AT1G13770

root uv-b sensitive

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005337
Physical Location & Seq
Forward (+)
4721574 .. 4724520
2947 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13770.4

Sequence Viewer

Length: 1323 bp
ATGAGAGAAGAACAAGTCTCTGATTGCGGATCGATTACTCTTGAAGAATGGAATGGTTCTTCTTCCACTAAGCTATTCAAAACAGCAACCATCACTGCCTCCTCTTCTCTCTCTATCCAAAGGTCTGCTAATCGCTTTAATCATGTGTGGAGACGAGTTCTTCAAGCATTTGTACCAGAGGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAGGGCCTCTCAACTTATACAAAGATGATGCTTTCCACTCAGGCTCTTTTGAGTGCAATTGGCGTTGGTGAGAAATCCGCAACTGTTATAGGTGCTACATTTCAGTGGTTTCTGAGGGATTTTACTGGGATGCTTGGAGGTATATTGTTCACATTTTATCAGGGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGGAATGCTAATGGACCTTCTTTCTCCTTTGTTTCCATCTGCCTTTATCGTTGTGGTTTGCTTAGGGAGCCTATCAAGATCATTTACTGGTGTTGCAAGTGGAGCAACCAGAGCAGCTCTAACACAGCACTTTGCTCTTCAAGACAATGCAGCGGATATATCTGCTAAGGAAGGAAGCCAAGAGACTATGGCAACTATGATGGGTATGTCATTGGGAATGTTGCTAGCTCGGTTTACCTCTGGAAACCCTATGGCTATTTGGCTTTCGTTTCTCTCTCTCACCGTGTTTCATATGTATGCAAACTATAGAGCTGTCCGGTGTCTTGTATTGAATTCATTAAACTTTGAGAGGAGTTCAATTCTTCTAACACATTTCATTCAAACTGGCCAAGTTCTCTCTCCCGAACAGGTTTCTTCAATGGAGGGTGTATTGCCCTTGTGGGCCACTTCATTGAGGTCAACGAATTCAAAGCCATTGCATAAGAGAGTGCAGTTAGGTGTGAGAGTTTCCTCTCTCCCTCGTCTAGATATGTTGCAGCTGCTAAATGGTGTTGGAGCTTCTTCATACAAGAATGCTAAGTATTTATTGGCTCACATAAAGGGAAATGTTAGTGTGATCTTGCACAAAGATTCAAAACCTGCAGATGTGTTGAAATCATATATTCATGCCATTGTTTTGGCAAACCTTATGGAAAAGAGCACATCTTTTTATTCAGAAGGAGAAGCTTGGATTGATAAACACTATGACGAATTGCTCCACAAGCTGAGATCAGGAGGTTGGAAAACAGAGCGTCTTCTTTCGCCTTCCATTACTTGGAGAGCTAATTGGATATCTCACACTTCCGCTGCTAAGTTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

440

Amino Acids

48.61

Weight (kDa)

9.22

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 46 - 282 2.5e-90 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 1275
AciI CCGC 4 cut(s) 27, 315, 614, 1305
AclWI GGATC 1 cut(s) 37
AcoI YGGCCR 1 cut(s) 847
AcsI RAATTY 2 cut(s) 793, 925
AcyI GRCGYC 1 cut(s) 433
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 1275
AjnI CCWGG 2 cut(s) 187, 408
AluBI AGCT 9 cut(s) 73, 578, 689, 773, 1000, 1019, 1187, 1225, 1283
AluI AGCT 9 cut(s) 73, 578, 689, 773, 1000, 1019, 1187, 1225, 1283
Alw21I GWGCWC 1 cut(s) 1163
Alw26I GTCTC 3 cut(s) 22, 145, 638
AlwI GGATC 1 cut(s) 37
AoxI GGCC 3 cut(s) 241, 847, 903
ApeKI GCWGC 5 cut(s) 575, 611, 997, 1000, 1307
ApoI RAATTY 2 cut(s) 793, 925
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 3 cut(s) 241, 475, 903
AsuHPI GGTGA 2 cut(s) 317, 733
AsuNHI GCTAGC 1 cut(s) 685
AvaII GGWCC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 849
BanI GGYRCC 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 1247
Bbv12I GWGCWC 1 cut(s) 1163
BbvI GCAGC 5 cut(s) 587, 623, 987, 1009, 1294
BccI CCATC 3 cut(s) 98, 505, 655
BciT130I CCWGG 2 cut(s) 189, 410
BcoDI GTCTC 3 cut(s) 22, 145, 638
BfaI CTAG 3 cut(s) 437, 686, 986
BfmI CTRYAG 2 cut(s) 766, 1101
BfoI RGCGCY 1 cut(s) 436
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 5 cut(s) 576, 612, 998, 1001, 1308
BlsI GCNGC 5 cut(s) 577, 613, 999, 1002, 1309
Bme1390I CCNGG 2 cut(s) 189, 410
Bme18I GGWCC 1 cut(s) 475
BmgT120I GGNCC 3 cut(s) 241, 475, 903
BmiI GGNNCC 3 cut(s) 403, 434, 530
BmrFI CCNGG 2 cut(s) 189, 410
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 255, 357
BmtI GCTAGC 1 cut(s) 689
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 1247
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 2 cut(s) 523, 627
Bsa29I ATCGAT 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 433
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 1 cut(s) 1275
Bse1I ACTGG 3 cut(s) 367, 553, 850
Bse3DI GCAATG 2 cut(s) 424, 935
BseBI CCWGG 2 cut(s) 189, 410
BseCI ATCGAT 1 cut(s) 32
BseGI GGATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 1275
BseMI GCAATG 2 cut(s) 424, 935
BseMII CTCAG 3 cut(s) 290, 341, 1217
BseNI ACTGG 3 cut(s) 367, 553, 850
BseRI GAGGAG 2 cut(s) 91, 826
BseXI GCAGC 5 cut(s) 587, 623, 987, 1009, 1294
BsgI GTGCAG 1 cut(s) 971
BshFI GGCC 3 cut(s) 243, 849, 905
BshNI GGYRCC 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 1163
BsiSI CCGG 1 cut(s) 778
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 1275
BsmAI GTCTC 3 cut(s) 22, 145, 638
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 471, 1039
BsnI GGCC 3 cut(s) 243, 849, 905
Bsp1286I GDGCHC 1 cut(s) 1163
Bsp143I GATC 4 cut(s) 29, 539, 1077, 1229
BspACI CCGC 4 cut(s) 27, 315, 614, 1305
BspANI GGCC 3 cut(s) 243, 849, 905
BspCNI CTCAG 3 cut(s) 289, 342, 1218
BspDI ATCGAT 1 cut(s) 32
BspLI GGNNCC 3 cut(s) 403, 434, 530
BspMAI CTGCAG 1 cut(s) 1105
BspMI ACCTGC 1 cut(s) 1108
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 2 cut(s) 424, 935
BsrI ACTGG 3 cut(s) 367, 553, 850
BssMI GATC 4 cut(s) 29, 539, 1077, 1229
BssNI GRCGYC 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 189, 410
Bst4CI ACNGT 2 cut(s) 322, 745
Bst6I CTCTTC 2 cut(s) 109, 603
BstACI GRCGYC 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 8 cut(s) 69, 276, 350, 523, 627, 1038, 1226, 1311
BstF5I GGATG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 4 cut(s) 32, 542, 1080, 1232
BstMAI GTCTC 3 cut(s) 22, 145, 638
BstMBI GATC 4 cut(s) 29, 539, 1077, 1229
BstMWI GCNNNNNNNGC 5 cut(s) 189, 528, 563, 572, 1222
BstNI CCWGG 2 cut(s) 189, 410
BstSCI CCNGG 2 cut(s) 187, 408
BstSFI CTRYAG 2 cut(s) 766, 1101
BstV1I GCAGC 5 cut(s) 587, 623, 987, 1009, 1294
BstV2I GAAGAC 1 cut(s) 1247
BstXI CCANNNNNNTGG 1 cut(s) 1138
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 3 cut(s) 243, 849, 905
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 2 cut(s) 93, 199
BtsIMutI CAGTG 3 cut(s) 93, 199, 347
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 1 cut(s) 687
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 3 cut(s) 241, 475, 903
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 1 cut(s) 1241
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 143, 1127
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 8 cut(s) 69, 276, 350, 523, 627, 1038, 1226, 1311
DinI GGCGCC 1 cut(s) 434
DpnI GATC 4 cut(s) 31, 541, 1079, 1231
DpnII GATC 4 cut(s) 29, 539, 1077, 1229
EaeI YGGCCR 1 cut(s) 847
Eam1104I CTCTTC 2 cut(s) 109, 603
EarI CTCTTC 2 cut(s) 109, 603
Eco32I GATATC 1 cut(s) 1293
Eco47I GGWCC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 241
EcoRI GAATTC 2 cut(s) 793, 925
EcoRII CCWGG 2 cut(s) 187, 408
EcoRV GATATC 1 cut(s) 1293
EgeI GGCGCC 1 cut(s) 434
EheI GGCGCC 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 146, 1130
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 142, 1126
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 5 cut(s) 576, 612, 998, 1001, 1308
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 5 cut(s) 576, 612, 998, 1001, 1308
FspBI CTAG 3 cut(s) 437, 686, 986
GlaI GCGC 1 cut(s) 434
GluI GCNGC 5 cut(s) 576, 612, 998, 1001, 1308
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 3 cut(s) 243, 849, 905
HapII CCGG 1 cut(s) 778
HgaI GACGC 1 cut(s) 1241
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 2 cut(s) 146, 1130
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HindIII AAGCTT 1 cut(s) 1185
HinfI GANTC 1 cut(s) 1091
HpaII CCGG 1 cut(s) 778
HphI GGTGA 2 cut(s) 317, 733
Hpy166II GTNNAC 3 cut(s) 387, 696, 921
Hpy188I TCNGA 3 cut(s) 22, 351, 1177
Hpy188III TCNNGA 8 cut(s) 41, 203, 537, 602, 702, 863, 986, 1233
Hpy8I GTNNAC 3 cut(s) 387, 696, 921
HpyAV CCTTC 4 cut(s) 488, 626, 1172, 1275
HpyCH4III ACNGT 2 cut(s) 322, 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 189, 528, 563, 572, 1222
HpyF3I CTNAG 8 cut(s) 69, 276, 350, 523, 627, 1038, 1226, 1311
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 2 cut(s) 146, 1130
HspAI GCGC 1 cut(s) 433
KasI GGCGCC 1 cut(s) 432
Kzo9I GATC 4 cut(s) 29, 539, 1077, 1229
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 4 cut(s) 528, 563, 1016, 1221
Lsp1109I GCAGC 5 cut(s) 587, 623, 987, 1009, 1294
LweI GCATC 2 cut(s) 255, 357
MaeI CTAG 3 cut(s) 437, 686, 986
MaeIII GTNAC 1 cut(s) 196
MalI GATC 4 cut(s) 31, 541, 1079, 1231
MboI GATC 4 cut(s) 29, 539, 1077, 1229
MfeI CAATTG 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 1163
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 6 cut(s) 294, 793, 819, 925, 1211, 1285
MluNI TGGCCA 1 cut(s) 849
Mly113I GGCGCC 1 cut(s) 433
MmeI TCCRAC 3 cut(s) 429, 994, 1220
Mox20I TGGCCA 1 cut(s) 849
MscI TGGCCA 1 cut(s) 849
MseI TTAA 2 cut(s) 138, 800
MslI CAYNNNNRTG 2 cut(s) 340, 756
Msp20I TGGCCA 1 cut(s) 849
MspA1I CMGCKG 3 cut(s) 614, 1000, 1307
MspI CCGG 1 cut(s) 778
MspR9I CCNGG 2 cut(s) 189, 410
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 471, 1039
MvaI CCWGG 2 cut(s) 189, 410
MwoI GCNNNNNNNGC 5 cut(s) 189, 528, 563, 572, 1222
NarI GGCGCC 1 cut(s) 433
NdeI CATATG 1 cut(s) 753
NdeII GATC 4 cut(s) 29, 539, 1077, 1229
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 2 cut(s) 146, 1130
NlaIV GGNNCC 3 cut(s) 403, 434, 530
PciSI GCTCTTC 1 cut(s) 603
PctI GAATGC 2 cut(s) 471, 1039
PfeI GAWTC 1 cut(s) 1091
PflMI CCANNNNNTGG 1 cut(s) 1275
PkrI GCNGC 5 cut(s) 577, 613, 999, 1002, 1309
PluTI GGCGCC 1 cut(s) 436
Psp6I CCWGG 2 cut(s) 187, 408
PspGI CCWGG 2 cut(s) 187, 408
PspN4I GGNNCC 3 cut(s) 403, 434, 530
PspPI GGNCC 3 cut(s) 241, 475, 903
PstI CTGCAG 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 1000
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 340, 756
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 2 cut(s) 138, 800
SatI GCNGC 5 cut(s) 576, 612, 998, 1001, 1308
Sau3AI GATC 4 cut(s) 29, 539, 1077, 1229
Sau96I GGNCC 3 cut(s) 241, 475, 903
ScrFI CCNGG 2 cut(s) 189, 410
SduI GDGCHC 1 cut(s) 1163
SfaNI GCATC 2 cut(s) 255, 357
SfcI CTRYAG 2 cut(s) 766, 1101
SfoI GGCGCC 1 cut(s) 434
SinI GGWCC 1 cut(s) 475
SmiMI CAYNNNNRTG 2 cut(s) 340, 756
Sse9I AATT 6 cut(s) 294, 793, 819, 925, 1211, 1285
SsiI CCGC 4 cut(s) 27, 315, 614, 1305
SspDI GGCGCC 1 cut(s) 432
SspMI CTAG 3 cut(s) 437, 686, 986
StyD4I CCNGG 2 cut(s) 187, 408
TaaI ACNGT 2 cut(s) 322, 745
TaqI TCGA 2 cut(s) 32, 1317
TasI AATT 6 cut(s) 294, 793, 819, 925, 1211, 1285
TfiI GAWTC 1 cut(s) 1091
Tru1I TTAA 2 cut(s) 138, 800
Tru9I TTAA 2 cut(s) 138, 800
TscAI CASTG 3 cut(s) 100, 199, 347
TseI GCWGC 5 cut(s) 575, 611, 997, 1000, 1307
TspDTI ATGAA 7 cut(s) 467, 740, 786, 826, 900, 1014, 1115
TspRI CASTG 3 cut(s) 100, 199, 347
Van91I CCANNNNNTGG 1 cut(s) 1275
VpaK11BI GGWCC 1 cut(s) 475
XapI RAATTY 2 cut(s) 793, 925
XbaI TCTAGA 1 cut(s) 985
XspI CTAG 3 cut(s) 437, 686, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.