Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003567

Physical Location & Seq

Genomic Coordinates Forward (+)

4328770 .. 4331744

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1061800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAAGGCATTGAGAGCATGCTACTGTCCTTGGGCTACCATAATTATGGTGATTTAGAGATATCGACTACTGATTCTCAGTTTTCATTCAATGGTGGAGTGATTGTTTTAGTGACTGGGTATTTAACTGGGGATGACAACGTGCGAAGAAATTTTTCTCAAACTTTCTTTCTTGCCCCGCAACACAACGGATACTTTGTCTTGAACGATATCTTTAAATATGTGGATGTTGTGCCAAGTAATGTCGATGAAAATACACCAGAAGCTCCAGTGCCCTCGAACCATGTTGTTACAGAGCCCGCTGCCGTTGCTGATCAGCCCGTGGTCAGTCAAACTACATCTGTGGAGGTTAAAAATACTAATGGAATGAGAGGGAATGATGTGATGGAAATTATTCCGGAACCTGTTACTAAATATAGTGTTAGTGCTGATGATCCCATTGAATCAAGACGGAGTGTTGCCCTGAAAGAAACGGAAGCCACAGCTTCTAACACCCAGAATGATGCTCCGAAGAAGTCTTTTGCAGCGGTGGTGACTGCTTTGAGTGAGAATAAAGCTCCATTTGTTGTGAGGACACCTGCACGAAAACCTGCACCCAAACCTGTTGAGCAACCGCGTGCACCTGTAACGCCTGAAGCTTTAACTCCCCGAAACAACACTGCTATGGAAAAGAATAATGTCCCTGCAGTTAAGTCTCATGCCATTTTCGTCGCCAAGTTGCCCATGGATGCGACTCGTGAAGAACTGGAGAAGGTATTCAAGCCTTACGGACCCATCAAGCGCAACGGGATTCAAGTTAGAAGCAACTGGAATCAGGGAAACTGTTTCGGGTTTGTGGAATTTGAATCTGCTGACTCCATGCAACGTGCGCTTAAGGCATCCCCGATCAAATGCGGCGAATATGAGCTACACGTTGAAGAAAGACGAGCCGGCGACAAAGGAAGGTTCTCATCAGGAAGGGGTGGCTACCGAAATGACAACTTTAGGGGCCGCGAGAACTATGGGCGTGATAATTACACCGAAGGCCGCGGGAACCACAATGAAGGCCGCGGGAACTACAATGAAGGCCGCGGGAACTACAATGTAGGCCGCGGGAACTACAGTGGAGGCCGTGGTTATGGAAGAGACGATCAGGAGAAGAGGGGCGAATACCGTGAAATATCTGGTTCAGCAGCGAGGGGGAATGCCGGGCGCAATGCAGAAGATTATCAGAACCACAAGTCTTACCAGAATGGAGGAAACGCTCCTCGTCAAACTGCGAAATCCGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

426

Amino Acids

46.72

Weight (kDa)

7.08

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	2 - 74	3.1e-18	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	235 - 293	4.5e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13730 AT1G13730 AT2G03640 AT2G03640 AT2G03640 AT2G03640 AT2G03640
fragaria_vesca	FvH4_4g29890 FvH4_4g29890 FvH4_4g29890 FvH4_4g29890
malus_domestica	MD13G1061800.v1.1 MD16G1060300.v1.1
prunus_persica	Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1 Prupe.1G288100_v2.0.a1
pyrus_communis	pycom13g05430 pycom16g05250
rosa_chinensis	RchiOBHm_Chr4g0438161
rosa_laevigata	RLG00000006383
rosa_roxburghii	Rroxscaffold_5G00379300
rosa_rugosa	Rorug04G0307800 Rorug04G0307900 Rorug04G0308000 Rorug04G0308000 Rorug04G0308100
rosa_samantha	Rh4AG358900 Rh4BG369800 Rh4CG383900 Rh4DG364700
rosa_wichuraiana	Rw0G006350 Rw0G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	2 cut(s)	586, 598
AccII	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
AccIII	TCCGGA	1 cut(s)	397
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	151, 839
AcuI	CTGAAG	1 cut(s)	654
AflII	CTTAAG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	7 cut(s)	91, 205, 443, 760, 794, 845, 917
AluBI	AGCT	5 cut(s)	266, 485, 557, 638, 907
AluI	AGCT	5 cut(s)	266, 485, 557, 638, 907
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	2 cut(s)	699, 1119
Alw44I	GTGCAC	1 cut(s)	618
AlwI	GGATC	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	397
AoxI	GGCC	6 cut(s)	988, 1024, 1045, 1066, 1087, 1108
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	5 cut(s)	302, 524, 1172, 1268, 1271
ApoI	RAATTY	2 cut(s)	151, 839
Asp700I	GAANNNNTTC	3 cut(s)	154, 393, 755
AspLEI	GCGC	3 cut(s)	783, 871, 1194
AspS9I	GGNCC	2 cut(s)	770, 988
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	2 cut(s)	62, 544
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	2 cut(s)	276, 622
BanII	GRGCYC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	5 cut(s)	289, 536, 1184, 1255, 1258
BccI	CCATC	2 cut(s)	379, 782
BceAI	ACGGC	2 cut(s)	290, 1095
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	2 cut(s)	699, 1119
BfmI	CTRYAG	2 cut(s)	684, 1099
BfrI	CTTAAG	1 cut(s)	872
BfuAI	ACCTGC	2 cut(s)	586, 598
BfuI	GTATCC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	1189
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	770, 988
BmiI	GGNNCC	4 cut(s)	402, 772, 989, 1034
BmrFI	CCNGG	1 cut(s)	1189
BmrI	ACTGGG	2 cut(s)	126, 138
BmsI	GCATC	3 cut(s)	493, 718, 887
BmuI	ACTGGG	2 cut(s)	126, 138
BpmI	CTGGAG	2 cut(s)	252, 767
BpuMI	CCSGG	1 cut(s)	1189
BsaJI	CCNNGG	8 cut(s)	30, 321, 723, 1027, 1048, 1069, 1090, 1111
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	5 cut(s)	121, 133, 269, 750, 812
Bse3DI	GCAATG	1 cut(s)	1201
BseAI	TCCGGA	1 cut(s)	397
BseDI	CCNNGG	8 cut(s)	30, 321, 723, 1027, 1048, 1069, 1090, 1111
BseGI	GGATG	4 cut(s)	139, 232, 733, 878
BseMI	GCAATG	1 cut(s)	1201
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	5 cut(s)	121, 133, 269, 750, 812
BseRI	GAGGAG	1 cut(s)	1236
BseSI	GKGCMC	2 cut(s)	276, 622
BseXI	GCAGC	5 cut(s)	289, 536, 1184, 1255, 1258
BsgI	GTGCAG	2 cut(s)	564, 576
Bsh1236I	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
BshFI	GGCC	6 cut(s)	990, 1026, 1047, 1068, 1089, 1110
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	3 cut(s)	398, 930, 1188
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	2 cut(s)	699, 1119
BsmBI	CGTCTC	1 cut(s)	1119
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	1189
BsnI	GGCC	6 cut(s)	990, 1026, 1047, 1068, 1089, 1110
Bsp1286I	GDGCHC	3 cut(s)	276, 300, 622
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	4 cut(s)	313, 433, 885, 1129
Bsp19I	CCATGG	1 cut(s)	723
BspANI	GGCC	6 cut(s)	990, 1026, 1047, 1068, 1089, 1110
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
BspLI	GGNNCC	4 cut(s)	402, 772, 989, 1034
BspMAI	CTGCAG	1 cut(s)	688
BspMI	ACCTGC	2 cut(s)	586, 598
BspPI	GGATC	1 cut(s)	428
BspTI	CTTAAG	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	1201
BsrFI	RCCGGY	1 cut(s)	929
BsrI	ACTGG	5 cut(s)	121, 133, 269, 750, 812
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	8 cut(s)	30, 321, 723, 1027, 1048, 1069, 1090, 1111
BssMI	GATC	4 cut(s)	313, 433, 885, 1129
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	30, 723
Bst2BI	CACGAG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	27, 824, 1103, 1154
Bst6I	CTCTTC	2 cut(s)	1117, 1133
BstAFI	CTTAAG	1 cut(s)	872
BstC8I	GCNNGC	4 cut(s)	20, 300, 618, 931
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	7 cut(s)	321, 723, 1027, 1048, 1069, 1090, 1111
BstF5I	GGATG	4 cut(s)	139, 232, 733, 878
BstFNI	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
BstHHI	GCGC	3 cut(s)	783, 871, 1194
BstKTI	GATC	4 cut(s)	316, 436, 888, 1132
BstMAI	GTCTC	2 cut(s)	699, 1119
BstMBI	GATC	4 cut(s)	313, 433, 885, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 308, 868, 875, 1265
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	1187
BstSFI	CTRYAG	2 cut(s)	684, 1099
BstSLI	GKGCMC	2 cut(s)	276, 622
BstUI	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
BstV1I	GCAGC	5 cut(s)	289, 536, 1184, 1255, 1258
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	6 cut(s)	990, 1026, 1047, 1068, 1089, 1110
BtgI	CCRYGG	7 cut(s)	321, 723, 1027, 1048, 1069, 1090, 1111
BtsCI	GGATG	4 cut(s)	139, 232, 733, 878
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	3 cut(s)	276, 657, 1108
BveI	ACCTGC	2 cut(s)	586, 598
Cac8I	GCNNGC	4 cut(s)	20, 300, 618, 931
CfoI	GCGC	3 cut(s)	783, 871, 1194
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	770, 988
Cfr42I	CCGCGG	4 cut(s)	1030, 1051, 1072, 1093
CviAII	CATG	5 cut(s)	19, 284, 698, 724, 859
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	4 cut(s)	315, 435, 887, 1131
DpnII	GATC	4 cut(s)	313, 433, 885, 1129
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	1117, 1133
EarI	CTCTTC	2 cut(s)	1117, 1133
Eco130I	CCWWGG	2 cut(s)	30, 723
Eco24I	GRGCYC	1 cut(s)	300
Eco32I	GATATC	2 cut(s)	63, 211
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	654
EcoRV	GATATC	2 cut(s)	63, 211
EcoT14I	CCWWGG	2 cut(s)	30, 723
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	30, 723
Esp3I	CGTCTC	1 cut(s)	1119
FaeI	CATG	5 cut(s)	22, 287, 701, 727, 862
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	5 cut(s)	18, 283, 697, 723, 858
FauI	CCCGC	6 cut(s)	186, 307, 1022, 1043, 1064, 1085
FbaI	TGATCA	1 cut(s)	313
FokI	GGATG	4 cut(s)	146, 239, 740, 865
FriOI	GRGCYC	1 cut(s)	300
GlaI	GCGC	3 cut(s)	782, 870, 1193
GsuI	CTGGAG	2 cut(s)	252, 767
HaeIII	GGCC	6 cut(s)	990, 1026, 1047, 1068, 1089, 1110
HapII	CCGG	3 cut(s)	398, 930, 1188
HhaI	GCGC	3 cut(s)	783, 871, 1194
Hin1II	CATG	5 cut(s)	22, 287, 701, 727, 862
Hin6I	GCGC	3 cut(s)	781, 869, 1192
HinP1I	GCGC	3 cut(s)	781, 869, 1192
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	7 cut(s)	74, 443, 733, 790, 811, 845, 854
HpaII	CCGG	3 cut(s)	398, 930, 1188
HphI	GGTGA	2 cut(s)	62, 544
Hpy166II	GTNNAC	1 cut(s)	620
Hpy188I	TCNGA	2 cut(s)	510, 1212
Hpy188III	TCNNGA	6 cut(s)	202, 398, 447, 737, 954, 1133
Hpy8I	GTNNAC	1 cut(s)	620
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	6 cut(s)	745, 936, 951, 1016, 1037, 1058
HpyCH4III	ACNGT	4 cut(s)	27, 824, 1103, 1154
HpyCH4IV	ACGT	3 cut(s)	141, 865, 912
HpyCH4V	TGCA	7 cut(s)	524, 581, 593, 620, 686, 862, 1199
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 308, 868, 875, 1265
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	3 cut(s)	141, 865, 912
Hsp92II	CATG	5 cut(s)	22, 287, 701, 727, 862
HspAI	GCGC	3 cut(s)	781, 869, 1192
Kpn2I	TCCGGA	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	929
KroNI	GCCGGC	1 cut(s)	931
Ksp22I	TGATCA	1 cut(s)	313
KspI	CCGCGG	4 cut(s)	1030, 1051, 1072, 1093
Kzo9I	GATC	4 cut(s)	313, 433, 885, 1129
LmnI	GCTCC	4 cut(s)	271, 511, 562, 1249
Lsp1109I	GCAGC	5 cut(s)	289, 536, 1184, 1255, 1258
LweI	GCATC	3 cut(s)	493, 718, 887
MaeII	ACGT	3 cut(s)	141, 865, 912
MaeIII	GTNAC	5 cut(s)	112, 289, 406, 532, 625
MalI	GATC	4 cut(s)	315, 435, 887, 1131
MboI	GATC	4 cut(s)	313, 433, 885, 1129
MboII	GAAGA	7 cut(s)	159, 523, 752, 929, 1134, 1150, 1214
MhlI	GDGCHC	3 cut(s)	276, 300, 622
MluCI	AATT	5 cut(s)	43, 151, 390, 839, 1012
MlyI	GAGTC	2 cut(s)	727, 848
MnlI	CCTC	9 cut(s)	286, 340, 365, 564, 1100, 1134, 1170, 1229, 1257
MroI	TCCGGA	1 cut(s)	397
MroNI	GCCGGC	1 cut(s)	929
MroXI	GAANNNNTTC	3 cut(s)	154, 393, 755
MseI	TTAA	7 cut(s)	125, 216, 351, 641, 690, 873, 1276
MslI	CAYNNNNRTG	2 cut(s)	45, 662
MspA1I	CMGCKG	7 cut(s)	302, 527, 1029, 1050, 1071, 1092, 1268
MspCI	CTTAAG	1 cut(s)	872
MspI	CCGG	3 cut(s)	398, 930, 1188
MspR9I	CCNGG	1 cut(s)	1189
Mva1269I	GAATGC	1 cut(s)	1189
MvnI	CGCG	6 cut(s)	616, 993, 1029, 1050, 1071, 1092
MwoI	GCNNNNNNNGC	5 cut(s)	15, 308, 868, 875, 1265
NaeI	GCCGGC	1 cut(s)	931
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	1 cut(s)	723
NdeII	GATC	4 cut(s)	313, 433, 885, 1129
NgoMIV	GCCGGC	1 cut(s)	929
NlaIII	CATG	5 cut(s)	22, 287, 701, 727, 862
NlaIV	GGNNCC	4 cut(s)	402, 772, 989, 1034
NmuCI	GTSAC	2 cut(s)	112, 532
NspI	RCATGY	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	586
PctI	GAATGC	1 cut(s)	1189
PdiI	GCCGGC	1 cut(s)	931
PdmI	GAANNNNTTC	3 cut(s)	154, 393, 755
PfeI	GAWTC	5 cut(s)	74, 443, 790, 811, 845
PleI	GAGTC	2 cut(s)	727, 848
PpsI	GAGTC	2 cut(s)	727, 848
PspN4I	GGNNCC	4 cut(s)	402, 772, 989, 1034
PspPI	GGNCC	2 cut(s)	770, 988
PstI	CTGCAG	1 cut(s)	688
RseI	CAYNNNNRTG	2 cut(s)	45, 662
SacII	CCGCGG	4 cut(s)	1030, 1051, 1072, 1093
SaqAI	TTAA	7 cut(s)	125, 216, 351, 641, 690, 873, 1276
Sau3AI	GATC	4 cut(s)	313, 433, 885, 1129
Sau96I	GGNCC	2 cut(s)	770, 988
SchI	GAGTC	2 cut(s)	727, 848
ScrFI	CCNGG	1 cut(s)	1189
SduI	GDGCHC	3 cut(s)	276, 300, 622
SfaNI	GCATC	3 cut(s)	493, 718, 887
SfcI	CTRYAG	2 cut(s)	684, 1099
Sfr303I	CCGCGG	4 cut(s)	1030, 1051, 1072, 1093
SgrBI	CCGCGG	4 cut(s)	1030, 1051, 1072, 1093
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	45, 662
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	5 cut(s)	43, 151, 390, 839, 1012
StyD4I	CCNGG	1 cut(s)	1187
StyI	CCWWGG	2 cut(s)	30, 723
TaaI	ACNGT	4 cut(s)	27, 824, 1103, 1154
TaiI	ACGT	3 cut(s)	144, 868, 915
TaqI	TCGA	3 cut(s)	65, 246, 278
TasI	AATT	5 cut(s)	43, 151, 390, 839, 1012
TauI	GCSGC	6 cut(s)	897, 993, 1029, 1050, 1071, 1092
TfiI	GAWTC	5 cut(s)	74, 443, 790, 811, 845
Tru1I	TTAA	7 cut(s)	125, 216, 351, 641, 690, 873, 1276
Tru9I	TTAA	7 cut(s)	125, 216, 351, 641, 690, 873, 1276
TscAI	CASTG	3 cut(s)	276, 664, 1108
TseFI	GTSAC	2 cut(s)	112, 532
TseI	GCWGC	5 cut(s)	302, 524, 1172, 1268, 1271
Tsp45I	GTSAC	2 cut(s)	112, 532
TspDTI	ATGAA	4 cut(s)	75, 264, 1056, 1077
TspGWI	ACGGA	4 cut(s)	204, 466, 488, 783
TspRI	CASTG	3 cut(s)	276, 664, 1108
Vha464I	CTTAAG	1 cut(s)	872
VneI	GTGCAC	1 cut(s)	618
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	2 cut(s)	151, 839
XceI	RCATGY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XmnI	GAANNNNTTC	3 cut(s)	154, 393, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.