s)	102, 691
AfeI	AGCGCT	1 cut(s)	685
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	739
AgsI	TTSAA	6 cut(s)	62, 90, 178, 413, 629, 668
AjiI	CACGTC	1 cut(s)	1139
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	9 cut(s)	219, 363, 422, 512, 600, 611, 764, 815, 899
AluI	AGCT	9 cut(s)	219, 363, 422, 512, 600, 611, 764, 815, 899
Alw26I	GTCTC	3 cut(s)	149, 1096, 1186
AlwI	GGATC	2 cut(s)	26, 233
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	751
Aor51HI	AGCGCT	1 cut(s)	685
AoxI	GGCC	3 cut(s)	137, 1240, 1257
ApeKI	GCWGC	2 cut(s)	611, 746
ApoI	RAATTY	2 cut(s)	107, 323
AseI	ATTAAT	2 cut(s)	186, 659
AsiGI	ACCGGT	1 cut(s)	739
AspA2I	CCTAGG	1 cut(s)	1154
AspLEI	GCGC	2 cut(s)	686, 759
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	4 cut(s)	164, 535, 989, 1008
AsuII	TTCGAA	1 cut(s)	969
AvaI	CYCGRG	1 cut(s)	116
AvrII	CCTAGG	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	570
BalI	TGGCCA	1 cut(s)	1242
BarI	GAAGNNNNNNTAC	2 cut(s)	772, 804
BbvI	GCAGC	2 cut(s)	598, 733
BccI	CCATC	6 cut(s)	143, 302, 905, 1121, 1136, 1211
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	2 cut(s)	926, 1139
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	3 cut(s)	149, 1096, 1186
BfaI	CTAG	3 cut(s)	281, 1155, 1267
BfmI	CTRYAG	1 cut(s)	1047
BfoI	RGCGCY	1 cut(s)	687
BfuI	GTATCC	2 cut(s)	926, 1139
BisI	GCNGC	2 cut(s)	612, 747
BlnI	CCTAGG	1 cut(s)	1154
BlsI	GCNGC	2 cut(s)	613, 748
Bme1390I	CCNGG	2 cut(s)	141, 935
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	1139
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	2 cut(s)	141, 935
BmsI	GCATC	2 cut(s)	844, 1052
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu14I	TTCGAA	1 cut(s)	969
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	935
BsaHI	GRCGYC	1 cut(s)	1167
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	93, 426, 1154, 1243
BsaWI	WCCGGW	2 cut(s)	739, 751
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	2 cut(s)	712, 739
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	55
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	4 cut(s)	93, 426, 1154, 1243
BseGI	GGATG	4 cut(s)	859, 916, 1132, 1222
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	6 cut(s)	39, 344, 456, 561, 830, 1245
BseRI	GAGGAG	4 cut(s)	452, 587, 647, 1077
BseXI	GCAGC	2 cut(s)	598, 733
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	3 cut(s)	139, 1242, 1259
BshTI	ACCGGT	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	713, 740, 752, 935
BslFI	GGGAC	2 cut(s)	485, 551
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	3 cut(s)	149, 1096, 1186
BsmBI	CGTCTC	1 cut(s)	1186
BsmFI	GGGAC	2 cut(s)	485, 551
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	3 cut(s)	139, 1242, 1259
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	969
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	31, 190, 225, 297
Bsp19I	CCATGG	1 cut(s)	1243
BspACI	CCGC	2 cut(s)	352, 491
BspANI	GGCC	3 cut(s)	139, 1242, 1259
BspCNI	CTCAG	6 cut(s)	38, 343, 457, 562, 829, 1246
BspEI	TCCGGA	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	26, 233
BspQI	GCTCTTC	1 cut(s)	1033
BspT104I	TTCGAA	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	2 cut(s)	712, 739
BssAI	RCCGGY	2 cut(s)	712, 739
BssECI	CCNNGG	4 cut(s)	93, 426, 1154, 1243
BssMI	GATC	4 cut(s)	31, 190, 225, 297
BssNI	GRCGYC	1 cut(s)	1167
BssT1I	CCWWGG	3 cut(s)	426, 1154, 1243
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	5 cut(s)	523, 596, 950, 1109, 1202
Bst6I	CTCTTC	1 cut(s)	1033
BstACI	GRCGYC	1 cut(s)	1167
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	2 cut(s)	471, 534
BstDEI	CTNAG	6 cut(s)	25, 330, 465, 570, 816, 1254
BstDSI	CCRYGG	1 cut(s)	1243
BstF5I	GGATG	4 cut(s)	859, 916, 1132, 1222
BstFNI	CGCG	1 cut(s)	352
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	2 cut(s)	686, 759
BstKTI	GATC	4 cut(s)	34, 193, 228, 300
BstMAI	GTCTC	3 cut(s)	149, 1096, 1186
BstMBI	GATC	4 cut(s)	31, 190, 225, 297
BstMWI	GCNNNNNNNGC	3 cut(s)	617, 683, 718
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	139, 933
BstSFI	CTRYAG	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	598, 733
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	1238
BstYI	RGATCY	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	570
BsuI	GTATCC	2 cut(s)	926, 1139
BsuRI	GGCC	3 cut(s)	139, 1242, 1259
BtgI	CCRYGG	1 cut(s)	1243
BtrI	CACGTC	1 cut(s)	1139
BtsCI	GGATG	4 cut(s)	859, 916, 1132, 1222
BtsI	GCAGTG	1 cut(s)	1168
BtsIMutI	CAGTG	4 cut(s)	462, 1114, 1168, 1207
Cac8I	GCNNGC	2 cut(s)	471, 534
CfoI	GCGC	2 cut(s)	686, 759
Cfr10I	RCCGGY	2 cut(s)	712, 739
CseI	GACGC	1 cut(s)	1156
Csp6I	GTAC	2 cut(s)	101, 690
CspAI	ACCGGT	1 cut(s)	739
CviAII	CATG	2 cut(s)	557, 1244
CviQI	GTAC	2 cut(s)	101, 690
DdeI	CTNAG	6 cut(s)	25, 330, 465, 570, 816, 1254
DpnI	GATC	4 cut(s)	33, 192, 227, 299
DpnII	GATC	4 cut(s)	31, 190, 225, 297
DraI	TTTAAA	2 cut(s)	261, 886
EaeI	YGGCCR	1 cut(s)	1240
Eam1104I	CTCTTC	1 cut(s)	1033
EarI	CTCTTC	1 cut(s)	1033
Eco130I	CCWWGG	3 cut(s)	426, 1154, 1243
Eco31I	GGTCTC	1 cut(s)	149
Eco47III	AGCGCT	1 cut(s)	685
Eco57I	CTGAAG	2 cut(s)	528, 636
Eco81I	CCTNAGG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	3 cut(s)	426, 1154, 1243
ErhI	CCWWGG	3 cut(s)	426, 1154, 1243
Esp3I	CGTCTC	1 cut(s)	1186
FaeI	CATG	2 cut(s)	560, 1247
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FaqI	GGGAC	2 cut(s)	485, 551
FatI	CATG	2 cut(s)	556, 1243
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	612, 747
FokI	GGATG	4 cut(s)	866, 923, 1139, 1229
Fsp4HI	GCNGC	2 cut(s)	612, 747
FspBI	CTAG	3 cut(s)	281, 1155, 1267
GlaI	GCGC	2 cut(s)	685, 758
GluI	GCNGC	2 cut(s)	612, 747
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	3 cut(s)	139, 1242, 1259
HapII	CCGG	4 cut(s)	713, 740, 752, 935
HgaI	GACGC	1 cut(s)	1156
HhaI	GCGC	2 cut(s)	686, 759
Hin1I	GRCGYC	1 cut(s)	1167
Hin1II	CATG	2 cut(s)	560, 1247
Hin6I	GCGC	2 cut(s)	684, 757
HinP1I	GCGC	2 cut(s)	684, 757
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	9 cut(s)	11, 86, 232, 245, 442, 1013, 1026, 1089, 1205
HpaII	CCGG	4 cut(s)	713, 740, 752, 935
HphI	GGTGA	4 cut(s)	164, 535, 989, 1008
Hpy166II	GTNNAC	4 cut(s)	103, 450, 725, 782
Hpy188I	TCNGA	8 cut(s)	97, 195, 333, 400, 926, 1025, 1031, 1136
Hpy188III	TCNNGA	7 cut(s)	62, 116, 146, 229, 301, 629, 752
Hpy8I	GTNNAC	4 cut(s)	103, 450, 725, 782
HpyAV	CCTTC	2 cut(s)	309, 777
HpyCH4III	ACNGT	5 cut(s)	523, 596, 950, 1109, 1202
HpyCH4IV	ACGT	1 cut(s)	1138
HpyCH4V	TGCA	3 cut(s)	473, 656, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	617, 683, 718
HpyF3I	CTNAG	6 cut(s)	25, 330, 465, 570, 816, 1254
HpySE526I	ACGT	1 cut(s)	1138
Hsp92I	GRCGYC	1 cut(s)	1167
Hsp92II	CATG	2 cut(s)	560, 1247
HspAI	GCGC	2 cut(s)	684, 757
Kpn2I	TCCGGA	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	31, 190, 225, 297
LguI	GCTCTTC	1 cut(s)	1033
LmnI	GCTCC	5 cut(s)	25, 754, 754, 769, 896
Lsp1109I	GCAGC	2 cut(s)	598, 733
LweI	GCATC	2 cut(s)	844, 1052
MaeI	CTAG	3 cut(s)	281, 1155, 1267
MaeII	ACGT	1 cut(s)	1138
MaeIII	GTNAC	6 cut(s)	160, 274, 283, 523, 929, 1067
MalI	GATC	4 cut(s)	33, 192, 227, 299
MboI	GATC	4 cut(s)	31, 190, 225, 297
MboII	GAAGA	2 cut(s)	1050, 1064
MflI	RGATCY	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	1242
MluCI	AATT	5 cut(s)	38, 107, 323, 660, 774
MluNI	TGGCCA	1 cut(s)	1242
MlyI	GAGTC	3 cut(s)	451, 1098, 1214
Mox20I	TGGCCA	1 cut(s)	1242
MroI	TCCGGA	1 cut(s)	751
MscI	TGGCCA	1 cut(s)	1242
MseI	TTAA	6 cut(s)	186, 260, 659, 702, 804, 885
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	1242
MspI	CCGG	4 cut(s)	713, 740, 752, 935
MspR9I	CCNGG	2 cut(s)	141, 935
Mva1269I	GAATGC	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	617, 683, 718
NciI	CCSGG	1 cut(s)	935
NcoI	CCATGG	1 cut(s)	1243
NdeII	GATC	4 cut(s)	31, 190, 225, 297
NlaIII	CATG	2 cut(s)	560, 1247
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	2 cut(s)	283, 523
NspI	RCATGY	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	969
PaeR7I	CTCGAG	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	1033
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	6 cut(s)	11, 86, 232, 245, 1013, 1026
PinAI	ACCGGT	1 cut(s)	739
PkrI	GCNGC	2 cut(s)	613, 748
PleI	GAGTC	3 cut(s)	450, 1097, 1213
PpsI	GAGTC	3 cut(s)	450, 1097, 1213
PshBI	ATTAAT	2 cut(s)	186, 659
PsiI	TTATAA	1 cut(s)	1116
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	2 cut(s)	102, 691
RsaNI	GTAC	2 cut(s)	101, 690
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	1033
SaqAI	TTAA	6 cut(s)	186, 260, 659, 702, 804, 885
SatI	GCNGC	2 cut(s)	612, 747
Sau3AI	GATC	4 cut(s)	31, 190, 225, 297
SchI	GAGTC	3 cut(s)	451, 1098, 1214
ScrFI	CCNGG	2 cut(s)	141, 935
SfaNI	GCATC	2 cut(s)	844, 1052
SfcI	CTRYAG	1 cut(s)	1047
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	969
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	116, 220
SmoI	CTYRAG	2 cut(s)	116, 220
Sse9I	AATT	5 cut(s)	38, 107, 323, 660, 774
SsiI	CCGC	2 cut(s)	352, 491
SspMI	CTAG	3 cut(s)	281, 1155, 1267
StyD4I	CCNGG	2 cut(s)	139, 933
StyI	CCWWGG	3 cut(s)	426, 1154, 1243
TaaI	ACNGT	5 cut(s)	523, 596, 950, 1109, 1202
TaiI	ACGT	1 cut(s)	1141
TaqI	TCGA	5 cut(s)	117, 147, 228, 732, 969
TasI	AATT	5 cut(s)	38, 107, 323, 660, 774
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	6 cut(s)	11, 86, 232, 245, 1013, 1026
Tru1I	TTAA	6 cut(s)	186, 260, 659, 702, 804, 885
Tru9I	TTAA	6 cut(s)	186, 260, 659, 702, 804, 885
TscAI	CASTG	4 cut(s)	469, 1114, 1168, 1207
TseFI	GTSAC	2 cut(s)	283, 523
TseI	GCWGC	2 cut(s)	611, 746
Tsp45I	GTSAC	2 cut(s)	283, 523
TspDTI	ATGAA	3 cut(s)	492, 603, 891
TspGWI	ACGGA	2 cut(s)	567, 1210
TspRI	CASTG	4 cut(s)	469, 1114, 1168, 1207
VspI	ATTAAT	2 cut(s)	186, 659
XapI	RAATTY	2 cut(s)	107, 323
XceI	RCATGY	1 cut(s)	560
XhoI	CTCGAG	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	1154
XspI	CTAG	3 cut(s)	281, 1155, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.